IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
110	 62.02	0	107123..108457	-	444	37519679	lysA	gvip012	-	diaminopimelate decarboxylase
111	 68.07	+1	108590..109516	+	308	37519680	-	glr0111	-	ADP-ribosylglycohydrolase
112	 44.22	-2	109702..110904	+	400	37519681	-	glr0112	-	hypothetical protein
113	 66.67	0	111447..111665	+	72	37519682	-	gsr0113	-	hypothetical protein
114	 65.77	0	111838..112395	-	185	37519683	-	gll0114	-	hypothetical protein
115	 64.03	0	112414..113133	-	239	37519684	-	gll0115	-	short chain oxidoreductase
116	 62.84	0	113268..114104	+	278	37519685	-	glr0116	-	hypothetical protein
117	 62.62	0	114108..115565	-	485	37519686	-	gll0117	-	cyanophycinase
118	 59.13	0	115630..115974	-	114	37519687	-	gll0118	-	hypothetical protein
119	 63.17	0	116079..117365	-	428	37519688	-	gll0119	-	carboxyl-terminal protease
120	 60.64	0	117549..117830	+	93	37519689	-	gsr0120	-	hypothetical protein
121	 61.64	0	117922..118935	+	337	37519690	-	glr0121	-	hypothetical protein
122	 67.35	+1	119016..119891	+	291	37519691	-	glr0122	-	hypothetical protein
123	 62.88	0	119842..120897	-	351	37519692	cobW	gvip013	-	cobalamin synthesis protein cobW-like protein
124	 64.61	0	121048..121533	+	161	37519693	-	glr0124	-	hypothetical protein
125	 50.22	-2	121637..121867	+	76	37519694	-	gsr0125	-	hypothetical protein
126	 44.25	-2	121845..122192	+	115	37519695	-	glr0126	-	hypothetical protein
127	 64.90	0	122286..122966	-	226	37519696	ubiE	gvip014	-	ubiquinone/menaquinone biosynthesis methyltransferase
128	 68.23	+1	122966..123541	-	191	37519697	-	gll0128	-	molybdopterin-guanine dinucleotide biosynthesis protein A
129	 59.45	0	123820..125856	+	678	37519698	-	glr0129	-	oligopeptidase
130	 64.60	0	126121..126990	-	289	37519699	-	gll0130	-	ABC transporter solute-binding protein
131	 66.67	0	127010..127699	-	229	37519700	-	gll0131	-	hypothetical protein
132	 60.11	0	127839..128189	-	116	37519701	-	gll0132	-	hypothetical protein
133	 56.95	-1	128334..128786	-	150	37519702	-	gll0133	-	hypothetical protein
134	 57.94	0	128938..129441	+	167	37519703	-	glr0134	-	hypothetical protein
135	 63.84	0	129703..130410	+	235	37519704	-	glr0135	-	hypothetical protein
136	 59.19	0	130561..131202	+	213	37519705	-	glr0136	-	hypothetical protein
137	 62.77	0	131296..132090	+	264	37519706	-	glr0137	-	hypothetical protein
138	 65.67	0	132087..133190	+	367	37519707	-	glr0138	-	hypothetical protein
139	 62.28	0	133435..134118	-	227	37519708	-	gll0139	-	hypothetical protein
140	 64.48	0	134219..134995	+	258	37519709	-	glr0140	-	exodeoxyribonuclease III
141	 61.20	0	135008..135190	-	60	37519710	-	gsl0141	-	hypothetical protein
142	 62.02	0	135303..135689	-	128	37519711	-	gll0142	-	hypothetical protein
143	 62.24	0	135699..136217	-	172	37519712	-	gll0143	-	transcriptional regulator NrdR
144	 59.86	0	136227..136667	-	146	37519713	-	gll0144	-	hypothetical protein
145	 64.31	0	136652..137161	-	169	37519714	-	gll0145	-	hypothetical protein
146	 65.10	0	137192..138595	+	467	37519715	-	glr0146	-	putative transposase
147	 63.50	0	138540..139265	-	241	37519716	-	gll0147	-	hypothetical protein
148	 65.78	0	139525..139863	+	112	37519717	-	glr0148	-	hypothetical protein
149	 65.65	0	139924..140511	+	195	37519718	-	glr0149	-	ParA family chromosome partitioning ATPase
150	 56.62	-1	140569..141444	+	291	37519719	-	glr0150	-	putative transposase
151	 62.59	0	141822..143390	-	522	37519720	-	gll0151	-	putative transposase
152	 48.10	-2	143605..144051	-	148	37519721	-	gll0152	-	hypothetical protein
153	 58.98	0	144410..147442	+	1010	37519722	-	glr0153	-	hypothetical protein
154	 62.91	0	147765..148163	+	132	37519723	-	glr0154	-	hypothetical protein
155	 56.62	-1	148237..149112	+	291	37519724	-	glr0155	-	putative transposase
156	 65.48	0	149272..149946	+	224	37519725	-	glr0156	-	hypothetical protein
157	 60.08	0	149691..150434	-	247	37519726	-	gll0157	-	hypothetical protein
158	 64.25	0	150634..152166	-	510	37519727	-	gll0158	-	hypothetical protein
159	 65.48	0	152222..154165	-	647	37519728	-	gll0159	-	acetyl-coenzyme A synthetase
