IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2029	 67.58	+1	2177572..2178882	+	436	37521598	-	glr2029	-	hypothetical protein
2030	 68.72	+1	2178892..2180352	+	486	37521599	-	glr2030	-	nickel-cobalt resistance protein
2031	 65.08	0	2180365..2183511	+	1048	37521600	-	glr2031	-	cation efflux system protein
2032	 63.52	0	2183532..2183912	+	126	37521601	-	glr2032	-	hypothetical protein
2033	 62.54	0	2183957..2184853	+	298	37521602	-	glr2033	-	hypothetical protein
2034	 61.81	0	2184850..2185899	-	349	37521603	-	gll2034	-	phosphate-binding protein
2035	 58.63	0	2186046..2186642	-	198	37521604	-	gll2035	-	hypothetical protein
2036	 64.71	0	2186848..2187666	+	272	37521605	-	glr2036	-	hypothetical protein
2037	 71.36	+1	2187663..2189027	+	454	37521606	-	glr2037	-	hypothetical protein
2038	 68.87	+1	2189090..2189497	+	135	37521607	-	glr2038	-	hypothetical protein
2039	 64.61	0	2189503..2190621	+	372	37521608	-	glr2039	-	hypothetical protein
2040	 63.02	0	2190625..2192241	+	538	37521609	-	glr2040	-	hypothetical protein
2041	 56.94	-1	2192238..2193173	-	311	37521610	-	gll2041	-	hypothetical protein
2042	 61.09	0	2193243..2194067	+	274	37521611	-	glr2042	-	hypothetical protein
2043	 61.96	0	2194108..2194893	+	261	37521612	-	glr2043	-	hypothetical protein
2044	 53.91	-1	2195059..2195442	+	127	37521613	-	glr2044	-	hypothetical protein
2045	 56.73	-1	2195469..2195951	+	160	37521614	-	glr2045	-	hypothetical protein
2046	 59.60	0	2195968..2196165	-	65	37521615	-	gsl2046	-	hypothetical protein
2047	 64.40	0	2196162..2196998	-	278	37521616	-	gll2047	-	hypothetical protein
2048	 67.90	+1	2197001..2197810	-	269	37521617	-	gll2048	-	hypothetical protein
2049	 58.31	0	2197957..2198901	+	314	37521618	-	glr2049	-	hypothetical protein
2050	 66.10	0	2198917..2201394	-	825	37521619	gyrA	gvip274	-	DNA gyrase subunit A
2051	 64.32	0	2201644..2203770	+	708	37521620	-	glr2051	-	hypothetical protein
2052	 65.85	0	2203824..2204435	+	203	37521621	-	glr2052	-	hypothetical protein
2053	 64.06	0	2204422..2205111	+	229	37521622	-	glr2053	-	hypothetical protein
2054	 66.74	0	2205099..2206418	+	439	37521623	-	glr2054	-	ABC transporter ATP-binding protein
2055	 63.15	0	2206420..2207187	+	255	37521624	-	glr2055	-	hypothetical protein
2056	 52.60	-1	2207322..2207513	-	63	37521625	-	gsl2056	-	CAB/ELIP/HLIP superfamily protein
2057	 64.19	0	2207671..2209323	-	550	37521626	-	gll2057	-	indole-3-pyruvate decarboxylase
2058	 67.11	+1	2209471..2210370	+	299	37521627	-	glr2058	-	hypothetical protein
2059	 66.67	0	2210423..2212471	+	682	37521628	-	glr2059	-	two-component sensor histidine kinase
2060	 62.67	0	2212550..2212924	+	124	37521629	-	glr2060	-	hypothetical protein
2061	 63.77	0	2213007..2213282	-	91	37521630	-	gsl2061	-	hypothetical protein
2062	 64.19	0	2213298..2214587	-	429	37521631	thrC	gvip275	-	threonine synthase
2063	 65.50	0	2214715..2215227	+	170	37521632	-	glr2063	-	ribosomal-protein-alanine N-acetyltransferase
