IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1500	 60.56	0	1611961..1612812	+	283	37521069	-	glr1500	-	hypothetical protein
1501	 62.03	0	1612816..1614906	-	696	37521070	-	gll1501	-	polyphosphate kinase
1502	 64.55	0	1615097..1616230	+	377	37521071	-	glr1502	-	hypothetical protein
1503	 60.65	0	1616288..1617367	-	359	37521072	-	gll1503	-	hypothetical protein
1504	 63.74	0	1617698..1619236	-	512	37521073	-	gll1504	-	aldehyde dehydrogenase
1505	 65.02	0	1619374..1619919	-	181	37521074	rimM	gll1505	-	16S rRNA-processing protein
1506	 66.67	0	1620272..1622260	+	662	37521075	rne	gvip208	-	ribonuclease E
1507	 68.34	+1	1622346..1622942	+	198	37521076	rnhA	gvip209	-	ribonuclease H
1508	 64.82	0	1623084..1627688	+	1534	37521077	glsF	gvip210	-	ferredoxin-dependent glutamate synthase
1509	 58.11	0	1627753..1628418	-	221	37521078	-	gll1509	-	hypothetical protein
1510	 59.23	0	1628393..1629064	+	223	37521079	-	glr1510	-	MerR family transcriptional regulator
1511	 66.17	0	1629061..1629867	+	268	37521080	-	glr1511	-	phosphomethylpyrimidine kinase
1512	 59.50	0	1629998..1630681	-	227	37521081	-	gll1512	-	hypothetical protein
1513	 59.19	0	1630847..1631608	-	253	37521082	-	gll1513	-	hypothetical protein
1514	 67.36	+1	1631738..1632604	-	288	37521083	-	gll1514	-	hypothetical protein
1515	 63.86	0	1632666..1633271	-	201	37521084	-	gll1515	-	hypothetical protein
1516	 64.52	0	1633372..1634721	+	449	37521085	-	glr1516	-	hypothetical protein
1517	 65.43	0	1634725..1636017	+	430	37521086	-	glr1517	-	hypothetical protein
1518	 65.08	0	1636041..1637363	+	440	37521087	-	glr1518	-	hypothetical protein
1519	 62.15	0	1637424..1638065	+	213	37521088	-	glr1519	-	hypothetical protein
1520	 61.19	0	1638157..1639965	-	602	37521089	-	gll1520	-	GTP-binding protein
1521	 63.79	0	1640050..1640397	-	115	37521090	-	gll1521	-	ferredoxin like protein
1522	 57.50	0	1640525..1640884	+	119	37521091	-	glr1522	-	hypothetical protein
1523	 58.06	0	1640963..1641613	+	216	37521092	-	glr1523	-	hypothetical protein
1524	 63.21	0	1641821..1643470	+	549	37521093	pyrG	gvip211	-	CTP synthetase
1525	 67.50	+1	1643583..1645028	+	481	37521094	-	glr1525	-	hypothetical protein
1526	 65.69	0	1645041..1646171	+	376	37521095	-	glr1526	-	glycosyltransferase
1527	 62.21	0	1646312..1648285	+	657	37521096	-	glr1527	-	hypothetical protein
1528	 64.29	0	1648275..1649744	-	489	37521097	gatA	gll1528	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
1529	 62.29	0	1649893..1650897	+	334	37521098	-	glr1529	-	pyruvate dehydrogenase E1 component alpha
1530	 58.64	0	1650902..1651885	+	327	37521099	-	glr1530	-	pyruvate dehydrogenase E1 component beta
1531	 59.62	0	1651931..1652455	-	174	37521100	-	gll1531	-	hypothetical protein
1532	 60.48	0	1652733..1653152	+	139	37521101	-	glr1532	-	two-component response regulator
1533	 64.07	0	1653181..1654683	-	500	37521102	-	gll1533	-	two-component hybrid sensor and regulator
1534	 59.42	0	1654875..1655288	+	137	37521103	-	glr1534	-	two-component response regulator
1535	 65.51	0	1655431..1657845	+	804	37521104	-	glr1535	-	alpha-glucosidase
1536	 63.09	0	1657861..1659117	-	418	37521105	-	gll1536	-	mechanosensitive channel protein
1537	 61.72	0	1659085..1660155	+	356	37521106	-	glr1537	-	hypothetical protein
1538	 63.22	0	1660155..1660706	+	183	37521107	-	glr1538	-	hypothetical protein
1539	 55.74	-1	1660745..1661485	-	246	37521108	-	gll1539	-	hypothetical protein
1540	 58.00	0	1661547..1661846	-	99	37521109	-	gsl1540	-	hypothetical protein
1541	 63.57	0	1662011..1662592	+	193	37521110	-	glr1541	-	TetR family transcriptional regulatory protein
1542	 66.50	0	1662655..1664991	+	778	37521111	-	glr1542	-	endopeptidase Clp ATP-binding chain
1543	 58.54	0	1665143..1665511	+	122	37521112	-	glr1543	-	hypothetical protein
1544	 53.59	-1	1665742..1665894	+	50	37521113	-	gsr1544	-	cytochrome D ubiquinol oxidase chain II
1545	 66.98	+1	1665947..1667209	-	420	37521114	-	gll1545	-	hypothetical protein
1546	 64.52	0	1667175..1668059	-	294	37521115	-	gll1546	-	hypothetical protein
1547	 61.02	0	1668189..1668365	+	58	37521116	-	gsr1547	-	hypothetical protein
1548	 66.75	0	1668372..1669580	+	402	37521117	-	glr1548	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1549	 63.67	0	1669577..1669843	+	88	37521118	-	gsr1549	-	hypothetical protein
1550	 65.28	0	1669885..1670532	+	215	37521119	-	glr1550	-	hypothetical protein
