IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
989	 59.40	0	1054900..1055133	-	77	37520558	-	gsl0989	-	hypothetical protein
990	 62.73	0	1055412..1056122	+	236	37520559	-	glr0990	-	protein phosphatase-like protein
991	 63.92	0	1056285..1057121	-	278	37520560	-	gll0991	-	hypothetical protein
992	 60.12	0	1057258..1057899	-	213	37520561	-	gll0992	-	hypothetical protein
993	 62.15	0	1058173..1058748	-	191	37520562	xer	gvip131	-	integrase/recombinase
994	 57.40	0	1059020..1062031	-	1003	37520563	-	gll0994	-	hypothetical protein
995	 59.09	0	1062061..1065042	-	993	37520564	-	gll0995	-	hypothetical protein
996	 66.18	0	1065139..1065552	-	137	37520565	-	gll0996	-	hypothetical protein
997	 60.62	0	1065716..1068097	+	793	37520566	-	glr0997	-	putative phosphoketolase
998	 58.93	0	1068192..1070762	+	856	37520567	-	glr0998	-	glycogen phosphorylase
999	 64.63	0	1070774..1071412	+	212	37520568	-	glr0999	-	hypothetical protein
1000	 64.53	0	1071423..1072640	+	405	37520569	-	glr1000	-	acetate kinase
1001	 61.90	0	1072648..1073592	-	314	37520570	-	gll1001	-	LysR family transcriptional regulator
1002	 64.72	0	1073721..1074029	-	102	37520571	-	gll1002	-	hypothetical protein
1003	 63.57	0	1074281..1076089	+	602	37520572	ndhF	gvip132	-	NAD(P)H-quinone oxidoreductase subunit F
1004	 63.70	0	1076127..1077641	+	504	37520573	ndhD	gvip133	-	NAD(P)H-quinone oxidoreductase subunit M
1005	 60.26	0	1077664..1078974	+	436	37520574	cupA	gvip134	-	hypothetical protein
1006	 63.95	0	1078996..1079400	+	134	37520575	-	glr1006	-	hypothetical protein
1007	 63.24	0	1079436..1080164	+	242	37520576	-	glr1007	-	hypothetical protein
1008	 65.98	0	1080179..1081201	-	340	37520577	-	gll1008	-	hypothetical protein
1009	 63.00	0	1081305..1081958	+	217	37520578	-	glr1009	-	hypothetical protein
1010	 63.51	0	1082038..1082670	+	210	37520579	-	glr1010	-	hypothetical protein
1011	 60.70	0	1082736..1083590	+	284	37520580	-	glr1011	-	hypothetical protein
1012	 67.42	+1	1083803..1084858	-	351	37520581	-	gll1012	-	iron(III) ABC transporter ATP-binding protein
1013	 68.44	+1	1084855..1086486	-	543	37520582	-	gll1013	-	iron(III) ABC transporter permease protein
1014	 62.55	0	1086493..1087560	-	355	37520583	-	gll1014	-	iron(III) ABC transporter iron (III)-binding protein
1015	 64.27	0	1087633..1088007	-	124	37520584	-	gll1015	-	hypothetical protein
1016	 63.40	0	1088255..1091647	+	1130	37520585	-	glr1016	-	two-component hybrid sensor and regulator
1017	 65.12	0	1091792..1092760	+	322	37520586	-	glr1017	-	aspartate-semialdehyde dehydrogenase
1018	 64.63	0	1092757..1093638	+	293	37520587	dapA	gvip135	-	dihydrodipicolinate synthase
1019	 62.87	0	1093697..1095460	+	587	37520588	-	glr1019	-	hypothetical protein
1020	 65.75	0	1095482..1097443	-	653	37520589	topA	gvip136	-	DNA topoisomerase I
1021	 39.06	-2	1097513..1098175	-	220	37520590	-	gll1021	-	hypothetical protein
1022	 39.37	-2	1098190..1099398	-	402	37520591	-	gll1022	-	hypothetical protein
1023	 58.12	0	1099548..1100705	-	385	37520592	-	gll1023	-	cation transporter
1024	 62.07	0	1100787..1101374	-	195	37520593	-	gll1024	-	hypothetical protein
1025	 59.98	0	1101395..1102471	-	358	37520594	fda	gvip137	-	fructose-bisphosphate aldolase
1026	 58.48	0	1102481..1102810	-	109	37520595	-	gll1026	-	hypothetical protein
1027	 62.98	0	1102925..1104553	-	542	37520596	groEL	gvip138	-	chaperonin GroEL
1028	 61.86	0	1104573..1104884	-	103	37520597	groES	gvip139	-	co-chaperonin GroES
1029	 62.32	0	1104981..1105877	-	298	37520598	-	gll1029	-	lipoyl synthase
1030	 59.02	0	1106585..1106911	-	108	37520599	-	gll1030	-	hypothetical protein
1031	 59.06	0	1106884..1107330	-	148	37520600	-	gll1031	-	hypothetical protein
1032	 53.94	-1	1107330..1107887	-	185	37520601	-	gll1032	-	hypothetical protein
1033	 65.10	0	1107922..1110594	-	890	37520602	mutS	gvip140	-	DNA mismatch repair protein
1034	 59.97	0	1110711..1111292	+	193	37520603	aat	glr1034	-	leucyl/phenylalanyl-tRNA--protein transferase
1035	 58.74	0	1111297..1111725	-	142	37520604	-	gll1035	-	hypothetical protein
1036	 61.79	0	1111762..1112130	-	122	37520605	-	gll1036	-	hypothetical protein
1037	 61.97	0	1112177..1112644	-	155	37520606	-	gll1037	-	hypothetical protein
1038	 68.98	+1	1112732..1114030	-	432	37520607	aroA	gvip141	-	3-phosphoshikimate 1-carboxyvinyltransferase