2064	 62.64	0	2215509..2217968	+	819	37521633	-	glr2064	-	endopeptidase Clp ATP-binding chain
2065	 57.61	0	2218025..2218333	+	102	37521634	-	glr2065	-	hypothetical protein
2066	 66.48	0	2218674..2219213	+	179	37521635	-	glr2066	-	hypothetical protein
2067	 59.96	0	2219329..2220252	+	307	37521636	-	glr2067	-	hypothetical protein
2068	 56.50	-1	2220655..2221647	-	330	37521637	-	gll2068	-	endopeptidase Clp ATP-binding chain
2069	 60.00	0	2221663..2223117	-	484	37521638	-	gll2069	-	hypothetical protein
2070	 58.59	0	2223172..2223369	+	65	37521639	-	gsr2070	-	hypothetical protein
2071	 63.86	0	2223686..2224720	+	344	37521640	-	glr2071	-	sulfate ABC transporter ATP-binding protein
2072	 61.72	0	2224813..2225802	+	329	37521641	-	glr2072	-	sulfate ABC transporter sulfate-binding protein
2073	 62.46	0	2225827..2226681	+	284	37521642	-	glr2073	-	sulfate ABC transporter permease protein
2074	 61.72	0	2226700..2227569	+	289	37521643	-	glr2074	-	sulfate ABC transporter permease protein
2075	 61.46	0	2227539..2228306	+	255	37521644	-	glr2075	-	hypothetical protein
2076	 58.61	0	2228361..2228633	+	90	37521645	-	gsr2076	-	hypothetical protein
2077	 63.29	0	2228714..2228920	+	68	37521646	-	gsr2077	-	hypothetical protein
2078	 63.17	0	2229073..2230560	+	495	37521647	-	glr2078	-	hypothetical protein
2079	 65.43	0	2230579..2231625	-	348	37521648	-	gll2079	-	hypothetical protein
2080	 53.08	-1	2231840..2232310	+	156	37521649	-	glr2080	-	hypothetical protein
2081	 60.46	0	2232745..2233872	-	375	37521650	cupB	gvip276	-	hypothetical protein
2082	 63.21	0	2233885..2235417	-	510	37521651	ndhD	gvip277	-	NAD(P)H-quinone oxidoreductase subunit D4
2083	 62.09	0	2235433..2237289	-	618	37521652	ndhF	gvip278	-	NAD(P)H-quinone oxidoreductase subunit F
2084	 60.27	0	2237574..2237792	-	72	37521653	-	gsl2084	-	hypothetical protein
2085	 67.24	+1	2237946..2238812	+	288	37521654	-	glr2085	-	hypothetical protein
2086	 61.17	0	2238982..2240328	+	448	37521655	cmpA	gvip279	-	bicarbonate transport system substrate-binding protein
2087	 63.56	0	2240369..2241205	+	278	37521656	cmpB	gvip280	-	bicarbonate transport system permease protein
2088	 62.98	0	2241278..2241982	+	234	37521657	ecaB	gvip281	-	periplasmic beta-type carbonic anhydrase
2089	 64.82	0	2242002..2244002	+	666	37521658	cmpC	gvip282	-	bicarbonate transport system ATP-binding protein
2090	 62.59	0	2244027..2244836	+	269	37521659	cmpD	gvip283	-	bicarbonate transport system ATP-binding protein
2091	 63.41	0	2244833..2245570	-	245	37521660	ccmO	gvip284	-	carbon dioxide concentrating mechanism protein
2092	 71.12	+1	2245646..2246251	-	201	37521661	ccmN	gvip285	-	carbon dioxide concentrating mechanism protein
2093	 66.07	0	2246256..2248262	-	668	37521662	ccmM	gvip286	-	carbon dioxide concentrating mechanism protein
2094	 62.71	0	2248293..2248595	-	100	37521663	ccmL	gvip287	-	carbon dioxide concentrating mechanism protein
