IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1971	 39.92	-2	2117458..2117958	-	166	37521540	-	gll1971	-	hypothetical protein
1972	 47.25	-2	2118222..2118731	-	169	37521541	-	gll1972	-	hypothetical protein
1973	 63.15	0	2119165..2121408	+	747	37521542	-	glr1973	-	hypothetical protein
1974	 63.13	0	2121418..2122323	+	301	37521543	-	glr1974	-	hypothetical protein
1975	 66.67	0	2122320..2122901	+	193	37521544	-	glr1975	-	hypothetical protein
1976	 59.64	0	2122922..2123746	-	274	37521545	-	gll1976	-	hypothetical protein
1977	 60.98	0	2123765..2125363	-	532	37521546	-	gll1977	-	hypothetical protein
1978	 59.58	0	2125468..2127627	-	719	37521547	-	gll1978	-	ferrichrome-iron receptor
1979	 66.08	0	2127652..2128500	-	282	37521548	-	gll1979	-	ThiJ family protein
1980	 51.88	-2	2128705..2129049	-	114	37521549	-	gll1980	-	cytochrome c6
1981	 62.68	0	2129251..2129952	+	233	37521550	-	glr1981	-	superoxide dismutase
1982	 64.14	0	2129949..2130383	+	144	37521551	-	glr1982	-	hypothetical protein
1983	 67.15	+1	2130389..2130595	-	68	37521552	-	gsl1983	-	hypothetical protein
1984	 64.61	0	2130702..2131235	-	177	37521553	-	gll1984	-	hypothetical protein
1985	 65.48	0	2131300..2133741	-	813	37521554	-	gll1985	-	phosphoenolpyruvate synthase
1986	 65.58	0	2134148..2135071	+	307	37521555	-	glr1986	-	hypothetical protein
1987	 65.85	0	2135101..2135592	+	163	37521556	-	glr1987	-	hypothetical protein
1988	 67.29	+1	2135635..2138055	+	806	37521557	-	glr1988	-	penicillin amidase
1989	 46.31	-2	2138102..2139103	-	333	37521558	-	gll1989	-	hypothetical protein
1990	 49.29	-2	2139454..2139735	+	93	37521559	-	gsr1990	-	hypothetical protein
1991	 63.86	0	2139916..2140734	-	272	37521560	-	gll1991	-	rRNA (adenine-N6,N6)-dimethyltransferase
1992	 65.71	0	2140727..2141563	+	278	37521561	minC	gvip268	-	septum formation inhibitor
1993	 64.56	0	2141566..2142372	+	268	37521562	minD	gvip269	-	septum site-determining protein
1994	 55.07	-1	2142383..2142658	+	91	37521563	minE	gvip270	-	septum site-determining protein
1995	 52.50	-2	2142781..2143020	+	79	37521564	-	gsr1995	-	hypothetical protein
1996	 69.12	+1	2145253..2145456	+	67	37521565	-	gsr1996	-	hypothetical protein
1997	 64.02	0	2145434..2145925	+	163	37521566	-	glr1997	-	cation transporting ATPase
1998	 58.22	0	2145967..2146416	-	149	37521567	-	gll1998	-	hypothetical protein
1999	 64.14	0	2146478..2147983	-	501	37521568	-	gll1999	-	pyruvate kinase
2000	 65.65	0	2148103..2148792	+	229	37521569	-	glr2000	-	ATP-binding protein of ABC transporter
2001	 65.41	0	2148807..2149841	-	344	37521570	-	gll2001	-	hypothetical protein
2002	 68.33	+1	2150068..2150850	-	260	37521571	-	gll2002	-	hydrolase
2003	 63.98	0	2150855..2152192	-	445	37521572	-	gll2003	-	hypothetical protein
2004	 68.28	+1	2152193..2153800	-	535	37521573	-	gll2004	-	oxidoreductase
2005	 62.43	0	2154447..2155319	-	290	37521574	-	gll2005	-	oxidoreductase
2006	 52.91	-1	2155370..2155747	-	125	37521575	-	gll2006	-	hypothetical protein
2007	 52.24	-2	2155747..2157243	-	498	37521576	-	gll2007	-	hypothetical protein
2008	 51.86	-2	2157391..2158302	+	303	37521577	-	glr2008	-	putative transposase
2009	 64.31	0	2158611..2159375	-	254	37521578	-	gll2009	-	hypothetical protein
2010	 57.48	0	2159689..2159982	+	97	37521579	-	gsr2010	-	hypothetical protein
2011	 61.76	0	2160369..2161490	+	373	37521580	-	glr2011	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2012	 64.00	0	2161491..2162840	-	449	37521581	accC	gvip271	-	acetyl-CoA carboxylase biotin carboxylase subunit
2013	 68.14	+1	2162883..2164175	-	430	37521582	-	gll2013	-	TetR family transcriptional regulatory protein
2014	 68.25	+1	2164250..2165578	+	442	37521583	-	glr2014	-	hypothetical protein
2015	 66.25	0	2165575..2167488	+	637	37521584	-	glr2015	-	ABC transporter ATP-binding component
2016	 64.40	0	2167485..2168585	+	366	37521585	-	glr2016	-	ABC transporter permease protein
2017	 62.39	0	2168590..2169711	+	373	37521586	-	glr2017	-	ABC transporter permease protein
2018	 63.12	0	2170097..2170717	-	206	37521587	-	gll2018	-	DNA-3-methyladenine glycosylase
2019	 64.31	0	2170756..2171094	-	112	37521588	-	gll2019	-	hypothetical protein
2020	 65.88	0	2171087..2171722	-	211	37521589	-	gll2020	-	hypothetical protein
