IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1773	 52.54	-2	1883467..1884648	+	393	37521342	-	glr1773	-	hypothetical protein
1774	 66.83	+1	1885007..1886812	-	601	37521343	-	gll1774	-	aspartate kinase
1775	 64.44	0	1886992..1888746	+	584	37521344	-	glr1775	-	flavoprotein
1776	 65.23	0	1888810..1890549	+	579	37521345	-	glr1776	-	flavoprotein
1777	 64.56	0	1890543..1890875	-	110	37521346	-	gll1777	-	hypothetical protein
1778	 58.86	0	1891216..1892700	+	494	37521347	-	glr1778	-	hypothetical protein
1779	 49.39	-2	1893025..1894095	-	356	37521348	-	gll1779	-	hypothetical protein
1780	 50.12	-2	1894176..1895015	-	279	37521349	-	gll1780	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1781	 61.15	0	1895051..1896517	-	488	37521350	-	gll1781	-	polysaccharide transporter
1782	 64.43	0	1896539..1897522	-	327	37521351	rfbM	gvip246	-	mannose-1-phosphate guanylyltransferase
1783	 63.47	0	1897569..1898444	-	291	37521352	-	gll1783	-	glucose 1-phosphate thymidyltransferase
1784	 65.73	0	1898495..1899982	-	495	37521353	-	gll1784	-	hypothetical protein
1785	 59.88	0	1899994..1900509	-	171	37521354	-	gll1785	-	serine acetyltransferase
1786	 62.27	0	1900573..1901733	-	386	37521355	-	gll1786	-	hypothetical protein
1787	 62.08	0	1901790..1903010	-	406	37521356	-	gll1787	-	glycosyltransferase
1788	 57.38	0	1903017..1904954	-	645	37521357	-	gll1788	-	hypothetical protein
1789	 47.50	-2	1905024..1906082	-	352	37521358	-	gll1789	-	hypothetical protein
1790	 57.47	0	1906336..1907988	+	550	37521359	-	glr1790	-	hypothetical protein
1791	 65.40	0	1907994..1909181	-	395	37521360	-	gll1791	-	glycosyltransferase
1792	 61.36	0	1909225..1909884	-	219	37521361	-	gll1792	-	glycosyltransferase
1793	 62.93	0	1909887..1911386	-	499	37521362	-	gll1793	-	polysaccharide transporter
1794	 60.93	0	1911421..1912500	-	359	37521363	-	gll1794	-	glycosyltransferase
1795	 58.76	0	1912497..1913837	-	446	37521364	-	gll1795	-	hypothetical protein
1796	 64.06	0	1913849..1915879	-	676	37521365	-	gll1796	-	hypothetical protein
1797	 66.67	0	1915910..1916881	-	323	37521366	-	gll1797	-	polysaccharide export outer membrane protein
1798	 64.78	0	1916929..1918305	-	458	37521367	-	gll1798	-	UDP-glucose dehydrogenase
1799	 67.56	+1	1919075..1919299	+	74	37521368	-	gsr1799	-	transcriptional regulator
1800	 63.69	0	1919408..1919776	+	122	37521369	-	glr1800	-	hypothetical protein
1801	 61.68	0	1919851..1920411	+	186	37521370	-	glr1801	-	hypothetical protein
1802	 62.80	0	1920414..1921448	+	344	37521371	-	glr1802	-	hypothetical protein
1803	 61.48	0	1921587..1923128	+	513	37521372	-	glr1803	-	hypothetical protein
1804	 55.63	-1	1923262..1923687	+	141	37521373	-	glr1804	-	hypothetical protein
1805	 59.15	0	1923692..1924330	-	212	37521374	-	gll1805	-	D-alanyl-D-alanine dipeptidase
1806	 66.80	0	1924378..1925925	-	515	37521375	-	gll1806	-	bifunctional pantoate ligase/cytidylate kinase
1807	 66.67	0	1925961..1926785	-	274	37521376	thiG	gvip247	-	thiazole synthase
1808	 63.62	0	1926782..1928194	-	470	37521377	-	gll1808	-	hypothetical protein
1809	 62.50	0	1928239..1929270	+	343	37521378	chlG	gvip248	-	bacteriochlorophyll/chlorophyll a synthase
1810	 61.98	0	1929274..1930041	+	255	37521379	-	glr1810	-	hypothetical protein
1811	 61.46	0	1930041..1930712	+	223	37521380	-	glr1811	-	two-component response regulator
1812	 53.40	-1	1930718..1931953	-	411	37521381	-	gll1812	-	hypothetical protein
1813	 59.44	0	1932111..1932788	-	225	37521382	-	gll1813	-	hypothetical protein
1814	 56.42	-1	1933239..1935083	+	614	37521383	htpG	gvip249	-	heat shock protein 90
1815	 62.09	0	1935291..1936076	+	261	37521384	-	glr1815	-	hypothetical protein
1816	 63.85	0	1936112..1937458	-	448	37521385	-	gll1816	-	two-component sensor histidine kinase
1817	 65.35	0	1937698..1938531	+	277	37521386	-	glr1817	-	hypothetical protein
1818	 63.81	0	1938556..1939116	+	186	37521387	-	glr1818	-	maltose transacetylase
1819	 60.22	0	1939127..1939840	-	237	37521388	-	gll1819	-	methionine sulfoxide reductase A
1820	 54.63	-1	1940143..1940574	+	143	37521389	-	glr1820	-	hypothetical protein
1821	 64.25	0	1940666..1941328	-	220	37521390	-	gll1821	-	endonuclease III
1822	 65.17	0	1941452..1941919	+	155	37521391	-	glr1822	-	MarR family transcriptional regulator
