IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
159	 65.48	0	152222..154165	-	647	37519728	-	gll0159	-	acetyl-coenzyme A synthetase
160	 60.52	0	154170..154478	-	102	37519729	rpsT	gvip015	-	30S ribosomal protein S20
161	 60.00	0	154621..154890	+	89	37519730	-	gsr0161	-	hypothetical protein
162	 65.54	0	155006..157126	+	706	37519731	-	glr0162	-	penicillin-binding protein
163	 61.30	0	157153..157506	+	117	37519732	-	glr0163	-	putative translation initiaiton factor
164	 60.82	0	157512..157802	+	96	37519733	-	gsr0164	-	hypothetical protein
165	 60.59	0	157811..158353	+	180	37519734	-	glr0165	-	hypothetical protein
166	 58.90	0	158496..158714	+	72	37519735	-	gsr0166	-	hypothetical protein
167	 52.67	-1	158895..159194	-	99	37519736	-	gsl0167	-	hypothetical protein
168	 57.61	0	159191..159466	-	91	37519737	-	gsl0168	-	hypothetical protein
169	 65.01	0	159622..160164	-	180	37519738	-	gll0169	-	hypothetical protein
170	 61.89	0	160245..161249	+	334	37519739	-	glr0170	-	ferrochelatase
171	 53.20	-1	161268..162440	-	390	37519740	-	gll0171	-	fatty acid desaturase
172	 53.67	-1	162634..163749	+	371	37519741	-	glr0172	-	putative transposase
173	 63.03	0	163771..164622	-	283	37519742	-	gll0173	-	ABC transporter permease protein
174	 63.50	0	164619..165407	-	262	37519743	-	gll0174	-	ABC transporter ATP-binding protein
175	 66.18	0	165404..166420	-	338	37519744	-	gll0175	-	hypothetical protein
176	 66.51	0	166647..168581	+	644	37519745	-	glr0176	-	hypothetical protein
177	 49.89	-2	168961..170742	-	593	37519746	-	gll0177	-	reverse transcriptase-like protein
178	 58.68	0	171416..172066	+	216	37519747	-	glr0178	-	hypothetical protein
179	 56.22	-1	172112..172312	+	66	37519748	-	gsr0179	-	hypothetical protein
180	 60.71	0	172498..172833	-	111	37519749	-	gll0180	-	hypothetical protein
181	 64.54	0	172840..173451	-	203	37519750	-	gll0181	-	hypothetical protein
182	 58.25	0	173588..173872	-	94	37519751	-	gsl0182	-	hypothetical protein
183	 66.77	0	174026..174970	-	314	37519752	-	gll0183	-	pseudouridine synthase
184	 52.08	-2	175511..175750	+	79	37519753	-	gsr0184	-	hypothetical protein
185	 66.67	0	175825..176400	+	191	37519754	-	glr0185	-	hypothetical protein
186	 61.64	0	176664..176882	+	72	37519755	-	gsr0186	-	hypothetical protein
187	 65.79	0	176887..177228	-	113	37519756	-	gll0187	-	hypothetical protein
188	 69.43	+1	177242..177820	-	192	37519757	-	gll0188	-	TetR family transcriptional regulatory protein
189	 66.87	+1	177871..178851	-	326	37519758	-	gll0189	-	oxidoreductase
190	 65.21	0	179009..179830	+	273	37519759	-	glr0190	-	monophosphatase
191	 61.95	0	179836..180450	+	204	37519760	-	glr0191	-	hypothetical protein
192	 63.96	0	180454..181413	-	319	37519761	nadA	gvip016	-	quinolinate synthetase
193	 66.86	+1	181556..182584	+	342	37519762	-	glr0193	-	3-deoxy-7-phosphoheptulonate synthase
194	 63.64	0	182701..184617	-	638	37519763	-	gll0194	-	1-deoxy-D-xylulose-5-phosphate synthase
195	 68.96	+1	184746..185792	-	348	37519764	mtnA	gll0195	-	methylthioribose-1-phosphate isomerase
196	 52.56	-2	186131..186520	+	129	37519765	-	glr0196	-	hypothetical protein
197	 63.96	0	186607..188937	-	776	37519766	-	gll0197	-	alpha-glucosidase
198	 52.62	-1	189511..190407	-	298	37519767	-	gll0198	-	bacterioopsin
199	 45.33	-2	190723..190872	-	49	37519768	-	gsl0199	-	CAB/ELIP/HLIP related protein
200	 48.76	-2	191454..191816	+	120	37519769	-	glr0200	-	hypothetical protein
201	 59.21	0	192212..192895	+	227	37519770	-	glr0201	-	hypothetical protein
202	 55.04	-1	193373..194344	-	323	37519771	-	gll0202	-	pilin gene inverting protein
203	 61.72	0	194739..195809	-	356	37519772	-	gll0203	-	group 2 sigma 70-type sigma factor
204	 60.70	0	195826..196932	+	368	37519773	-	glr0204	-	hypothetical protein
205	 62.19	0	197264..197866	-	200	37519774	-	gll0205	-	hypothetical protein
206	 47.83	-2	198027..198509	-	160	37519775	-	gll0206	-	hypothetical protein
207	 58.52	0	198509..199576	-	355	37519776	-	gll0207	-	hypothetical protein
208	 63.27	0	200444..200884	-	146	37519777	-	gll0208	-	hypothetical protein
