IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1817	 65.35	0	1937698..1938531	+	277	37521386	-	glr1817	-	hypothetical protein
1818	 63.81	0	1938556..1939116	+	186	37521387	-	glr1818	-	maltose transacetylase
1819	 60.22	0	1939127..1939840	-	237	37521388	-	gll1819	-	methionine sulfoxide reductase A
1820	 54.63	-1	1940143..1940574	+	143	37521389	-	glr1820	-	hypothetical protein
1821	 64.25	0	1940666..1941328	-	220	37521390	-	gll1821	-	endonuclease III
1822	 65.17	0	1941452..1941919	+	155	37521391	-	glr1822	-	MarR family transcriptional regulator
1823	 64.81	0	1942001..1942699	+	232	37521392	-	glr1823	-	hypothetical protein
1824	 52.90	-1	1943106..1943381	-	91	37521393	-	gsl1824	-	hypothetical protein
1825	 56.16	-1	1943372..1943647	-	91	37521394	-	gsl1825	-	hypothetical protein
1826	 56.28	-1	1943940..1944950	-	336	37521395	-	gll1826	-	AraC family transcription regulator
1827	 63.30	0	1945091..1947022	+	643	37521396	-	glr1827	-	hypothetical protein
1828	 64.18	0	1947025..1947708	+	227	37521397	-	glr1828	-	outer membrane protein
1829	 58.33	0	1947756..1948415	-	219	37521398	tsf	gvip250	-	elongation factor Ts
1830	 61.21	0	1948433..1949257	-	274	37521399	rpsB	gvip251	-	30S ribosomal protein S2
1831	 64.52	0	1949429..1950361	+	310	37521400	fmt	gvip252	-	methionyl-tRNA formyltransferase
1832	 64.41	0	1950452..1951336	+	294	37521401	-	glr1832	-	hypothetical protein
1833	 64.74	0	1951406..1952704	+	432	37521402	-	glr1833	-	hypothetical protein
1834	 55.31	-1	1952862..1953134	+	90	37521403	-	gsr1834	-	hypothetical protein
1835	 57.35	0	1953214..1953492	+	92	37521404	-	gsr1835	-	hypothetical protein
1836	 60.55	0	1953496..1956354	-	952	37521405	secA	gvip253	-	preprotein translocase subunit SecA
1837	 49.35	-2	1956877..1957338	+	153	37521406	-	glr1837	-	putative transposase
1838	 49.30	-2	1957346..1957771	+	141	37521407	-	glr1838	-	putative transposase
1839	 66.32	0	1958251..1958535	+	94	37521408	-	gsr1839	-	hypothetical protein
1840	 63.13	0	1958566..1960458	+	630	37521409	-	glr1840	-	hypothetical protein
1841	 67.51	+1	1960584..1961648	+	354	37521410	-	glr1841	-	hypothetical protein
1842	 46.75	-2	1961826..1962518	-	230	37521411	-	gll1842	-	hypothetical protein
1843	 44.99	-2	1962523..1963629	-	368	37521412	-	gll1843	-	hypothetical protein
1844	 59.52	0	1963673..1964638	-	321	37521413	-	gll1844	-	hypothetical protein
1845	 61.92	0	1964660..1965460	-	266	37521414	-	gll1845	-	prohibitin
1846	 66.41	0	1965528..1966703	-	391	37521415	-	gll1846	-	serine protease inhibitor
1847	 66.77	0	1966812..1967801	-	329	37521416	-	gll1847	-	serine protease
1848	 65.72	0	1967874..1969556	+	560	37521417	sir	gvip254	-	sulfite reductase subunit beta
1849	 67.30	+1	1969587..1970372	+	261	37521418	-	glr1849	-	hypothetical protein
1850	 61.00	0	1970612..1970911	+	99	37521419	-	gsr1850	-	hypothetical protein
1851	 59.16	0	1971038..1971943	-	301	37521420	-	gll1851	-	hypothetical protein
1852	 64.52	0	1972038..1972223	-	61	37521421	-	gsl1852	-	hypothetical protein
1853	 51.39	-2	1972402..1972617	-	71	37521422	-	gsl1853	-	hypothetical protein
1854	 65.92	0	1972641..1976366	-	1241	37521423	-	gll1854	-	two-component sensor histidine kinase
1855	 62.07	0	1976669..1978711	-	680	37521424	uvrB	gvip255	-	excinuclease ABC subunit B
1856	 52.53	-2	1978856..1979053	+	65	37521425	-	gsr1856	-	hypothetical protein
1857	 61.71	0	1979113..1979838	+	241	37521426	-	glr1857	-	hypothetical protein
1858	 64.99	0	1979789..1980265	+	158	37521427	-	glr1858	-	hypothetical protein
1859	 68.84	+1	1980274..1981194	+	306	37521428	-	glr1859	-	hypothetical protein
1860	 61.05	0	1981249..1982280	+	343	37521429	-	glr1860	-	oxidoreductase
1861	 65.36	0	1982238..1983386	+	382	37521430	-	glr1861	-	DegT/DnrJ/EryC1/StrS family protein
1862	 57.97	0	1983397..1983879	-	160	37521431	-	gll1862	-	hypothetical protein
1863	 64.94	0	1984099..1986072	+	657	37521432	-	glr1863	-	hypothetical protein
1864	 67.24	+1	1986073..1987122	+	349	37521433	-	glr1864	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1865	 67.83	+1	1987126..1987986	+	286	37521434	lpxC	gvip256	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1866	 62.70	0	1987983..1988411	+	142	37521435	fabZ	glr1866	-	(3R)-hydroxymyristoyl-ACP dehydratase