1823	 64.81	0	1942001..1942699	+	232	37521392	-	glr1823	-	hypothetical protein
1824	 52.90	-1	1943106..1943381	-	91	37521393	-	gsl1824	-	hypothetical protein
1825	 56.16	-1	1943372..1943647	-	91	37521394	-	gsl1825	-	hypothetical protein
1826	 56.28	-1	1943940..1944950	-	336	37521395	-	gll1826	-	AraC family transcription regulator
1827	 63.30	0	1945091..1947022	+	643	37521396	-	glr1827	-	hypothetical protein
1828	 64.18	0	1947025..1947708	+	227	37521397	-	glr1828	-	outer membrane protein
1829	 58.33	0	1947756..1948415	-	219	37521398	tsf	gvip250	-	elongation factor Ts
1830	 61.21	0	1948433..1949257	-	274	37521399	rpsB	gvip251	-	30S ribosomal protein S2
1831	 64.52	0	1949429..1950361	+	310	37521400	fmt	gvip252	-	methionyl-tRNA formyltransferase
1832	 64.41	0	1950452..1951336	+	294	37521401	-	glr1832	-	hypothetical protein
1833	 64.74	0	1951406..1952704	+	432	37521402	-	glr1833	-	hypothetical protein
1834	 55.31	-1	1952862..1953134	+	90	37521403	-	gsr1834	-	hypothetical protein
1835	 57.35	0	1953214..1953492	+	92	37521404	-	gsr1835	-	hypothetical protein
1836	 60.55	0	1953496..1956354	-	952	37521405	secA	gvip253	-	preprotein translocase subunit SecA
1837	 49.35	-2	1956877..1957338	+	153	37521406	-	glr1837	-	putative transposase
1838	 49.30	-2	1957346..1957771	+	141	37521407	-	glr1838	-	putative transposase
1839	 66.32	0	1958251..1958535	+	94	37521408	-	gsr1839	-	hypothetical protein
1840	 63.13	0	1958566..1960458	+	630	37521409	-	glr1840	-	hypothetical protein
1841	 67.51	+1	1960584..1961648	+	354	37521410	-	glr1841	-	hypothetical protein
1842	 46.75	-2	1961826..1962518	-	230	37521411	-	gll1842	-	hypothetical protein
1843	 44.99	-2	1962523..1963629	-	368	37521412	-	gll1843	-	hypothetical protein
1844	 59.52	0	1963673..1964638	-	321	37521413	-	gll1844	-	hypothetical protein
1845	 61.92	0	1964660..1965460	-	266	37521414	-	gll1845	-	prohibitin
1846	 66.41	0	1965528..1966703	-	391	37521415	-	gll1846	-	serine protease inhibitor
1847	 66.77	0	1966812..1967801	-	329	37521416	-	gll1847	-	serine protease
1848	 65.72	0	1967874..1969556	+	560	37521417	sir	gvip254	-	sulfite reductase subunit beta
1849	 67.30	+1	1969587..1970372	+	261	37521418	-	glr1849	-	hypothetical protein
1850	 61.00	0	1970612..1970911	+	99	37521419	-	gsr1850	-	hypothetical protein
1851	 59.16	0	1971038..1971943	-	301	37521420	-	gll1851	-	hypothetical protein
1852	 64.52	0	1972038..1972223	-	61	37521421	-	gsl1852	-	hypothetical protein
1853	 51.39	-2	1972402..1972617	-	71	37521422	-	gsl1853	-	hypothetical protein
1854	 65.92	0	1972641..1976366	-	1241	37521423	-	gll1854	-	two-component sensor histidine kinase
1855	 62.07	0	1976669..1978711	-	680	37521424	uvrB	gvip255	-	excinuclease ABC subunit B
1856	 52.53	-2	1978856..1979053	+	65	37521425	-	gsr1856	-	hypothetical protein
1857	 61.71	0	1979113..1979838	+	241	37521426	-	glr1857	-	hypothetical protein
1858	 64.99	0	1979789..1980265	+	158	37521427	-	glr1858	-	hypothetical protein
1859	 68.84	+1	1980274..1981194	+	306	37521428	-	glr1859	-	hypothetical protein
1860	 61.05	0	1981249..1982280	+	343	37521429	-	glr1860	-	oxidoreductase
1861	 65.36	0	1982238..1983386	+	382	37521430	-	glr1861	-	DegT/DnrJ/EryC1/StrS family protein
1862	 57.97	0	1983397..1983879	-	160	37521431	-	gll1862	-	hypothetical protein
1863	 64.94	0	1984099..1986072	+	657	37521432	-	glr1863	-	hypothetical protein
1864	 67.24	+1	1986073..1987122	+	349	37521433	-	glr1864	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1865	 67.83	+1	1987126..1987986	+	286	37521434	lpxC	gvip256	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1866	 62.70	0	1987983..1988411	+	142	37521435	fabZ	glr1866	-	(3R)-hydroxymyristoyl-ACP dehydratase
1867	 67.83	+1	1988452..1989309	+	285	37521436	-	glr1867	-	UDP-N-acetylglucosamine acyltransferase
1868	 62.71	0	1989314..1990477	+	387	37521437	lpxB	glr1868	-	lipid-A-disaccharide synthase
1869	 58.58	0	1990482..1990889	-	135	37521438	petD	gvip257	-	cytochrome b6-f complex subunit 4
1870	 56.57	-1	1990855..1991508	-	217	37521439	petB	gvip258	-	cytochrome b6
1871	 67.19	+1	1991599..1992555	+	318	37521440	-	glr1871	-	hypothetical protein
1872	 65.24	0	1992552..1992761	-	69	37521441	-	gsl1872	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.