209	 50.38	-2	202099..203154	-	351	37519778	-	gll0209	-	putative transposase
210	 41.39	-2	203925..204197	-	90	37519779	-	gsl0210	-	hypothetical protein
211	 59.52	0	204221..205507	-	428	37519780	-	gll0211	-	hypothetical protein
212	 56.75	-1	206315..207322	-	335	37519781	-	gll0212	-	hypothetical protein
213	 60.67	0	208031..213952	-	1973	37519782	-	gll0213	-	hypothetical protein
214	 65.71	0	214608..216812	+	734	37519783	-	glr0214	-	hypothetical protein
215	 61.99	0	216889..218406	+	505	37519784	chlB	gvip017	-	light-independent protochlorophyllide reductase subunit B
216	 64.81	0	218507..218830	+	107	37519785	-	glr0216	-	hypothetical protein
217	 64.91	0	218835..219743	-	302	37519786	ribF	gvip018	-	riboflavin biosynthesis protein
218	 62.76	0	220048..222123	+	691	37519787	ndhF	gvip019	-	NAD(P)H-quinone oxidoreductase subunit F
219	 61.73	0	222130..223710	+	526	37519788	ndhD	gvip020	-	NAD(P)H-quinone oxidoreductase subunit 4
220	 60.93	0	224118..225302	+	394	37519789	-	glr0220	-	hypothetical protein
221	 65.26	0	225309..226445	+	378	37519790	-	glr0221	-	hypothetical protein
222	 69.93	+1	226442..227146	-	234	37519791	-	gll0222	-	two-component response regulator
223	 69.01	+1	227311..228333	+	340	37519792	-	glr0223	-	hypothetical protein
224	 63.39	0	228460..229038	+	192	37519793	-	glr0224	-	hypothetical protein
225	 57.41	0	229416..229631	-	71	37519794	-	gsl0225	-	hypothetical protein
226	 62.87	0	229628..230128	-	166	37519795	-	gll0226	-	hypothetical protein
227	 64.27	0	230131..230673	+	180	37519796	-	glr0227	-	hypothetical protein
228	 52.38	-2	230721..231266	-	181	37519797	-	gll0228	-	hypothetical protein
229	 65.08	0	231619..231807	-	62	37519798	-	gsl0229	-	hypothetical protein
230	 64.04	0	232113..234854	+	913	37519799	-	glr0230	-	hypothetical protein
231	 51.35	-2	234884..235732	+	282	37519800	-	glr0231	-	hypothetical protein
232	 49.55	-2	235816..236259	+	147	37519801	-	glr0232	-	hypothetical protein
233	 44.76	-2	236290..237138	+	282	37519802	-	glr0233	-	hypothetical protein
234	 64.73	0	237352..240447	-	1031	37519803	-	gll0234	-	AcrB/AcrD/AcrF family protein
235	 45.39	-2	240748..240888	-	46	37519804	-	gsl0235	-	hypothetical protein
236	 59.87	0	240904..241212	-	102	37519805	-	gll0236	-	hypothetical protein
237	 64.50	0	241321..244599	+	1092	37519806	-	glr0237	-	hypothetical protein
238	 62.40	0	244596..245111	-	171	37519807	-	gll0238	-	hypothetical protein
239	 60.00	0	245157..245561	-	134	37519808	-	gll0239	-	hypothetical protein
240	 65.85	0	245577..245942	-	121	37519809	-	gll0240	-	hypothetical protein
241	 68.85	+1	246120..246623	-	167	37519810	-	gll0241	-	hypothetical protein
242	 68.81	+1	246745..248469	-	574	37519811	-	gll0242	-	cell division control protein CDC48-like protein
243	 65.37	0	248599..249987	+	462	37519812	-	glr0243	-	hypothetical protein
244	 60.23	0	250109..250807	+	232	37519813	-	glr0244	-	two-component response regulator
245	 64.96	0	250862..251446	-	194	37519814	-	gll0245	-	hypothetical protein
246	 65.90	0	251656..254652	+	998	37519815	-	glr0246	-	glycine dehydrogenase
247	 59.65	0	254760..254987	+	75	37519816	-	gsr0247	-	hypothetical protein
248	 61.70	0	254984..255406	+	140	37519817	-	glr0248	-	hypothetical protein
249	 64.13	0	255600..255875	-	91	37519818	-	gsl0249	-	hypothetical protein
250	 66.27	0	255908..257182	-	424	37519819	-	gll0250	-	hypothetical protein
251	 64.77	0	257515..259839	+	774	37519820	-	glr0251	-	cell division protein FtsY-like protein
252	 64.14	0	260155..260787	-	210	37519821	-	gll0252	-	hypothetical protein
253	 64.87	0	260984..261262	-	92	37519822	-	gsl0253	-	hypothetical protein
254	 66.67	0	261711..262379	-	222	37519823	-	gll0254	-	hydrolase
255	 65.34	0	262472..263524	+	350	37519824	-	glr0255	-	hypothetical protein
256	 55.75	-1	263635..263973	-	112	37519825	glnB	gvip021	-	nitrogen regulatory protein P-II
257	 67.90	+1	264208..265020	+	270	37519826	-	glr0257	-	hypothetical protein
258	 55.16	-1	265023..265439	-	138	37519827	-	gll0258	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.