IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2223	 63.57	0	2378776..2380227	-	483	37521792	-	gll2223	-	diaminobutyrate--2-oxoglutarate aminotransferase
2224	 60.32	0	2381379..2381567	-	62	37521793	-	gsl2224	-	hypothetical protein
2225	 66.10	0	2382332..2384278	-	648	37521794	-	gll2225	-	hypothetical protein
2226	 64.69	0	2384287..2387316	-	1009	37521795	-	gll2226	-	hypothetical protein
2227	 66.13	0	2387610..2387984	+	124	37521796	-	glr2227	-	hypothetical protein
2228	 63.30	0	2388063..2388626	-	187	37521797	def	gll2228	-	peptide deformylase
2229	 65.89	0	2388697..2389728	-	343	37521798	-	gll2229	-	cell-shape determining protein
2230	 60.00	0	2389992..2390591	+	199	37521799	-	glr2230	-	ribosomal-protein-alanine N-acetyltransferase
2231	 58.11	0	2390677..2391786	+	369	37521800	-	glr2231	-	putative inner membrane protein translocase component YidC
2232	 65.13	0	2391783..2392304	+	173	37521801	-	glr2232	-	hypothetical protein
2233	 66.46	0	2392288..2392779	+	163	37521802	-	glr2233	-	hypothetical protein
2234	 66.51	0	2392848..2393495	+	215	37521803	nblB	gvip306	-	phycocyanin alpha phycocyanobilin lyase related protein NblB-like protein
2235	 65.14	0	2393701..2394681	+	326	37521804	-	glr2235	-	hypothetical protein
2236	 61.94	0	2394754..2395197	+	147	37521805	psaL	gvip307	-	photosystem I reaction center protein subunit XI
2237	 70.86	+1	2395211..2396737	+	508	37521806	-	glr2237	-	hypothetical protein
2238	 60.76	0	2396734..2397021	-	95	37521807	clpS	gsl2238	-	ATP-dependent Clp protease adaptor
2239	 63.18	0	2397056..2397256	-	66	37521808	-	gsl2239	-	hypothetical protein
2240	 68.15	+1	2397372..2398115	+	247	37521809	-	glr2240	-	hypothetical protein
2241	 65.47	0	2398109..2398858	+	249	37521810	-	glr2241	-	hypothetical protein
2242	 65.38	0	2398882..2399502	-	206	37521811	-	gll2242	-	hypothetical protein
2243	 67.29	+1	2399681..2400319	-	212	37521812	-	gll2243	-	hypothetical protein
2244	 56.83	-1	2400665..2405830	+	1721	37521813	-	glr2244	-	WD repeat-containing protein
2245	 47.11	-2	2406210..2407523	+	437	37521814	-	glr2245	-	hypothetical protein
2246	 62.45	0	2407580..2408077	+	165	37521815	-	glr2246	-	hypothetical protein
2247	 67.69	+1	2408078..2409439	+	453	37521816	-	glr2247	-	hypothetical protein
2248	 66.26	0	2409436..2410173	+	245	37521817	-	glr2248	-	ABC transporter ATP-binding protein
2249	 59.33	0	2410405..2412039	-	544	37521818	-	gll2249	-	hypothetical protein
2250	 57.26	-1	2412343..2412810	+	155	37521819	-	glr2250	-	hypothetical protein
2251	 62.64	0	2413009..2413356	+	115	37521820	-	glr2251	-	hypothetical protein
2252	 66.75	0	2413353..2414531	-	392	37521821	-	gll2252	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2253	 69.48	+1	2414643..2415923	-	426	37521822	-	gll2253	-	hypothetical protein
2254	 64.07	0	2416099..2416869	-	256	37521823	-	gll2254	-	hypothetical protein
2255	 67.59	+1	2416878..2417420	-	180	37521824	-	gll2255	-	type IV pilin
2256	 64.74	0	2417569..2419128	+	519	37521825	-	glr2256	-	hypothetical protein
2257	 63.92	0	2419125..2419670	+	181	37521826	-	glr2257	-	two-component response regulator
2258	 62.05	0	2419843..2421054	+	403	37521827	-	glr2258	-	two-component sensor histidine kinase
2259	 63.35	0	2421254..2421826	-	190	37521828	-	gll2259	-	hypothetical protein
2260	 65.09	0	2422095..2423108	-	337	37521829	-	gll2260	-	oxidoreductase
2261	 63.67	0	2423295..2425160	+	621	37521830	-	glr2261	-	hypothetical protein
2262	 62.27	0	2425171..2426580	-	469	37521831	-	gll2262	-	peptide transporter
2263	 68.15	+1	2426805..2427548	-	247	37521832	-	gll2263	-	hypothetical protein
2264	 65.02	0	2427638..2429518	-	626	37521833	-	gll2264	-	HlyB/MsbA family ABC transporter
2265	 60.28	0	2429853..2430212	-	119	37521834	-	gll2265	-	hypothetical protein
2266	 62.14	0	2430302..2433328	+	1008	37521835	-	glr2266	-	helicase
2267	 63.27	0	2433325..2434149	+	274	37521836	-	glr2267	-	hypothetical protein
2268	 56.58	-1	2434341..2435252	+	303	37521837	-	glr2268	-	hypothetical protein
2269	 56.47	-1	2435266..2435922	-	218	37521838	-	gll2269	-	hypothetical protein
2270	 55.83	-1	2435940..2436179	-	79	37521839	-	gsl2270	-	hypothetical protein
2271	 63.80	0	2436258..2437340	-	360	37521840	hrcA	gll2271	-	heat-inducible transcription repressor
