IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1876	 66.67	0	1994196..1994510	+	104	37521445	-	glr1876	-	hypothetical protein
1877	 66.17	0	1994507..1994911	+	134	37521446	-	glr1877	-	hypothetical protein
1878	 67.94	+1	1995025..1995339	+	104	37521447	-	glr1878	-	hypothetical protein
1879	 70.00	+1	1995490..1997652	+	720	37521448	-	glr1879	-	competence protein ComE
1880	 59.09	0	1997692..1998747	+	351	37521449	-	glr1880	-	hypothetical protein
1881	 65.53	0	1998757..1999548	-	263	37521450	-	gll1881	-	hypothetical protein
1882	 63.47	0	1999627..2001879	-	750	37521451	-	gll1882	-	formate dehydrogenase
1883	 58.93	0	2001990..2002571	+	193	37521452	-	glr1883	-	hypothetical protein
1884	 66.55	0	2002847..2003719	-	290	37521453	-	gll1884	-	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase
1885	 71.20	+1	2003821..2004129	-	102	37521454	-	gll1885	-	hypothetical protein
1886	 70.06	+1	2004129..2004482	-	117	37521455	-	gll1886	-	hypothetical protein
1887	 67.03	+1	2004492..2005601	-	369	37521456	-	gll1887	-	hypothetical protein
1888	 59.82	0	2006103..2006657	+	184	37521457	-	glr1888	-	hypothetical protein
1889	 69.03	+1	2007001..2010000	-	999	37521458	-	gll1889	-	hypothetical protein
1890	 57.21	-1	2010121..2011125	-	334	37521459	-	gll1890	-	hypothetical protein
1891	 68.63	+1	2011458..2013185	-	575	37521460	-	gll1891	-	hypothetical protein
1892	 63.78	0	2013422..2014114	-	230	37521461	-	gll1892	-	glutathione S-transferase
1893	 59.70	0	2014332..2014661	+	109	37521462	-	glr1893	-	hypothetical protein
1894	 62.74	0	2014674..2015717	-	347	37521463	-	gll1894	-	oxidoreductase
1895	 57.84	0	2015786..2016238	-	150	37521464	-	gll1895	-	hypothetical protein
1896	 59.72	0	2016309..2016884	-	191	37521465	-	gll1896	-	hypothetical protein
1897	 62.96	0	2016952..2017842	-	296	37521466	-	gll1897	-	hypothetical protein
1898	 65.46	0	2017887..2019209	-	440	37521467	-	gll1898	-	hypothetical protein
1899	 58.98	0	2019249..2020211	-	320	37521468	-	gll1899	-	hypothetical protein
1900	 63.71	0	2020250..2020621	-	123	37521469	-	gll1900	-	hypothetical protein
1901	 64.24	0	2020711..2021616	+	301	37521470	-	glr1901	-	hypothetical protein
1902	 61.06	0	2021742..2022722	+	326	37521471	-	glr1902	-	hypothetical protein
1903	 58.21	0	2022757..2023596	+	279	37521472	-	glr1903	-	hypothetical protein
1904	 61.58	0	2023616..2026345	+	909	37521473	-	glr1904	-	hypothetical protein
1905	 66.07	0	2026350..2027186	-	278	37521474	-	gll1905	-	hypothetical protein
1906	 60.47	0	2027275..2027613	+	112	37521475	petJ	gvip260	-	cytochrome c553
1907	 62.33	0	2027625..2028362	-	245	37521476	-	gll1907	-	hypothetical protein
1908	 61.59	0	2028579..2028893	-	104	37521477	-	gll1908	-	hypothetical protein
1909	 60.92	0	2028990..2031200	+	736	37521478	-	glr1909	-	ferrichrome-iron receptor
1910	 52.15	-2	2031249..2031551	-	100	37521479	-	gll1910	-	hypothetical protein
1911	 61.05	0	2031548..2031814	-	88	37521480	-	gsl1911	-	hypothetical protein
1912	 59.92	0	2031828..2032613	-	261	37521481	ycf43	gvip261	-	hypothetical protein
1913	 68.35	+1	2032661..2032897	-	78	37521482	-	gsl1913	-	hypothetical protein
1914	 62.50	0	2032963..2033250	+	95	37521483	-	gsr1914	-	hypothetical protein
1915	 61.83	0	2033339..2036746	+	1135	37521484	-	glr1915	-	hypothetical protein
1916	 60.48	0	2036775..2037518	+	247	37521485	purC	gvip262	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1917	 63.34	0	2037579..2039414	-	611	37521486	ftsH	gvip263	-	cell division protein
1918	 59.58	0	2039604..2040083	-	159	37521487	petD	gvip264	-	cytochrome b6-f complex subunit IV
1919	 59.88	0	2040122..2040769	-	215	37521488	petB	gvip265	-	cytochrome b6
1920	 62.19	0	2040863..2041309	+	148	37521489	-	glr1920	-	hypothetical protein
1921	 63.35	0	2041306..2042088	-	260	37521490	-	gll1921	-	hypothetical protein
1922	 64.94	0	2042140..2043180	-	346	37521491	-	gll1922	-	oxygenase, Rieske iron-sulfur component
1923	 63.82	0	2043165..2045129	-	654	37521492	-	gll1923	-	phytoene dehydrogenase, Rieske iron-sulfur component
1924	 64.45	0	2045218..2045895	-	225	37521493	-	gll1924	-	peptidase
1925	 66.14	0	2045944..2046891	+	315	37521494	-	glr1925	-	hypothetical protein
