IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1674	 60.58	0	1787796..1788863	-	355	37521243	-	gll1674	-	hypothetical protein
1675	 59.56	0	1789035..1789583	+	182	37521244	-	glr1675	-	hypothetical protein
1676	 65.15	0	1789709..1791286	-	525	37521245	dnaK	gvip233	-	DnaK-type molecular chaperone
1677	 64.26	0	1791450..1791698	+	82	37521246	-	gsr1677	-	hypothetical protein
1678	 58.99	0	1791695..1792111	+	138	37521247	-	glr1678	-	plasmid stabilization protein StbB-like protein
1679	 61.63	0	1792124..1792540	-	138	37521248	-	gll1679	-	hypothetical protein
1680	 61.67	0	1792537..1792776	-	79	37521249	-	gsl1680	-	hypothetical protein
1681	 68.29	+1	1792898..1793947	+	349	37521250	-	glr1681	-	hypothetical protein
1682	 65.50	0	1793944..1794798	+	284	37521251	-	glr1682	-	hydratase
1683	 63.35	0	1795322..1795954	-	210	37521252	-	gll1683	-	two-component response regulator
1684	 59.12	0	1796124..1796534	+	136	37521253	-	glr1684	-	two-component response regulator
1685	 65.74	0	1796531..1797823	-	430	37521254	-	gll1685	-	hypothetical protein
1686	 67.47	+1	1797837..1799198	-	453	37521255	-	gll1686	-	two-component sensor histidine kinase
1687	 65.59	0	1799308..1799772	+	154	37521256	-	glr1687	-	hypothetical protein
1688	 63.23	0	1799976..1800440	-	154	37521257	-	gll1688	-	ribose 5-phosphate epimerase
1689	 62.85	0	1800569..1801564	+	331	37521258	-	glr1689	-	hypothetical protein
1690	 58.90	0	1802065..1802283	+	72	37521259	-	gsr1690	-	hypothetical protein
1691	 59.81	0	1802280..1802600	+	106	37521260	-	glr1691	-	hypothetical protein
1692	 62.60	0	1802608..1804254	-	548	37521261	pgi	gll1692	-	glucose-6-phosphate isomerase
1693	 65.02	0	1804405..1805253	-	282	37521262	-	gll1693	-	ABC transporter permease protein
1694	 64.43	0	1805293..1806588	+	431	37521263	-	glr1694	-	ABC transporter solute-binding protein
1695	 60.64	0	1806268..1806549	-	93	37521264	-	gsl1695	-	hypothetical protein
1696	 51.93	-2	1806622..1807062	-	146	37521265	-	gll1696	-	hypothetical protein
1697	 50.46	-2	1807052..1807378	-	108	37521266	-	gll1697	-	hypothetical protein
1698	 60.00	0	1807519..1807923	+	134	37521267	-	glr1698	-	hypothetical protein
1699	 66.10	0	1808024..1808728	+	234	37521268	-	glr1699	-	protein-L-isoaspartate O-methyltransferase
1700	 66.38	0	1808826..1809872	-	348	37521269	-	gll1700	-	hypothetical protein
1701	 63.75	0	1809891..1810643	+	250	37521270	-	glr1701	-	hypothetical protein
1702	 61.42	0	1810644..1811348	-	234	37521271	-	gll1702	-	glutathione S-transferase
1703	 63.84	0	1811597..1813789	-	730	37521272	-	gll1703	-	peptidase
1704	 65.41	0	1813893..1815002	-	369	37521273	-	gll1704	-	hypothetical protein
1705	 65.90	0	1815209..1815994	+	261	37521274	-	glr1705	-	hypothetical protein
1706	 58.82	0	1816423..1817505	+	360	37521275	psbA	gvip234	-	photosystem II protein D1
1707	 59.05	0	1817545..1818240	+	231	37521276	-	glr1707	-	hypothetical protein
1708	 55.48	-1	1818253..1818690	-	145	37521277	-	gll1708	-	hypothetical protein
1709	 53.49	-1	1818687..1818944	-	85	37521278	-	gsl1709	-	hypothetical protein
1710	 48.95	-2	1819485..1820432	+	315	37521279	-	glr1710	-	hypothetical protein
1711	 44.74	-2	1820508..1820849	+	113	37521280	-	glr1711	-	hypothetical protein
1712	 65.01	0	1820938..1822083	-	381	37521281	-	gll1712	-	hypothetical protein
1713	 63.68	0	1822189..1823730	+	513	37521282	-	glr1713	-	hypothetical protein
1714	 63.88	0	1823793..1824869	+	358	37521283	chlI	gvip235	-	magnesium protoporphyrin IX chelatase subunit I
1715	 65.24	0	1825103..1825735	+	210	37521284	-	glr1715	-	hypothetical protein
1716	 61.11	0	1825860..1826129	-	89	37521285	-	gsl1716	-	YciI-like protein
1717	 64.96	0	1826186..1827712	+	508	37521286	trpE	gvip236	-	anthranilate synthase component I
1718	 62.22	0	1827719..1828258	+	179	37521287	trxA	gvip237	-	thiol:disulfide interchange protein
1719	 62.55	0	1828278..1829006	+	242	37521288	ccdA	gvip238	-	putative c-type cytochrome biogenesis protein
1720	 64.42	0	1829016..1829504	+	162	37521289	-	glr1720	-	hypothetical protein
1721	 61.26	0	1829600..1830691	+	363	37521290	-	glr1721	-	hypothetical protein
1722	 57.59	0	1830778..1831251	+	157	37521291	-	glr1722	-	hypothetical protein
1723	 55.05	-1	1831248..1831841	+	197	37521292	-	glr1723	-	hypothetical protein