2272	 61.87	0	2437471..2437887	+	138	37521841	-	glr2272	-	two-component response regulator
2273	 59.56	0	2437869..2438093	+	74	37521842	-	gsr2273	-	hypothetical protein
2274	 63.26	0	2438065..2438769	+	234	37521843	-	glr2274	-	two-component response regulator
2275	 65.97	0	2438791..2439939	+	382	37521844	-	glr2275	-	hypothetical protein
2276	 63.64	0	2440032..2440526	+	164	37521845	petE	gvip308	-	plastocyanin
2277	 53.24	-1	2440606..2440821	+	71	37521846	-	gsr2277	-	hypothetical protein
2278	 59.83	0	2440818..2441051	+	77	37521847	-	gsr2278	-	hypothetical protein
2279	 55.82	-1	2441183..2442058	+	291	37521848	-	glr2279	-	hypothetical protein
2280	 62.47	0	2442188..2442949	+	253	37521849	-	glr2280	-	ABC transporter ATP-binding protein
2281	 64.50	0	2443003..2443923	+	306	37521850	hslO	gvip309	-	Hsp33-like chaperonin
2282	 59.85	0	2443972..2445027	-	351	37521851	-	gll2282	-	hypothetical protein
2283	 63.01	0	2445180..2448518	+	1112	37521852	rpoB	gvip310	-	DNA-directed RNA polymerase subunit beta
2284	 61.50	0	2448588..2450330	-	580	37521853	-	gll2284	-	hypothetical protein
2285	 54.32	-1	2450671..2450832	+	53	37521854	-	gsr2285	-	hypothetical protein
2286	 65.98	0	2451325..2451615	-	96	37521855	-	gsl2286	-	hypothetical protein
2287	 62.39	0	2451804..2452037	+	77	37521856	-	gsr2287	-	hypothetical protein
2288	 59.72	0	2452024..2452383	+	119	37521857	-	glr2288	-	hypothetical protein
2289	 66.49	0	2452414..2452977	-	187	37521858	-	gll2289	-	dioxygenase
2290	 64.81	0	2452977..2454593	-	538	37521859	leuA	gvip311	-	2-isopropylmalate synthase
2291	 61.82	0	2454685..2455881	-	398	37521860	-	gll2291	-	hypothetical protein
2292	 47.39	-2	2456080..2456520	-	146	37521861	-	gll2292	-	hypothetical protein
2293	 46.60	-2	2456513..2456836	-	107	37521862	-	gll2293	-	hypothetical protein
2294	 64.70	0	2456889..2458007	-	372	37521863	-	gll2294	-	hypothetical protein
2295	 60.72	0	2458009..2458899	-	296	37521864	petH	gvip312	-	ferredoxin--NADP+ reductase
2296	 58.84	0	2459272..2460267	+	331	37521865	prk	gvip313	-	phosphoribulokinase
2297	 63.14	0	2460303..2462315	+	670	37521866	-	glr2297	-	transketolase
2298	 61.40	0	2462385..2463428	+	347	37521867	-	glr2298	-	sugar-non-specific nuclease NucA-like protein
2299	 61.47	0	2463510..2463932	-	140	37521868	-	gll2299	-	sugar-non-specific nuclease inhibitor NuiA-like protein
2300	 56.04	-1	2463986..2464399	-	137	37521869	-	gll2300	-	hypothetical protein
2301	 53.70	-1	2464399..2464668	-	89	37521870	-	gsl2301	-	hypothetical protein
2302	 43.80	-2	2465786..2467543	+	585	37521871	-	glr2302	-	hypothetical protein
2303	 41.26	-2	2468037..2468957	+	306	37521872	-	glr2303	-	hypothetical protein
2304	 64.08	0	2469067..2469453	-	128	37521873	-	gll2304	-	hypothetical protein
2305	 64.14	0	2469847..2470875	+	342	37521874	-	glr2305	-	hypothetical protein
2306	 65.69	0	2470872..2471384	-	170	37521875	-	gll2306	-	hypothetical protein
2307	 63.31	0	2471478..2472401	-	307	37521876	-	gll2307	-	hypothetical protein
2308	 66.67	0	2472455..2472865	-	136	37521877	-	gll2308	-	hypothetical protein
2309	 61.44	0	2472869..2474227	-	452	37521878	-	gll2309	-	hypothetical protein
2310	 63.19	0	2474278..2474910	+	210	37521879	-	glr2310	-	hypothetical protein
2311	 54.49	-1	2474947..2475258	+	103	37521880	acp	gvip314	-	acyl carrier protein
2312	 66.89	+1	2475616..2476491	+	291	37521881	-	glr2312	-	hypothetical protein
2313	 62.83	0	2476563..2477786	+	407	37521882	pgk	gvip315	-	phosphoglycerate kinase
2314	 62.95	0	2477860..2479473	+	537	37521883	-	glr2314	-	hypothetical protein
2315	 67.33	+1	2479489..2480397	-	302	37521884	-	gll2315	-	ribokinase
2316	 65.37	0	2480661..2482043	+	460	37521885	murC	gvip316	-	UDP-N-acetylmuramate--L-alanine ligase
2317	 67.34	+1	2482040..2482933	+	297	37521886	-	glr2317	-	UDP-N-acetylenolpyruvylglucosamine reductase
2318	 61.84	0	2482954..2483574	+	206	37521887	-	glr2318	-	hypothetical protein
2319	 61.01	0	2483582..2484235	-	217	37521888	-	gll2319	-	hypothetical protein
2320	 64.59	0	2484328..2485485	-	385	37521889	-	gll2320	-	small subunit of soluble hydrogenase
2321	 58.27	0	2485617..2486390	+	257	37521890	thyX	glr2321	-	FAD-dependent thymidylate synthase
2322	 57.06	-1	2486614..2487696	+	360	37521891	psbA	gvip317	-	photosystem II protein D1
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.