1039	 62.21	0	1114150..1114755	+	201	37520608	-	glr1039	-	hypothetical protein
1040	 62.24	0	1114986..1115708	-	240	37520609	tpiA	gvip142	-	triosephosphate isomerase
1041	 57.89	0	1115745..1116200	+	151	37520610	psb28-2	gvip143	-	photosystem II 13 kDa protein
1042	 64.64	0	1116223..1116765	+	180	37520611	ribH	gvip144	-	riboflavin synthase subunit beta
1043	 67.15	+1	1116773..1118020	+	415	37520612	-	glr1043	-	hypothetical protein
1044	 61.97	0	1118059..1118271	+	70	37520613	-	gsr1044	-	hypothetical protein
1045	 62.62	0	1118276..1119436	+	386	37520614	-	glr1045	-	deoxyhypusine synthase-like protein
1046	 51.37	-2	1120580..1121017	+	145	37520615	-	glr1046	-	hypothetical protein
1047	 65.40	0	1121072..1122100	-	342	37520616	-	gll1047	-	hypothetical protein
1048	 63.30	0	1122112..1122438	-	108	37520617	-	gll1048	-	hypothetical protein
1049	 56.85	-1	1122456..1123127	-	223	37520618	-	gll1049	-	hypothetical protein
1050	 62.55	0	1123328..1123570	+	80	37520619	-	gsr1050	-	hypothetical protein
1051	 63.75	0	1123637..1125043	-	468	37520620	argH	gvip145	-	argininosuccinate lyase
1052	 59.62	0	1125236..1126654	+	472	37520621	glnA	gvip146	-	glutamate--ammonia ligase
1053	 66.23	0	1126719..1127171	-	150	37520622	-	gll1053	-	putative cytidine and deoxycytidylate deaminase
1054	 63.51	0	1127255..1127950	+	231	37520623	-	glr1054	-	hypothetical protein
1055	 68.28	+1	1127993..1129972	-	659	37520624	-	gll1055	-	hypothetical protein
1056	 68.57	+1	1129977..1130660	-	227	37520625	-	gll1056	-	hypothetical protein
1057	 63.17	0	1130608..1131465	-	285	37520626	-	gll1057	-	hypothetical protein
1058	 59.21	0	1131464..1131691	+	75	37520627	-	gsr1058	-	hypothetical protein
1059	 62.15	0	1131678..1132784	+	368	37520628	-	glr1059	-	hypothetical protein
1060	 59.96	0	1132822..1133805	+	327	37520629	-	glr1060	-	hypothetical protein
1061	 57.04	-1	1133930..1136857	+	975	37520630	-	glr1061	-	kinesin light chain
1062	 63.72	0	1137408..1138799	+	463	37520631	-	glr1062	-	UDP-glucose dehydrogenase
1063	 64.54	0	1138836..1140059	+	407	37520632	-	glr1063	-	hypothetical protein
1064	 64.56	0	1140059..1141243	+	394	37520633	-	glr1064	-	hypothetical protein
1065	 64.66	0	1141298..1142545	+	415	37520634	-	glr1065	-	glycosyltransferase
1066	 65.16	0	1142548..1143606	+	352	37520635	-	glr1066	-	glycosyltransferase
1067	 68.04	+1	1143610..1145427	+	605	37520636	-	glr1067	-	HlyB/MsbA family ABC transporter
1068	 62.37	0	1145461..1146507	+	348	37520637	-	glr1068	-	nucleotide sugar epimerase
1069	 65.21	0	1146471..1147985	+	504	37520638	-	glr1069	-	hypothetical protein
1070	 68.09	+1	1148332..1148823	-	163	37520639	-	gll1070	-	hypothetical protein
1071	 60.84	0	1148828..1149136	-	102	37520640	-	gll1071	-	hypothetical protein
1072	 56.14	-1	1149213..1149383	-	56	37520641	-	gsl1072	-	hypothetical protein
1073	 56.15	-1	1149537..1149983	+	148	37520642	-	glr1073	-	large-conductive mechanosensitive channel
1074	 62.56	0	1150393..1151634	+	413	37520643	folC	gvip147	-	folylpolyglutamate synthase
1075	 66.96	+1	1151714..1154485	+	923	37520644	-	glr1075	-	acetyl-CoA synthetase
1076	 65.54	0	1154618..1155328	+	236	37520645	-	glr1076	-	ABC transporter ATP-binding protein
1077	 66.32	0	1155303..1157627	+	774	37520646	-	glr1077	-	hypothetical protein
1078	 60.73	0	1157624..1158145	-	173	37520647	-	gll1078	-	hypothetical protein
1079	 64.33	0	1158172..1159626	+	484	37520648	-	glr1079	-	bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein
1080	 64.87	0	1159633..1160580	-	315	37520649	-	gll1080	-	hypothetical protein
1081	 63.04	0	1160657..1160932	-	91	37520650	-	gsl1081	-	hypothetical protein
1082	 59.41	0	1161030..1161635	-	201	37520651	-	gll1082	-	hypothetical protein
1083	 52.74	-1	1161616..1161816	-	66	37520652	petM	gsl1083	-	cytochrome b6-f complex subunit PetM
1084	 64.04	0	1161887..1163065	+	392	37520653	sat	glr1084	-	sulfate adenylyltransferase
1085	 62.81	0	1163232..1163879	-	215	37520654	-	gll1085	-	hypothetical protein
1086	 62.83	0	1163960..1164454	+	164	37520655	-	glr1086	-	hypothetical protein
1087	 62.53	0	1164458..1165714	-	418	37520656	-	gll1087	-	hypothetical protein
1088	 62.65	0	1165958..1167151	-	397	37520657	-	gll1088	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.