IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1579	 69.43	+1	1698472..1699014	-	180	37521148	-	gll1579	-	hypothetical protein
1580	 61.09	0	1699078..1699722	-	214	37521149	folE	gvip221	-	GTP cyclohydrolase I
1581	 67.28	+1	1699746..1700402	-	218	37521150	-	gll1581	-	short chain dehydrogenase
1582	 68.53	+1	1700554..1701090	-	178	37521151	-	gll1582	-	hypothetical protein
1583	 63.83	0	1701130..1701552	-	140	37521152	-	gll1583	-	hypothetical protein
1584	 59.48	0	1701549..1702772	-	407	37521153	ndhA	gvip222	-	NADH dehydrogenase subunit H
1585	 62.34	0	1702787..1703248	-	153	37521154	-	gll1585	-	hypothetical protein
1586	 66.99	+1	1703404..1704639	+	411	37521155	-	glr1586	-	two-component sensor histidine kinase
1587	 68.39	+1	1704641..1705279	+	212	37521156	-	glr1587	-	two-component sensor histidine kinase
1588	 64.86	0	1705281..1705943	+	220	37521157	-	glr1588	-	two-component response regulator
1589	 63.42	0	1706008..1708134	+	708	37521158	-	glr1589	-	hypothetical protein
1590	 64.51	0	1708192..1708701	+	169	37521159	-	glr1590	-	hypothetical protein
1591	 67.24	+1	1708712..1709062	+	116	37521160	-	glr1591	-	hypothetical protein
1592	 69.03	+1	1709102..1709608	+	168	37521161	-	glr1592	-	hypothetical protein
1593	 68.92	+1	1709592..1710167	+	191	37521162	-	glr1593	-	hypothetical protein
1594	 62.52	0	1710203..1710949	+	248	37521163	-	glr1594	-	hypothetical protein
1595	 62.80	0	1711223..1713085	-	620	37521164	-	gll1595	-	alpha-amylase family protein
1596	 61.23	0	1713102..1713800	-	232	37521165	-	gll1596	-	phosphoglyceromutase
1597	 62.39	0	1713857..1715026	-	389	37521166	-	gll1597	-	transaldolase/EF-hand domain-containing protein
1598	 62.88	0	1715454..1716008	-	184	37521167	-	gll1598	-	hypothetical protein
1599	 61.97	0	1716193..1716618	+	141	37521168	rplK	gvip223	-	50S ribosomal protein L11
1600	 63.60	0	1716671..1717387	+	238	37521169	rplA	gvip224	-	50S ribosomal protein L1
1601	 62.52	0	1717558..1718136	+	192	37521170	rplJ	gvip225	-	50S ribosomal protein L10
1602	 63.53	0	1718168..1718581	+	137	37521171	rplL	gvip226	-	50S ribosomal protein L7/L12
1603	 66.32	0	1718695..1719852	+	385	37521172	-	glr1603	-	inositol-5-monophosphate dehydrogenase
1604	 61.92	0	1719907..1721001	+	364	37521173	-	glr1604	-	hypothetical protein
1605	 63.61	0	1721094..1722008	+	304	37521174	accD	gvip227	-	acetyl-CoA carboxylase subunit beta
1606	 61.81	0	1722078..1722365	+	95	37521175	-	gsr1606	-	hypothetical protein
1607	 62.17	0	1722475..1722963	+	162	37521176	-	glr1607	-	hypothetical protein
1608	 64.68	0	1723402..1724157	+	251	37521177	-	glr1608	-	hypothetical protein
1609	 65.24	0	1724209..1726107	+	632	37521178	dnaX	gvip228	-	DNA polymerase III gamma and tau subunits
1610	 63.21	0	1726198..1728456	+	752	37521179	-	glr1610	-	hypothetical protein
1611	 55.99	-1	1728502..1728960	-	152	37521180	-	gll1611	-	putative transposase
1612	 53.49	-1	1728993..1729379	-	128	37521181	-	gll1612	-	putative transposase
1613	 45.41	-2	1729455..1729661	-	68	37521182	-	gsl1613	-	hypothetical protein
1614	 66.35	0	1729807..1730445	+	212	37521183	-	glr1614	-	hypothetical protein
1615	 62.89	0	1730442..1731341	-	299	37521184	-	gll1615	-	mechanosensitive channel protein
1616	 66.42	0	1731378..1733369	-	663	37521185	-	gll1616	-	ribonuclease II
1617	 64.66	0	1733734..1734678	-	314	37521186	-	gll1617	-	oxidoreductase
1618	 62.38	0	1734743..1735162	-	139	37521187	-	gll1618	-	hypothetical protein
1619	 66.34	0	1735391..1736302	-	303	37521188	-	gll1619	-	histone deacetylase family protein
1620	 60.81	0	1736313..1736534	-	73	37521189	-	gsl1620	-	DNA-directed RNA polymerase subunit omega
1621	 63.92	0	1736515..1737132	-	205	37521190	-	gll1621	-	guanylate kinase
1622	 64.86	0	1737266..1738981	+	571	37521191	-	glr1622	-	fibronectin binding protein
1623	 59.91	0	1739007..1739228	+	73	37521192	-	gsr1623	-	hypothetical protein
1624	 63.26	0	1739215..1739625	+	136	37521193	-	glr1624	-	hypothetical protein
1625	 62.98	0	1739622..1740815	-	397	37521194	-	gll1625	-	hypothetical protein
1626	 66.03	0	1741182..1741805	+	207	37521195	-	glr1626	-	hypothetical protein
1627	 55.10	-1	1741844..1742137	-	97	37521196	-	gsl1627	-	putative transposase
1628	 59.16	0	1742154..1742606	-	150	37521197	-	gll1628	-	putative transposase
