IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2129	 43.27	-2	2282310..2282480	-	56	37521698	-	gsl2129	-	putative transposase
2130	 54.28	-1	2282617..2283189	+	190	37521699	-	glr2130	-	putative transposase
2131	 53.69	-1	2283239..2283793	+	184	37521700	-	glr2131	-	putative transposase
2132	 52.78	-1	2283911..2284198	-	95	37521701	-	gsl2132	-	hypothetical protein
2133	 66.27	0	2284271..2285782	-	503	37521702	crtH	gvip293	-	hypothetical protein
2134	 66.34	0	2285824..2286441	+	205	37521703	-	glr2134	-	dephospho-CoA kinase
2135	 65.09	0	2286426..2286995	-	189	37521704	-	gll2135	-	hypothetical protein
2136	 68.03	+1	2287095..2288045	+	316	37521705	-	glr2136	-	methyltransferase
2137	 69.41	+1	2288011..2289066	-	351	37521706	-	gll2137	-	oxidoreductase
2138	 61.76	0	2289132..2289539	+	135	37521707	-	glr2138	-	mannose-6-phosphate isomerase
2139	 64.64	0	2289707..2291287	+	526	37521708	serA	gvip294	-	D-3-phosphoglycerate dehydrogenase
2140	 62.48	0	2291337..2292077	+	246	37521709	-	glr2140	-	methyltransferase
2141	 64.78	0	2292097..2293689	+	530	37521710	-	glr2141	-	periplasmic oligopeptide-binding protein
2142	 51.14	-2	2293749..2294624	+	291	37521711	-	glr2142	-	hypothetical protein
2143	 63.23	0	2294654..2295031	-	125	37521712	-	gll2143	-	hypothetical protein
2144	 63.08	0	2295040..2296992	-	650	37521713	-	gll2144	-	hypothetical protein
2145	 68.24	+1	2297023..2297910	-	295	37521714	-	gll2145	-	malonyl coenzyme A-acyl carrier protein transacylase
2146	 63.78	0	2297974..2299326	-	450	37521715	-	gll2146	-	hypothetical protein
2147	 61.13	0	2299292..2300032	+	246	37521716	-	glr2147	-	hypothetical protein
2148	 63.95	0	2300033..2300731	-	232	37521717	-	gll2148	-	hypothetical protein
2149	 65.87	0	2300794..2302182	-	462	37521718	-	gll2149	-	malic enzyme
2150	 61.31	0	2302344..2302847	+	167	37521719	-	glr2150	-	hypothetical protein
2151	 64.86	0	2302905..2303291	-	128	37521720	-	gll2151	-	hypothetical protein
2152	 61.27	0	2303288..2304214	-	308	37521721	-	gll2152	-	hypothetical protein
2153	 57.44	0	2304241..2305161	+	306	37521722	-	glr2153	-	hypothetical protein
2154	 67.88	+1	2305168..2305908	-	246	37521723	-	gll2154	-	oxidoreductase
2155	 59.62	0	2306020..2306658	+	212	37521724	-	glr2155	-	AhpC/TSA family protein
2156	 64.35	0	2307046..2308470	+	474	37521725	rbcL	gvip295	-	ribulose bisophosphate carboxylase
2157	 62.96	0	2308500..2308877	+	125	37521726	rbcX	gvip296	-	hypothetical protein
2158	 56.39	-1	2308900..2309220	+	106	37521727	rbcS	gvip297	-	ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
2159	 64.70	0	2309302..2310369	+	355	37521728	-	glr2159	-	hypothetical protein
2160	 51.15	-2	2310435..2310782	-	115	37521729	-	gll2160	-	hypothetical protein
2161	 59.94	0	2310785..2311111	-	108	37521730	-	gll2161	-	hypothetical protein
2162	 61.40	0	2311236..2311862	-	208	37521731	ctaE	gvip298	-	cytochrome c oxidase subunit III
2163	 61.68	0	2311880..2313562	-	560	37521732	ctaD	gvip299	-	cytochrome c oxidase subunit I
2164	 61.81	0	2313566..2314492	-	308	37521733	ctaC	gvip300	-	cytochrome c oxidase subunit II
2165	 66.67	0	2314894..2315829	+	311	37521734	-	glr2165	-	hypothetical protein
2166	 63.29	0	2315841..2316758	+	305	37521735	ctaB	gvip301	-	protoheme IX farnesyltransferase
2167	 65.08	0	2316778..2317785	+	335	37521736	-	glr2167	-	ABC transporter ATP-binding protein
2168	 62.71	0	2317822..2318706	+	294	37521737	ycf38	gvip302	-	hypothetical protein
2169	 55.51	-1	2318703..2319401	-	232	37521738	-	gll2169	-	hypothetical protein
2170	 57.29	-1	2319719..2320294	+	191	37521739	-	glr2170	-	superoxide dismutase
2171	 62.31	0	2320338..2322587	+	749	37521740	-	glr2171	-	hypothetical protein
2172	 55.91	-1	2322659..2322937	-	92	37521741	-	gsl2172	-	hypothetical protein
2173	 69.19	+1	2323031..2323546	-	171	37521742	-	gll2173	-	ferripyochelin binding protein
2174	 64.26	0	2323555..2324511	-	318	37521743	-	gll2174	-	hypothetical protein
2175	 65.10	0	2324528..2324974	-	148	37521744	-	gll2175	-	hypothetical protein
2176	 70.06	+1	2325022..2327229	-	735	37521745	-	gll2176	-	hypothetical protein
2177	 66.01	0	2327284..2327742	-	152	37521746	-	gll2177	-	hypothetical protein
2178	 59.82	0	2327887..2329128	-	413	37521747	-	gll2178	-	hypothetical protein
