IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2166	 63.29	0	2315841..2316758	+	305	37521735	ctaB	gvip301	-	protoheme IX farnesyltransferase
2167	 65.08	0	2316778..2317785	+	335	37521736	-	glr2167	-	ABC transporter ATP-binding protein
2168	 62.71	0	2317822..2318706	+	294	37521737	ycf38	gvip302	-	hypothetical protein
2169	 55.51	-1	2318703..2319401	-	232	37521738	-	gll2169	-	hypothetical protein
2170	 57.29	-1	2319719..2320294	+	191	37521739	-	glr2170	-	superoxide dismutase
2171	 62.31	0	2320338..2322587	+	749	37521740	-	glr2171	-	hypothetical protein
2172	 55.91	-1	2322659..2322937	-	92	37521741	-	gsl2172	-	hypothetical protein
2173	 69.19	+1	2323031..2323546	-	171	37521742	-	gll2173	-	ferripyochelin binding protein
2174	 64.26	0	2323555..2324511	-	318	37521743	-	gll2174	-	hypothetical protein
2175	 65.10	0	2324528..2324974	-	148	37521744	-	gll2175	-	hypothetical protein
2176	 70.06	+1	2325022..2327229	-	735	37521745	-	gll2176	-	hypothetical protein
2177	 66.01	0	2327284..2327742	-	152	37521746	-	gll2177	-	hypothetical protein
2178	 59.82	0	2327887..2329128	-	413	37521747	-	gll2178	-	hypothetical protein
2179	 61.15	0	2329248..2330207	-	319	37521748	rfbB	gvip303	-	dTDP-glucose 4-6-dehydratase
2180	 66.09	0	2330227..2331615	-	462	37521749	-	gll2180	-	UDP-glucose dehydrogenase
2181	 64.58	0	2331682..2332161	-	159	37521750	-	gll2181	-	hypothetical protein
2182	 64.96	0	2332140..2334662	-	840	37521751	-	gll2182	-	hypothetical protein
2183	 68.16	+1	2334659..2335060	-	133	37521752	-	gll2183	-	mannose-1-phosphate guanyltransferase
2184	 64.97	0	2335077..2335724	-	215	37521753	-	gll2184	-	hypothetical protein
2185	 58.70	0	2335728..2336543	-	271	37521754	-	gll2185	-	glucose-1-phosphate cytidylyltransferase
2186	 63.06	0	2336795..2337904	-	369	37521755	-	gll2186	-	acetyltransferase
2187	 60.20	0	2337933..2338442	-	169	37521756	-	gll2187	-	putative transposase
2188	 63.91	0	2338554..2339207	-	217	37521757	-	gll2188	-	glycosyl transferase
2189	 62.94	0	2339247..2340185	-	312	37521758	-	gll2189	-	glycosyl transferase
2190	 62.75	0	2340195..2341061	-	288	37521759	-	gll2190	-	hypothetical protein
2191	 62.89	0	2341064..2342518	-	484	37521760	-	gll2191	-	hypothetical protein
2192	 61.66	0	2342557..2343495	-	312	37521761	-	gll2192	-	glycosyl transferase
2193	 56.99	-1	2343641..2344591	-	316	37521762	-	gll2193	-	hypothetical protein
2194	 68.10	+1	2344651..2345835	-	394	37521763	-	gll2194	-	glycosyl transferase
2195	 66.91	+1	2345858..2347072	-	404	37521764	-	gll2195	-	glycosyl transferase
2196	 61.13	0	2347092..2348915	-	607	37521765	-	gll2196	-	HlyB/MsbA family ABC transporter
2197	 67.38	+1	2348942..2350063	-	373	37521766	-	gll2197	-	glycosyl transferase
2198	 64.42	0	2350067..2350912	-	281	37521767	-	gll2198	-	hypothetical protein
2199	 65.28	0	2350875..2352317	-	480	37521768	-	gll2199	-	hypothetical protein
2200	 64.09	0	2352327..2353298	-	323	37521769	-	gll2200	-	mannose-1-phosphate guanyltransferase
2201	 66.85	+1	2353388..2354479	-	363	37521770	-	gll2201	-	hypothetical protein
2202	 65.67	0	2354476..2356575	-	699	37521771	-	gll2202	-	hypothetical protein
2203	 64.37	0	2356675..2357982	-	435	37521772	-	gll2203	-	NAD(P)-dependent oxidoreductase
2204	 67.66	+1	2358043..2359356	-	437	37521773	-	gll2204	-	NAD(P)-dependent oxidoreductase
2205	 64.12	0	2359359..2359907	-	182	37521774	rfbC	gvip304	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2206	 60.24	0	2359915..2361003	-	362	37521775	-	gll2206	-	putative epimerase/dehydratase
2207	 66.50	0	2361018..2362238	-	406	37521776	-	gll2207	-	hypothetical protein
2208	 61.24	0	2362240..2363013	-	257	37521777	rfbF	gvip305	-	glucose-1-phosphate cytidylyltransferase
2209	 61.59	0	2363072..2363485	-	137	37521778	-	gll2209	-	hypothetical protein
2210	 56.00	-1	2364041..2364715	-	224	37521779	-	gll2210	-	two-component response regulator
2211	 60.85	0	2365744..2366121	-	125	37521780	-	gll2211	-	hypothetical protein
2212	 62.18	0	2366778..2368205	+	475	37521781	-	glr2212	-	two-component sensor histidine kinase
2213	 60.63	0	2368527..2370728	+	733	37521782	-	glr2213	-	hypothetical protein
2214	 60.20	0	2370725..2371219	+	164	37521783	-	glr2214	-	hypothetical protein
2215	 63.06	0	2371378..2373207	-	609	37521784	-	gll2215	-	D-fructose-6-phosphate amidotransferase