160	 60.52	0	154170..154478	-	102	37519729	rpsT	gvip015	-	30S ribosomal protein S20
161	 60.00	0	154621..154890	+	89	37519730	-	gsr0161	-	hypothetical protein
162	 65.54	0	155006..157126	+	706	37519731	-	glr0162	-	penicillin-binding protein
163	 61.30	0	157153..157506	+	117	37519732	-	glr0163	-	putative translation initiaiton factor
164	 60.82	0	157512..157802	+	96	37519733	-	gsr0164	-	hypothetical protein
165	 60.59	0	157811..158353	+	180	37519734	-	glr0165	-	hypothetical protein
166	 58.90	0	158496..158714	+	72	37519735	-	gsr0166	-	hypothetical protein
167	 52.67	-1	158895..159194	-	99	37519736	-	gsl0167	-	hypothetical protein
168	 57.61	0	159191..159466	-	91	37519737	-	gsl0168	-	hypothetical protein
169	 65.01	0	159622..160164	-	180	37519738	-	gll0169	-	hypothetical protein
170	 61.89	0	160245..161249	+	334	37519739	-	glr0170	-	ferrochelatase
171	 53.20	-1	161268..162440	-	390	37519740	-	gll0171	-	fatty acid desaturase
172	 53.67	-1	162634..163749	+	371	37519741	-	glr0172	-	putative transposase
173	 63.03	0	163771..164622	-	283	37519742	-	gll0173	-	ABC transporter permease protein
174	 63.50	0	164619..165407	-	262	37519743	-	gll0174	-	ABC transporter ATP-binding protein
175	 66.18	0	165404..166420	-	338	37519744	-	gll0175	-	hypothetical protein
176	 66.51	0	166647..168581	+	644	37519745	-	glr0176	-	hypothetical protein
177	 49.89	-2	168961..170742	-	593	37519746	-	gll0177	-	reverse transcriptase-like protein
178	 58.68	0	171416..172066	+	216	37519747	-	glr0178	-	hypothetical protein
179	 56.22	-1	172112..172312	+	66	37519748	-	gsr0179	-	hypothetical protein
180	 60.71	0	172498..172833	-	111	37519749	-	gll0180	-	hypothetical protein
181	 64.54	0	172840..173451	-	203	37519750	-	gll0181	-	hypothetical protein
182	 58.25	0	173588..173872	-	94	37519751	-	gsl0182	-	hypothetical protein
183	 66.77	0	174026..174970	-	314	37519752	-	gll0183	-	pseudouridine synthase
184	 52.08	-2	175511..175750	+	79	37519753	-	gsr0184	-	hypothetical protein
185	 66.67	0	175825..176400	+	191	37519754	-	glr0185	-	hypothetical protein
186	 61.64	0	176664..176882	+	72	37519755	-	gsr0186	-	hypothetical protein
187	 65.79	0	176887..177228	-	113	37519756	-	gll0187	-	hypothetical protein
188	 69.43	+1	177242..177820	-	192	37519757	-	gll0188	-	TetR family transcriptional regulatory protein
189	 66.87	+1	177871..178851	-	326	37519758	-	gll0189	-	oxidoreductase
190	 65.21	0	179009..179830	+	273	37519759	-	glr0190	-	monophosphatase
191	 61.95	0	179836..180450	+	204	37519760	-	glr0191	-	hypothetical protein
192	 63.96	0	180454..181413	-	319	37519761	nadA	gvip016	-	quinolinate synthetase
193	 66.86	+1	181556..182584	+	342	37519762	-	glr0193	-	3-deoxy-7-phosphoheptulonate synthase
194	 63.64	0	182701..184617	-	638	37519763	-	gll0194	-	1-deoxy-D-xylulose-5-phosphate synthase
195	 68.96	+1	184746..185792	-	348	37519764	mtnA	gll0195	-	methylthioribose-1-phosphate isomerase
196	 52.56	-2	186131..186520	+	129	37519765	-	glr0196	-	hypothetical protein
197	 63.96	0	186607..188937	-	776	37519766	-	gll0197	-	alpha-glucosidase
198	 52.62	-1	189511..190407	-	298	37519767	-	gll0198	-	bacterioopsin
199	 45.33	-2	190723..190872	-	49	37519768	-	gsl0199	-	CAB/ELIP/HLIP related protein
200	 48.76	-2	191454..191816	+	120	37519769	-	glr0200	-	hypothetical protein
201	 59.21	0	192212..192895	+	227	37519770	-	glr0201	-	hypothetical protein
202	 55.04	-1	193373..194344	-	323	37519771	-	gll0202	-	pilin gene inverting protein
203	 61.72	0	194739..195809	-	356	37519772	-	gll0203	-	group 2 sigma 70-type sigma factor
204	 60.70	0	195826..196932	+	368	37519773	-	glr0204	-	hypothetical protein
205	 62.19	0	197264..197866	-	200	37519774	-	gll0205	-	hypothetical protein
206	 47.83	-2	198027..198509	-	160	37519775	-	gll0206	-	hypothetical protein
207	 58.52	0	198509..199576	-	355	37519776	-	gll0207	-	hypothetical protein
208	 63.27	0	200444..200884	-	146	37519777	-	gll0208	-	hypothetical protein
209	 50.38	-2	202099..203154	-	351	37519778	-	gll0209	-	putative transposase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.