2179	 61.15	0	2329248..2330207	-	319	37521748	rfbB	gvip303	-	dTDP-glucose 4-6-dehydratase
2180	 66.09	0	2330227..2331615	-	462	37521749	-	gll2180	-	UDP-glucose dehydrogenase
2181	 64.58	0	2331682..2332161	-	159	37521750	-	gll2181	-	hypothetical protein
2182	 64.96	0	2332140..2334662	-	840	37521751	-	gll2182	-	hypothetical protein
2183	 68.16	+1	2334659..2335060	-	133	37521752	-	gll2183	-	mannose-1-phosphate guanyltransferase
2184	 64.97	0	2335077..2335724	-	215	37521753	-	gll2184	-	hypothetical protein
2185	 58.70	0	2335728..2336543	-	271	37521754	-	gll2185	-	glucose-1-phosphate cytidylyltransferase
2186	 63.06	0	2336795..2337904	-	369	37521755	-	gll2186	-	acetyltransferase
2187	 60.20	0	2337933..2338442	-	169	37521756	-	gll2187	-	putative transposase
2188	 63.91	0	2338554..2339207	-	217	37521757	-	gll2188	-	glycosyl transferase
2189	 62.94	0	2339247..2340185	-	312	37521758	-	gll2189	-	glycosyl transferase
2190	 62.75	0	2340195..2341061	-	288	37521759	-	gll2190	-	hypothetical protein
2191	 62.89	0	2341064..2342518	-	484	37521760	-	gll2191	-	hypothetical protein
2192	 61.66	0	2342557..2343495	-	312	37521761	-	gll2192	-	glycosyl transferase
2193	 56.99	-1	2343641..2344591	-	316	37521762	-	gll2193	-	hypothetical protein
2194	 68.10	+1	2344651..2345835	-	394	37521763	-	gll2194	-	glycosyl transferase
2195	 66.91	+1	2345858..2347072	-	404	37521764	-	gll2195	-	glycosyl transferase
2196	 61.13	0	2347092..2348915	-	607	37521765	-	gll2196	-	HlyB/MsbA family ABC transporter
2197	 67.38	+1	2348942..2350063	-	373	37521766	-	gll2197	-	glycosyl transferase
2198	 64.42	0	2350067..2350912	-	281	37521767	-	gll2198	-	hypothetical protein
2199	 65.28	0	2350875..2352317	-	480	37521768	-	gll2199	-	hypothetical protein
2200	 64.09	0	2352327..2353298	-	323	37521769	-	gll2200	-	mannose-1-phosphate guanyltransferase
2201	 66.85	+1	2353388..2354479	-	363	37521770	-	gll2201	-	hypothetical protein
2202	 65.67	0	2354476..2356575	-	699	37521771	-	gll2202	-	hypothetical protein
2203	 64.37	0	2356675..2357982	-	435	37521772	-	gll2203	-	NAD(P)-dependent oxidoreductase
2204	 67.66	+1	2358043..2359356	-	437	37521773	-	gll2204	-	NAD(P)-dependent oxidoreductase
2205	 64.12	0	2359359..2359907	-	182	37521774	rfbC	gvip304	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2206	 60.24	0	2359915..2361003	-	362	37521775	-	gll2206	-	putative epimerase/dehydratase
2207	 66.50	0	2361018..2362238	-	406	37521776	-	gll2207	-	hypothetical protein
2208	 61.24	0	2362240..2363013	-	257	37521777	rfbF	gvip305	-	glucose-1-phosphate cytidylyltransferase
2209	 61.59	0	2363072..2363485	-	137	37521778	-	gll2209	-	hypothetical protein
2210	 56.00	-1	2364041..2364715	-	224	37521779	-	gll2210	-	two-component response regulator
2211	 60.85	0	2365744..2366121	-	125	37521780	-	gll2211	-	hypothetical protein
2212	 62.18	0	2366778..2368205	+	475	37521781	-	glr2212	-	two-component sensor histidine kinase
2213	 60.63	0	2368527..2370728	+	733	37521782	-	glr2213	-	hypothetical protein
2214	 60.20	0	2370725..2371219	+	164	37521783	-	glr2214	-	hypothetical protein
2215	 63.06	0	2371378..2373207	-	609	37521784	-	gll2215	-	D-fructose-6-phosphate amidotransferase
2216	 56.52	-1	2373345..2373551	+	68	37521785	-	gsr2216	-	hypothetical protein
2217	 64.56	0	2373529..2374098	+	189	37521786	-	glr2217	-	hypothetical protein
2218	 65.69	0	2374107..2374310	-	67	37521787	-	gsl2218	-	hypothetical protein
2219	 59.01	0	2374383..2375531	-	382	37521788	-	gll2219	-	histidine decarboxylase
2220	 54.92	-1	2375718..2376083	-	121	37521789	-	gll2220	-	alcohol dehydrogenase
2221	 48.26	-2	2376273..2377163	-	296	37521790	-	gll2221	-	hypothetical protein
2222	 64.04	0	2377254..2378852	-	532	37521791	-	gll2222	-	L-2,4-diaminobutyrate decarboxylase
2223	 63.57	0	2378776..2380227	-	483	37521792	-	gll2223	-	diaminobutyrate--2-oxoglutarate aminotransferase
2224	 60.32	0	2381379..2381567	-	62	37521793	-	gsl2224	-	hypothetical protein
2225	 66.10	0	2382332..2384278	-	648	37521794	-	gll2225	-	hypothetical protein
2226	 64.69	0	2384287..2387316	-	1009	37521795	-	gll2226	-	hypothetical protein
2227	 66.13	0	2387610..2387984	+	124	37521796	-	glr2227	-	hypothetical protein
2228	 63.30	0	2388063..2388626	-	187	37521797	def	gll2228	-	peptide deformylase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.