1629	 68.99	+1	1742667..1743740	-	357	37521198	cbiD	gll1629	-	cobalt-precorrin-6A synthase
1630	 59.16	0	1743963..1749155	+	1730	37521199	-	glr1630	-	WD-40 repeat-containing protein
1631	 48.18	-2	1749261..1749866	-	201	37521200	-	gll1631	-	hypothetical protein
1632	 44.30	-2	1749974..1750210	-	78	37521201	-	gsl1632	-	hypothetical protein
1633	 57.19	-1	1750264..1750548	+	94	37521202	-	gsr1633	-	hypothetical protein
1634	 65.14	0	1750673..1751656	+	327	37521203	-	glr1634	-	hypothetical protein
1635	 61.84	0	1751668..1752144	-	158	37521204	-	gll1635	-	hypothetical protein
1636	 65.21	0	1752172..1752927	-	251	37521205	cobK	gvip229	-	cobalt-precorrin-6x reductase
1637	 66.09	0	1753072..1754289	+	405	37521206	-	glr1637	-	hypothetical protein
1638	 62.21	0	1754286..1755317	+	343	37521207	-	glr1638	-	hypothetical protein
1639	 67.52	+1	1755371..1755841	+	156	37521208	-	glr1639	-	hypothetical protein
1640	 64.90	0	1755894..1756628	-	244	37521209	-	gll1640	-	acetyltransferase
1641	 63.91	0	1756672..1757070	-	132	37521210	-	gll1641	-	hypothetical protein
1642	 64.19	0	1757266..1757709	-	147	37521211	-	gll1642	-	hypothetical protein
1643	 57.46	0	1757962..1758276	-	104	37521212	-	gll1643	-	hypothetical protein
1644	 64.73	0	1758752..1759834	-	360	37521213	-	gll1644	-	hypothetical protein
1645	 60.93	0	1759918..1760196	-	92	37521214	-	gsl1645	-	pterin-4a-carbinolamine dehydratase
1646	 67.63	+1	1760302..1762476	+	724	37521215	glyS	gvip230	-	glycyl-tRNA synthetase subunit beta
1647	 61.45	0	1762469..1762717	+	82	37521216	-	gsr1647	-	hypothetical protein
1648	 63.50	0	1762882..1763292	+	136	37521217	-	glr1648	-	hypothetical protein
1649	 64.08	0	1763355..1764863	+	502	37521218	ycf46	gvip231	-	hypothetical protein
1650	 70.02	+1	1764875..1765678	+	267	37521219	-	glr1650	-	hypothetical protein
1651	 62.96	0	1765675..1766349	-	224	37521220	-	gll1651	-	hypothetical protein
1652	 66.97	+1	1766316..1767647	-	443	37521221	-	gll1652	-	amino acid transporter
1653	 64.55	0	1767682..1768908	-	408	37521222	-	gll1653	-	hypothetical protein
1654	 62.70	0	1768665..1769798	-	377	37521223	-	gll1654	-	hypothetical protein
1655	 62.60	0	1770042..1770950	-	302	37521224	-	gll1655	-	hypothetical protein
1656	 64.60	0	1771133..1771858	+	241	37521225	-	glr1656	-	phosphoadenosine phosphosulfate
1657	 65.34	0	1771861..1772388	-	175	37521226	-	gll1657	-	hypothetical protein
1658	 70.03	+1	1772385..1773098	-	237	37521227	pyrF	gvip232	-	orotidine 5'-phosphate decarboxylase
1659	 66.33	0	1773098..1773688	-	196	37521228	-	gll1659	-	hypothetical protein
1660	 59.09	0	1773813..1774841	+	342	37521229	-	glr1660	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1661	 63.45	0	1774860..1776260	-	466	37521230	-	gll1661	-	two-component sensor histidine kinase
1662	 63.68	0	1776263..1777669	-	468	37521231	-	gll1662	-	two-component sensor histidine kinase
1663	 63.47	0	1777752..1778657	-	301	37521232	-	gll1663	-	metalloprotease MEP1-like protein
1664	 57.99	0	1778787..1779155	+	122	37521233	-	glr1664	-	hypothetical protein
1665	 62.88	0	1779159..1779686	+	175	37521234	-	glr1665	-	hypothetical protein
1666	 62.08	0	1779627..1781042	-	471	37521235	-	gll1666	-	amino acid transporter
1667	 59.92	0	1781107..1781358	-	83	37521236	-	gsl1667	-	hypothetical protein
1668	 61.02	0	1781567..1782895	-	442	37521237	-	gll1668	-	signal transducer AmpG-like protein
1669	 53.10	-1	1782902..1783336	-	144	37521238	-	gll1669	-	hypothetical protein
1670	 49.51	-2	1783333..1783641	-	102	37521239	-	gll1670	-	hypothetical protein
1671	 67.32	+1	1783672..1784745	-	357	37521240	-	gll1671	-	UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1672	 61.83	0	1784867..1786168	+	433	37521241	-	glr1672	-	hypothetical protein
1673	 63.10	0	1786241..1787812	+	523	37521242	-	glr1673	-	hypothetical protein
1674	 60.58	0	1787796..1788863	-	355	37521243	-	gll1674	-	hypothetical protein
1675	 59.56	0	1789035..1789583	+	182	37521244	-	glr1675	-	hypothetical protein
1676	 65.15	0	1789709..1791286	-	525	37521245	dnaK	gvip233	-	DnaK-type molecular chaperone
1677	 64.26	0	1791450..1791698	+	82	37521246	-	gsr1677	-	hypothetical protein
1678	 58.99	0	1791695..1792111	+	138	37521247	-	glr1678	-	plasmid stabilization protein StbB-like protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.