2021	 63.30	0	2171796..2173220	+	474	37521590	ccs1	gvip272	-	c-type cytochrome biogenesis protein
2022	 63.62	0	2173228..2174244	+	338	37521591	ccsA	gvip273	-	c-type cytochrome biogenesis protein
2023	 60.24	0	2174273..2174848	+	191	37521592	-	glr2023	-	signal peptidase I
2024	 49.61	-2	2174980..2175366	-	128	37521593	-	gll2024	-	hypothetical protein
2025	 51.08	-2	2175363..2175593	-	76	37521594	-	gsl2025	-	hypothetical protein
2026	 52.67	-1	2175649..2175891	-	80	37521595	-	gsl2026	-	hypothetical protein
2027	 57.73	0	2176189..2176602	+	137	37521596	-	glr2027	-	hypothetical protein
2028	 67.52	+1	2176608..2177543	+	311	37521597	-	glr2028	-	hypothetical protein
2029	 67.58	+1	2177572..2178882	+	436	37521598	-	glr2029	-	hypothetical protein
2030	 68.72	+1	2178892..2180352	+	486	37521599	-	glr2030	-	nickel-cobalt resistance protein
2031	 65.08	0	2180365..2183511	+	1048	37521600	-	glr2031	-	cation efflux system protein
2032	 63.52	0	2183532..2183912	+	126	37521601	-	glr2032	-	hypothetical protein
2033	 62.54	0	2183957..2184853	+	298	37521602	-	glr2033	-	hypothetical protein
2034	 61.81	0	2184850..2185899	-	349	37521603	-	gll2034	-	phosphate-binding protein
2035	 58.63	0	2186046..2186642	-	198	37521604	-	gll2035	-	hypothetical protein
2036	 64.71	0	2186848..2187666	+	272	37521605	-	glr2036	-	hypothetical protein
2037	 71.36	+1	2187663..2189027	+	454	37521606	-	glr2037	-	hypothetical protein
2038	 68.87	+1	2189090..2189497	+	135	37521607	-	glr2038	-	hypothetical protein
2039	 64.61	0	2189503..2190621	+	372	37521608	-	glr2039	-	hypothetical protein
2040	 63.02	0	2190625..2192241	+	538	37521609	-	glr2040	-	hypothetical protein
2041	 56.94	-1	2192238..2193173	-	311	37521610	-	gll2041	-	hypothetical protein
2042	 61.09	0	2193243..2194067	+	274	37521611	-	glr2042	-	hypothetical protein
2043	 61.96	0	2194108..2194893	+	261	37521612	-	glr2043	-	hypothetical protein
2044	 53.91	-1	2195059..2195442	+	127	37521613	-	glr2044	-	hypothetical protein
2045	 56.73	-1	2195469..2195951	+	160	37521614	-	glr2045	-	hypothetical protein
2046	 59.60	0	2195968..2196165	-	65	37521615	-	gsl2046	-	hypothetical protein
2047	 64.40	0	2196162..2196998	-	278	37521616	-	gll2047	-	hypothetical protein
2048	 67.90	+1	2197001..2197810	-	269	37521617	-	gll2048	-	hypothetical protein
2049	 58.31	0	2197957..2198901	+	314	37521618	-	glr2049	-	hypothetical protein
2050	 66.10	0	2198917..2201394	-	825	37521619	gyrA	gvip274	-	DNA gyrase subunit A
2051	 64.32	0	2201644..2203770	+	708	37521620	-	glr2051	-	hypothetical protein
2052	 65.85	0	2203824..2204435	+	203	37521621	-	glr2052	-	hypothetical protein
2053	 64.06	0	2204422..2205111	+	229	37521622	-	glr2053	-	hypothetical protein
2054	 66.74	0	2205099..2206418	+	439	37521623	-	glr2054	-	ABC transporter ATP-binding protein
2055	 63.15	0	2206420..2207187	+	255	37521624	-	glr2055	-	hypothetical protein
2056	 52.60	-1	2207322..2207513	-	63	37521625	-	gsl2056	-	CAB/ELIP/HLIP superfamily protein
2057	 64.19	0	2207671..2209323	-	550	37521626	-	gll2057	-	indole-3-pyruvate decarboxylase
2058	 67.11	+1	2209471..2210370	+	299	37521627	-	glr2058	-	hypothetical protein
2059	 66.67	0	2210423..2212471	+	682	37521628	-	glr2059	-	two-component sensor histidine kinase
2060	 62.67	0	2212550..2212924	+	124	37521629	-	glr2060	-	hypothetical protein
2061	 63.77	0	2213007..2213282	-	91	37521630	-	gsl2061	-	hypothetical protein
2062	 64.19	0	2213298..2214587	-	429	37521631	thrC	gvip275	-	threonine synthase
2063	 65.50	0	2214715..2215227	+	170	37521632	-	glr2063	-	ribosomal-protein-alanine N-acetyltransferase
2064	 62.64	0	2215509..2217968	+	819	37521633	-	glr2064	-	endopeptidase Clp ATP-binding chain
2065	 57.61	0	2218025..2218333	+	102	37521634	-	glr2065	-	hypothetical protein
2066	 66.48	0	2218674..2219213	+	179	37521635	-	glr2066	-	hypothetical protein
2067	 59.96	0	2219329..2220252	+	307	37521636	-	glr2067	-	hypothetical protein
2068	 56.50	-1	2220655..2221647	-	330	37521637	-	gll2068	-	endopeptidase Clp ATP-binding chain
2069	 60.00	0	2221663..2223117	-	484	37521638	-	gll2069	-	hypothetical protein
2070	 58.59	0	2223172..2223369	+	65	37521639	-	gsr2070	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.