2216	 56.52	-1	2373345..2373551	+	68	37521785	-	gsr2216	-	hypothetical protein
2217	 64.56	0	2373529..2374098	+	189	37521786	-	glr2217	-	hypothetical protein
2218	 65.69	0	2374107..2374310	-	67	37521787	-	gsl2218	-	hypothetical protein
2219	 59.01	0	2374383..2375531	-	382	37521788	-	gll2219	-	histidine decarboxylase
2220	 54.92	-1	2375718..2376083	-	121	37521789	-	gll2220	-	alcohol dehydrogenase
2221	 48.26	-2	2376273..2377163	-	296	37521790	-	gll2221	-	hypothetical protein
2222	 64.04	0	2377254..2378852	-	532	37521791	-	gll2222	-	L-2,4-diaminobutyrate decarboxylase
2223	 63.57	0	2378776..2380227	-	483	37521792	-	gll2223	-	diaminobutyrate--2-oxoglutarate aminotransferase
2224	 60.32	0	2381379..2381567	-	62	37521793	-	gsl2224	-	hypothetical protein
2225	 66.10	0	2382332..2384278	-	648	37521794	-	gll2225	-	hypothetical protein
2226	 64.69	0	2384287..2387316	-	1009	37521795	-	gll2226	-	hypothetical protein
2227	 66.13	0	2387610..2387984	+	124	37521796	-	glr2227	-	hypothetical protein
2228	 63.30	0	2388063..2388626	-	187	37521797	def	gll2228	-	peptide deformylase
2229	 65.89	0	2388697..2389728	-	343	37521798	-	gll2229	-	cell-shape determining protein
2230	 60.00	0	2389992..2390591	+	199	37521799	-	glr2230	-	ribosomal-protein-alanine N-acetyltransferase
2231	 58.11	0	2390677..2391786	+	369	37521800	-	glr2231	-	putative inner membrane protein translocase component YidC
2232	 65.13	0	2391783..2392304	+	173	37521801	-	glr2232	-	hypothetical protein
2233	 66.46	0	2392288..2392779	+	163	37521802	-	glr2233	-	hypothetical protein
2234	 66.51	0	2392848..2393495	+	215	37521803	nblB	gvip306	-	phycocyanin alpha phycocyanobilin lyase related protein NblB-like protein
2235	 65.14	0	2393701..2394681	+	326	37521804	-	glr2235	-	hypothetical protein
2236	 61.94	0	2394754..2395197	+	147	37521805	psaL	gvip307	-	photosystem I reaction center protein subunit XI
2237	 70.86	+1	2395211..2396737	+	508	37521806	-	glr2237	-	hypothetical protein
2238	 60.76	0	2396734..2397021	-	95	37521807	clpS	gsl2238	-	ATP-dependent Clp protease adaptor
2239	 63.18	0	2397056..2397256	-	66	37521808	-	gsl2239	-	hypothetical protein
2240	 68.15	+1	2397372..2398115	+	247	37521809	-	glr2240	-	hypothetical protein
2241	 65.47	0	2398109..2398858	+	249	37521810	-	glr2241	-	hypothetical protein
2242	 65.38	0	2398882..2399502	-	206	37521811	-	gll2242	-	hypothetical protein
2243	 67.29	+1	2399681..2400319	-	212	37521812	-	gll2243	-	hypothetical protein
2244	 56.83	-1	2400665..2405830	+	1721	37521813	-	glr2244	-	WD repeat-containing protein
2245	 47.11	-2	2406210..2407523	+	437	37521814	-	glr2245	-	hypothetical protein
2246	 62.45	0	2407580..2408077	+	165	37521815	-	glr2246	-	hypothetical protein
2247	 67.69	+1	2408078..2409439	+	453	37521816	-	glr2247	-	hypothetical protein
2248	 66.26	0	2409436..2410173	+	245	37521817	-	glr2248	-	ABC transporter ATP-binding protein
2249	 59.33	0	2410405..2412039	-	544	37521818	-	gll2249	-	hypothetical protein
2250	 57.26	-1	2412343..2412810	+	155	37521819	-	glr2250	-	hypothetical protein
2251	 62.64	0	2413009..2413356	+	115	37521820	-	glr2251	-	hypothetical protein
2252	 66.75	0	2413353..2414531	-	392	37521821	-	gll2252	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2253	 69.48	+1	2414643..2415923	-	426	37521822	-	gll2253	-	hypothetical protein
2254	 64.07	0	2416099..2416869	-	256	37521823	-	gll2254	-	hypothetical protein
2255	 67.59	+1	2416878..2417420	-	180	37521824	-	gll2255	-	type IV pilin
2256	 64.74	0	2417569..2419128	+	519	37521825	-	glr2256	-	hypothetical protein
2257	 63.92	0	2419125..2419670	+	181	37521826	-	glr2257	-	two-component response regulator
2258	 62.05	0	2419843..2421054	+	403	37521827	-	glr2258	-	two-component sensor histidine kinase
2259	 63.35	0	2421254..2421826	-	190	37521828	-	gll2259	-	hypothetical protein
2260	 65.09	0	2422095..2423108	-	337	37521829	-	gll2260	-	oxidoreductase
2261	 63.67	0	2423295..2425160	+	621	37521830	-	glr2261	-	hypothetical protein
2262	 62.27	0	2425171..2426580	-	469	37521831	-	gll2262	-	peptide transporter
2263	 68.15	+1	2426805..2427548	-	247	37521832	-	gll2263	-	hypothetical protein
2264	 65.02	0	2427638..2429518	-	626	37521833	-	gll2264	-	HlyB/MsbA family ABC transporter
2265	 60.28	0	2429853..2430212	-	119	37521834	-	gll2265	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.