2095	 63.16	0	2248595..2248936	-	113	37521664	ccmK	gvip288	-	carbon dioxide concentrating mechanism protein CcmK-like protein
2096	 59.87	0	2248974..2249282	-	102	37521665	-	gvip288.1	-	carbon dioxide concentrating mechanism protein CcmK-like protein
2097	 66.33	0	2249700..2250902	-	400	37521666	-	gll2097	-	serine protease
2098	 66.57	0	2250880..2252910	-	676	37521667	-	gll2098	-	hydantoinase
2099	 61.96	0	2252929..2254353	-	474	37521668	-	gll2099	-	phytase
2100	 66.25	0	2254380..2255339	-	319	37521669	cofG	gll2100	-	FO synthase subunit 1
2101	 66.00	0	2255336..2255635	-	99	37521670	-	gsl2101	-	hypothetical protein
2102	 60.72	0	2255656..2256042	+	128	37521671	-	glr2102	-	hypothetical protein
2103	 65.47	0	2256046..2257131	-	361	37521672	-	gll2103	-	serine/threonine kinase
2104	 59.63	0	2257257..2257526	+	89	37521673	-	gsr2104	-	hypothetical protein
2105	 62.68	0	2257520..2257870	-	116	37521674	ycf57	gvip289	-	hypothetical protein
2106	 48.19	-2	2258119..2258367	-	82	37521675	-	gsl2106	-	hypothetical protein
2107	 62.99	0	2258485..2259708	+	407	37521676	-	glr2107	-	serine protease
2108	 62.54	0	2259764..2260345	+	193	37521677	-	glr2108	-	hypothetical protein
2109	 65.69	0	2260309..2262552	+	747	37521678	-	glr2109	-	fused recombination factor protein RarA/unknown domain-containing protein
2110	 54.10	-1	2262628..2262810	+	60	37521679	-	gsr2110	-	hypothetical protein
2111	 57.14	-1	2262935..2263270	+	111	37521680	-	glr2111	-	hypothetical protein
2112	 63.33	0	2263673..2264542	+	289	37521681	-	glr2112	-	hypothetical protein
2113	 64.47	0	2264593..2266917	+	774	37521682	purL	gvip290	-	phosphoribosylformylglycinamidine synthase II
2114	 64.79	0	2266914..2268350	+	478	37521683	purF	gvip291	-	amidophosphoribosyltransferase
2115	 59.72	0	2268579..2269211	-	210	37521684	-	gll2115	-	hypothetical protein
2116	 62.97	0	2269343..2271400	+	685	37521685	-	glr2116	-	hypothetical protein
2117	 57.10	-1	2271914..2272258	-	114	37521686	-	gll2117	-	hypothetical protein
2118	 60.79	0	2272355..2273086	+	243	37521687	-	glr2118	-	hypothetical protein
2119	 57.49	0	2273369..2274076	+	235	37521688	-	glr2119	-	hypothetical protein
2120	 58.06	0	2274095..2274931	+	278	37521689	-	glr2120	-	hypothetical protein
2121	 59.47	0	2275146..2276423	-	425	37521690	-	gll2121	-	enolase
2122	 58.09	0	2276460..2277497	-	345	37521691	prk	gvip292	-	phosphoribulokinase
2123	 64.80	0	2277625..2279181	-	518	37521692	-	gll2123	-	hypothetical protein
2124	 61.26	0	2279340..2279672	+	110	37521693	-	glr2124	-	hypothetical protein
2125	 49.43	-2	2279806..2280066	-	86	37521694	-	gsl2125	-	hypothetical protein
2126	 50.57	-2	2280085..2281140	-	351	37521695	-	gll2126	-	putative transposase
2127	 55.63	-1	2281206..2282048	-	280	37521696	-	gll2127	-	serine/threonine kinase
2128	 51.05	-2	2282105..2282341	-	78	37521697	-	gsl2128	-	putative transposase
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.