1867	 67.83	+1	1988452..1989309	+	285	37521436	-	glr1867	-	UDP-N-acetylglucosamine acyltransferase
1868	 62.71	0	1989314..1990477	+	387	37521437	lpxB	glr1868	-	lipid-A-disaccharide synthase
1869	 58.58	0	1990482..1990889	-	135	37521438	petD	gvip257	-	cytochrome b6-f complex subunit 4
1870	 56.57	-1	1990855..1991508	-	217	37521439	petB	gvip258	-	cytochrome b6
1871	 67.19	+1	1991599..1992555	+	318	37521440	-	glr1871	-	hypothetical protein
1872	 65.24	0	1992552..1992761	-	69	37521441	-	gsl1872	-	hypothetical protein
1873	 65.95	0	1992810..1993229	-	139	37521442	-	gll1873	-	hypothetical protein
1874	 65.77	0	1993326..1993436	+	36	37521443	psbX	gvip259	-	photosystem II protein
1875	 62.88	0	1993433..1994092	-	219	37521444	-	gll1875	-	phosphoglycerate mutase
1876	 66.67	0	1994196..1994510	+	104	37521445	-	glr1876	-	hypothetical protein
1877	 66.17	0	1994507..1994911	+	134	37521446	-	glr1877	-	hypothetical protein
1878	 67.94	+1	1995025..1995339	+	104	37521447	-	glr1878	-	hypothetical protein
1879	 70.00	+1	1995490..1997652	+	720	37521448	-	glr1879	-	competence protein ComE
1880	 59.09	0	1997692..1998747	+	351	37521449	-	glr1880	-	hypothetical protein
1881	 65.53	0	1998757..1999548	-	263	37521450	-	gll1881	-	hypothetical protein
1882	 63.47	0	1999627..2001879	-	750	37521451	-	gll1882	-	formate dehydrogenase
1883	 58.93	0	2001990..2002571	+	193	37521452	-	glr1883	-	hypothetical protein
1884	 66.55	0	2002847..2003719	-	290	37521453	-	gll1884	-	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase
1885	 71.20	+1	2003821..2004129	-	102	37521454	-	gll1885	-	hypothetical protein
1886	 70.06	+1	2004129..2004482	-	117	37521455	-	gll1886	-	hypothetical protein
1887	 67.03	+1	2004492..2005601	-	369	37521456	-	gll1887	-	hypothetical protein
1888	 59.82	0	2006103..2006657	+	184	37521457	-	glr1888	-	hypothetical protein
1889	 69.03	+1	2007001..2010000	-	999	37521458	-	gll1889	-	hypothetical protein
1890	 57.21	-1	2010121..2011125	-	334	37521459	-	gll1890	-	hypothetical protein
1891	 68.63	+1	2011458..2013185	-	575	37521460	-	gll1891	-	hypothetical protein
1892	 63.78	0	2013422..2014114	-	230	37521461	-	gll1892	-	glutathione S-transferase
1893	 59.70	0	2014332..2014661	+	109	37521462	-	glr1893	-	hypothetical protein
1894	 62.74	0	2014674..2015717	-	347	37521463	-	gll1894	-	oxidoreductase
1895	 57.84	0	2015786..2016238	-	150	37521464	-	gll1895	-	hypothetical protein
1896	 59.72	0	2016309..2016884	-	191	37521465	-	gll1896	-	hypothetical protein
1897	 62.96	0	2016952..2017842	-	296	37521466	-	gll1897	-	hypothetical protein
1898	 65.46	0	2017887..2019209	-	440	37521467	-	gll1898	-	hypothetical protein
1899	 58.98	0	2019249..2020211	-	320	37521468	-	gll1899	-	hypothetical protein
1900	 63.71	0	2020250..2020621	-	123	37521469	-	gll1900	-	hypothetical protein
1901	 64.24	0	2020711..2021616	+	301	37521470	-	glr1901	-	hypothetical protein
1902	 61.06	0	2021742..2022722	+	326	37521471	-	glr1902	-	hypothetical protein
1903	 58.21	0	2022757..2023596	+	279	37521472	-	glr1903	-	hypothetical protein
1904	 61.58	0	2023616..2026345	+	909	37521473	-	glr1904	-	hypothetical protein
1905	 66.07	0	2026350..2027186	-	278	37521474	-	gll1905	-	hypothetical protein
1906	 60.47	0	2027275..2027613	+	112	37521475	petJ	gvip260	-	cytochrome c553
1907	 62.33	0	2027625..2028362	-	245	37521476	-	gll1907	-	hypothetical protein
1908	 61.59	0	2028579..2028893	-	104	37521477	-	gll1908	-	hypothetical protein
1909	 60.92	0	2028990..2031200	+	736	37521478	-	glr1909	-	ferrichrome-iron receptor
1910	 52.15	-2	2031249..2031551	-	100	37521479	-	gll1910	-	hypothetical protein
1911	 61.05	0	2031548..2031814	-	88	37521480	-	gsl1911	-	hypothetical protein
1912	 59.92	0	2031828..2032613	-	261	37521481	ycf43	gvip261	-	hypothetical protein
1913	 68.35	+1	2032661..2032897	-	78	37521482	-	gsl1913	-	hypothetical protein
1914	 62.50	0	2032963..2033250	+	95	37521483	-	gsr1914	-	hypothetical protein
1915	 61.83	0	2033339..2036746	+	1135	37521484	-	glr1915	-	hypothetical protein
1916	 60.48	0	2036775..2037518	+	247	37521485	purC	gvip262	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.