1724	 55.56	-1	1831954..1832142	+	62	37521293	-	gsr1724	-	hypothetical protein
1725	 61.43	0	1832224..1832586	-	120	37521294	-	gll1725	-	hypothetical protein
1726	 53.49	-1	1832741..1833127	+	128	37521295	-	glr1726	-	putative transposase
1727	 56.43	-1	1833160..1833618	+	152	37521296	-	glr1727	-	putative transposase
1728	 57.62	0	1833712..1834485	-	257	37521297	crtO	gvip239	-	beta-carotene ketolase
1729	 60.39	0	1834420..1835247	+	275	37521298	def	glr1729	-	peptide deformylase
1730	 63.91	0	1835652..1836632	+	326	37521299	-	glr1730	-	sugar transporter permease protein
1731	 68.77	+1	1836629..1838194	+	521	37521300	lnt	glr1731	-	apolipoprotein N-acyltransferase
1732	 64.27	0	1838199..1838825	-	208	37521301	-	gll1732	-	hypothetical protein
1733	 65.21	0	1838898..1840409	-	503	37521302	-	gll1733	-	hypothetical protein
1734	 62.59	0	1840477..1841187	-	236	37521303	-	gll1734	-	sugar fermentation stimulation protein A
1735	 63.59	0	1841184..1841801	-	205	37521304	-	gll1735	-	hypothetical protein
1736	 61.54	0	1842335..1842880	+	181	37521305	-	glr1736	-	acetyltransferase
1737	 57.30	-1	1842882..1843244	-	120	37521306	-	gll1737	-	hypothetical protein
1738	 66.03	0	1843244..1843717	-	157	37521307	-	gll1738	-	hypothetical protein
1739	 62.79	0	1843741..1844385	-	214	37521308	-	gll1739	-	RNA polymerase sigma factor RpoE
1740	 58.87	0	1844529..1844951	+	140	37521309	-	glr1740	-	hypothetical protein
1741	 63.57	0	1844948..1846012	+	354	37521310	ccmA	gvip240	-	3-deoxy-7-phosphoheptulonate synthase
1742	 58.46	0	1846016..1846624	-	202	37521311	-	gll1742	-	hypothetical protein
1743	 61.49	0	1846684..1846857	-	57	37521312	-	gsl1743	-	hypothetical protein
1744	 58.70	0	1847232..1848185	+	317	37521313	pys	gvip241	-	phytoene synthase
1745	 62.84	0	1848182..1848991	+	269	37521314	-	glr1745	-	hypothetical protein
1746	 61.73	0	1850063..1852615	+	850	37521315	-	glr1746	-	AcrB/AcrD/AcrF family protein
1747	 66.57	0	1852612..1853625	+	337	37521316	-	glr1747	-	dihydrokaempferol 4-reductase
1748	 60.00	0	1853615..1854634	+	339	37521317	-	glr1748	-	hypothetical protein
1749	 62.25	0	1854641..1856113	+	490	37521318	-	glr1749	-	photolyase
1750	 58.43	0	1856220..1856960	-	246	37521319	-	gll1750	-	hypothetical protein
1751	 67.87	+1	1857081..1858574	-	497	37521320	glpK	gvip242	-	glycerol kinase
1752	 65.20	0	1858544..1859020	-	158	37521321	-	gll1752	-	hypothetical protein
1753	 55.30	-1	1859066..1859839	+	257	37521322	-	glr1753	-	hypothetical protein
1754	 56.90	-1	1859935..1860753	+	272	37521323	-	glr1754	-	hypothetical protein
1755	 65.51	0	1860764..1861624	+	286	37521324	hemG	gvip243	-	protoporphyrinogen oxidase
1756	 56.83	-1	1861596..1862195	-	199	37521325	infC	gvip244	-	translation initiation factor IF-3
1757	 70.56	+1	1862349..1863119	+	256	37521326	-	glr1757	-	hypothetical protein
1758	 64.69	0	1863183..1865261	+	692	37521327	-	glr1758	-	hypothetical protein
1759	 60.96	0	1865300..1866613	-	437	37521328	-	gll1759	-	Na+/H+ antiporter
1760	 63.12	0	1866857..1867618	+	253	37521329	-	glr1760	-	hypothetical protein
1761	 66.02	0	1867600..1868682	-	360	37521330	-	gll1761	-	hypothetical protein
1762	 61.75	0	1868777..1869325	-	182	37521331	-	gll1762	-	hypothetical protein
1763	 62.23	0	1869427..1870215	+	262	37521332	-	glr1763	-	hypothetical protein
1764	 59.93	0	1870313..1870906	+	197	37521333	-	glr1764	-	RNA polymerase sigma factor
1765	 65.98	0	1870916..1871638	+	240	37521334	-	glr1765	-	hypothetical protein
1766	 62.64	0	1871734..1872627	-	297	37521335	-	gll1766	-	hypothetical protein
1767	 60.85	0	1873534..1875546	+	670	37521336	-	glr1767	-	two-component sensor histidine kinase
1768	 63.24	0	1875563..1876672	+	369	37521337	-	glr1768	-	two-component response regulator
1769	 62.76	0	1876642..1879893	-	1083	37521338	carB	gll1769	-	carbamoyl phosphate synthase large subunit
1770	 59.68	0	1879923..1880237	-	104	37521339	-	gll1770	-	hypothetical protein
1771	 40.83	-2	1881371..1881757	+	128	37521340	-	glr1771	-	hypothetical protein
1772	 62.86	0	1881850..1883322	+	490	37521341	cobQ	gvip245	-	cobyric acid synthase
1773	 52.54	-2	1883467..1884648	+	393	37521342	-	glr1773	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.