1551	 62.60	0	1670649..1671434	-	261	37521120	-	gll1551	-	hypothetical protein
1552	 64.53	0	1671792..1673426	+	544	37521121	-	glr1552	-	serine/threonine kinase
1553	 67.88	+1	1673436..1674509	-	357	37521122	-	gll1553	-	hypothetical protein
1554	 64.25	0	1674563..1676338	+	591	37521123	-	glr1554	-	serine proteinase
1555	 61.27	0	1676335..1676649	+	104	37521124	-	glr1555	-	hypothetical protein
1556	 58.69	0	1676705..1677055	-	116	37521125	-	gll1556	-	hypothetical protein
1557	 63.07	0	1677158..1678714	-	518	37521126	nirA	gvip212	-	ferredoxin-nitrite reductase
1558	 64.42	0	1678891..1679871	+	326	37521127	ntcB	gvip213	-	nitrogen assimilation transcriptional activator
1559	 65.61	0	1679871..1680908	+	345	37521128	-	glr1559	-	hypothetical protein
1560	 65.13	0	1680955..1681734	+	259	37521129	-	glr1560	-	hypothetical protein
1561	 60.03	0	1681743..1682315	-	190	37521130	-	gll1561	-	hypothetical protein
1562	 67.05	+1	1682369..1683676	-	435	37521131	-	gll1562	-	hypothetical protein
1563	 64.00	0	1683679..1685217	-	512	37521132	-	gll1563	-	hypothetical protein
1564	 52.91	-1	1685266..1685454	+	62	37521133	-	gsr1564	-	hypothetical protein
1565	 46.77	-2	1685491..1685862	+	123	37521134	-	glr1565	-	hypothetical protein
1566	 54.35	-1	1685928..1686398	+	156	37521135	-	glr1566	-	hypothetical protein
1567	 63.16	0	1686651..1687934	+	427	37521136	nrtA	gvip214	-	nitrate/nitrite transport system substrate-binding protein
1568	 62.17	0	1687967..1688812	+	281	37521137	nrtB	gvip215	-	nitrate/nitrite transport system permease protein
1569	 66.11	0	1688819..1690786	+	655	37521138	nrtC	gvip216	-	nitrate/nitrite transport system ATP-binding protein
1570	 62.41	0	1690801..1691598	+	265	37521139	nrtD	gvip217	-	nitrate/nitrite transport system ATP-binding protein
1571	 66.91	+1	1691588..1693666	+	692	37521140	narB	gvip218	-	nitrate reductase
1572	 57.34	0	1693681..1694109	+	142	37521141	-	glr1572	-	flavohemoprotein
1573	 56.35	-1	1694126..1694542	-	138	37521142	-	gll1573	-	hypothetical protein
1574	 55.69	-1	1694539..1694793	-	84	37521143	-	gsl1574	-	hypothetical protein
1575	 68.79	+1	1695176..1695880	-	234	37521144	nblB	gvip219	-	phycocyanin alpha phycocyanobilin lyase related protein NblB-like protein
1576	 62.82	0	1695973..1696803	+	276	37521145	-	glr1576	-	hypothetical protein
1577	 53.33	-1	1696819..1697043	+	74	37521146	-	gsr1577	-	hypothetical protein
1578	 63.40	0	1697538..1698425	-	295	37521147	menA	gvip220	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
1579	 69.43	+1	1698472..1699014	-	180	37521148	-	gll1579	-	hypothetical protein
1580	 61.09	0	1699078..1699722	-	214	37521149	folE	gvip221	-	GTP cyclohydrolase I
1581	 67.28	+1	1699746..1700402	-	218	37521150	-	gll1581	-	short chain dehydrogenase
1582	 68.53	+1	1700554..1701090	-	178	37521151	-	gll1582	-	hypothetical protein
1583	 63.83	0	1701130..1701552	-	140	37521152	-	gll1583	-	hypothetical protein
1584	 59.48	0	1701549..1702772	-	407	37521153	ndhA	gvip222	-	NADH dehydrogenase subunit H
1585	 62.34	0	1702787..1703248	-	153	37521154	-	gll1585	-	hypothetical protein
1586	 66.99	+1	1703404..1704639	+	411	37521155	-	glr1586	-	two-component sensor histidine kinase
1587	 68.39	+1	1704641..1705279	+	212	37521156	-	glr1587	-	two-component sensor histidine kinase
1588	 64.86	0	1705281..1705943	+	220	37521157	-	glr1588	-	two-component response regulator
1589	 63.42	0	1706008..1708134	+	708	37521158	-	glr1589	-	hypothetical protein
1590	 64.51	0	1708192..1708701	+	169	37521159	-	glr1590	-	hypothetical protein
1591	 67.24	+1	1708712..1709062	+	116	37521160	-	glr1591	-	hypothetical protein
1592	 69.03	+1	1709102..1709608	+	168	37521161	-	glr1592	-	hypothetical protein
1593	 68.92	+1	1709592..1710167	+	191	37521162	-	glr1593	-	hypothetical protein
1594	 62.52	0	1710203..1710949	+	248	37521163	-	glr1594	-	hypothetical protein
1595	 62.80	0	1711223..1713085	-	620	37521164	-	gll1595	-	alpha-amylase family protein
1596	 61.23	0	1713102..1713800	-	232	37521165	-	gll1596	-	phosphoglyceromutase
1597	 62.39	0	1713857..1715026	-	389	37521166	-	gll1597	-	transaldolase/EF-hand domain-containing protein
1598	 62.88	0	1715454..1716008	-	184	37521167	-	gll1598	-	hypothetical protein
1599	 61.97	0	1716193..1716618	+	141	37521168	rplK	gvip223	-	50S ribosomal protein L11
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.