1926	 60.68	0	2047137..2048489	+	450	37521495	-	glr1926	-	Mg2+ transporter
1927	 43.54	-2	2048671..2049816	+	381	37521496	-	glr1927	-	hypothetical protein
1928	 63.98	0	2050434..2052221	-	595	37521497	aspS	gvip266	-	aspartyl-tRNA synthetase
1929	 62.29	0	2052246..2052839	+	197	37521498	-	glr1929	-	hypothetical protein
1930	 61.93	0	2052885..2053370	+	161	37521499	apcF	gvip267	-	phycobilisome core component
1931	 63.54	0	2053413..2055074	-	553	37521500	-	gll1931	-	hypothetical protein
1932	 61.38	0	2055178..2056767	+	529	37521501	-	glr1932	-	hypothetical protein
1933	 57.91	0	2056786..2057607	+	273	37521502	-	glr1933	-	hypothetical protein
1934	 63.12	0	2057662..2058450	-	262	37521503	-	gll1934	-	thioesterase
1935	 63.57	0	2058447..2059673	-	408	37521504	-	gll1935	-	cytochrome P450 like protein
1936	 64.09	0	2059670..2060560	-	296	37521505	-	gll1936	-	cyclopropane-fatty-acyl-phospholipid synthase
1937	 54.74	-1	2060557..2060841	-	94	37521506	-	gsl1937	-	hypothetical protein
1938	 64.06	0	2060880..2061839	-	319	37521507	-	gll1938	-	fatty acid desaturase
1939	 62.69	0	2061878..2063887	-	669	37521508	-	gll1939	-	cyclopropane-fatty-acyl-phospholipid synthase
1940	 65.16	0	2063884..2064876	-	330	37521509	-	gll1940	-	fatty acid desaturase
1941	 65.32	0	2064879..2067770	-	963	37521510	-	gll1941	-	polyketide synthase
1942	 59.04	0	2067770..2069041	-	423	37521511	-	gll1942	-	cytochrome P-450 like protein
1943	 61.23	0	2069091..2069366	-	91	37521512	-	gsl1943	-	hypothetical protein
1944	 68.06	+1	2069371..2071230	-	619	37521513	-	gll1944	-	polyketide synthase
1945	 61.81	0	2071230..2071517	-	95	37521514	-	gsl1945	-	hypothetical protein
1946	 63.10	0	2071551..2072504	-	317	37521515	-	gll1946	-	fatty acid desaturase
1947	 65.57	0	2072509..2073507	-	332	37521516	-	gll1947	-	fatty acid desaturase
1948	 66.39	0	2073530..2075320	-	596	37521517	-	gll1948	-	acyl-CoA synthase
1949	 67.85	+1	2075323..2076333	-	336	37521518	-	gll1949	-	oxidoreductase
1950	 66.23	0	2076321..2077919	-	532	37521519	-	gll1950	-	long-chain fatty-acid-CoA ligase
1951	 65.62	0	2077916..2078683	-	255	37521520	-	gll1951	-	phosphopantetheinyltransferase family protein
1952	 66.19	0	2078670..2080148	-	492	37521521	-	gll1952	-	hypothetical protein
1953	 66.38	0	2080190..2081944	-	584	37521522	-	gll1953	-	acyl-CoA synthase
1954	 68.36	+1	2081987..2088136	-	2049	37521523	-	gll1954	-	polyketide synthase
1955	 53.53	-1	2088140..2088451	-	103	37521524	-	gll1955	-	polyketide synthase
1956	 63.32	0	2088488..2090131	-	547	37521525	-	gll1956	-	hypothetical protein
1957	 67.53	+1	2090131..2094414	-	1427	37521526	-	gll1957	-	glycolipid synthase
1958	 66.46	0	2094402..2096852	-	816	37521527	-	gll1958	-	hypothetical protein
1959	 64.82	0	2096897..2100787	-	1296	37521528	-	gll1959	-	glycolipid synthase
1960	 59.07	0	2100999..2101406	-	135	37521529	-	gll1960	-	hypothetical protein
1961	 49.89	-2	2101597..2102049	-	150	37521530	-	gll1961	-	hypothetical protein
1962	 64.33	0	2102094..2104700	-	868	37521531	-	gll1962	-	hypothetical protein
1963	 64.80	0	2104734..2107091	-	785	37521532	-	gll1963	-	hypothetical protein
1964	 59.27	0	2107088..2108548	-	486	37521533	-	gll1964	-	dimethylaniline monoxygenase
1965	 61.38	0	2109291..2112884	+	1197	37521534	-	glr1965	-	WD repeat-containing protein
1966	 67.83	+1	2112867..2113556	-	229	37521535	-	gll1966	-	hypothetical protein
1967	 58.25	0	2113561..2113845	-	94	37521536	-	gsl1967	-	hypothetical protein
1968	 42.18	-2	2114042..2115466	-	474	37521537	-	gll1968	-	hypothetical protein
1969	 59.56	0	2115690..2116097	+	135	37521538	-	glr1969	-	hypothetical protein
1970	 60.52	0	2116162..2117397	+	411	37521539	-	glr1970	-	serine protease inhibitor
1971	 39.92	-2	2117458..2117958	-	166	37521540	-	gll1971	-	hypothetical protein
1972	 47.25	-2	2118222..2118731	-	169	37521541	-	gll1972	-	hypothetical protein
1973	 63.15	0	2119165..2121408	+	747	37521542	-	glr1973	-	hypothetical protein
1974	 63.13	0	2121418..2122323	+	301	37521543	-	glr1974	-	hypothetical protein
1975	 66.67	0	2122320..2122901	+	193	37521544	-	glr1975	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.