IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
892	 67.33	0	929070..930419	+	449	162146738	otsA	GDI0916	-	putative alpha,alpha-trehalose-phosphate synthase
893	 73.69	+1	930416..930970	+	184	162146739	-	GDI0917	-	hypothetical protein
894	 55.93	-1	930924..931100	-	58	162146740	-	GDI0918	-	hypothetical protein
895	 68.95	0	931099..933327	+	742	162146741	nadE	GDI0919	-	NAD synthetase
896	 71.38	0	933346..936207	-	953	162146742	-	GDI0920	-	putative glycosyl transferase
897	 66.07	0	936319..937668	+	449	162146743	-	GDI0921	-	putative hemolysin-type calcium-binding
898	 70.74	0	937677..940451	+	924	162146744	-	GDI0922	-	glycosyl transferase, group 1 family protein
899	 62.96	0	940759..941028	+	89	162146745	hupA	GDI0923	-	putative DNA-binding protein HU-alpha
900	 70.97	0	941421..942071	-	216	162146746	-	GDI0924	-	hypothetical protein
901	 74.21	+1	942174..942995	-	273	162146747	proC	GDI0925	-	putative pyrroline-5-carboxylate reductase
902	 67.29	0	942992..943633	-	213	162146748	-	GDI0926	-	hypothetical protein
903	 74.07	+1	943698..944021	-	107	162146749	-	GDI0927	-	hypothetical protein
904	 69.02	0	944188..945165	+	325	162146750	hldD	GDI0928	-	putative ADP-L-glycero-D-manno-heptose-6-epimerase
905	 67.97	0	945220..946062	+	280	162146751	-	GDI0929	-	putative prolipoprotein diacylglyceryl transferase
906	 73.24	+1	946059..947078	+	339	162146752	-	GDI0930	-	hypothetical protein
907	 74.21	+1	947090..947911	+	273	162146753	-	GDI0931	-	hypothetical protein
908	 75.34	+1	947908..948864	+	318	162146754	-	GDI0932	-	hypothetical protein
909	 66.46	0	948992..949972	+	326	162146755	prs	GDI0933	-	ribose-phosphate pyrophosphokinase
910	 70.33	0	950056..950655	+	199	162146756	gpmB	GDI0934	-	phosphoglycerate mutase gpmB
911	 67.95	0	950788..951408	+	206	162146757	rplY	GDI0935	-	50S ribosomal protein L25
912	 66.11	0	951463..952002	+	179	162146758	pth	GDI0936	-	peptidyl-tRNA hydrolase
913	 67.21	0	952002..953096	+	364	162146759	-	GDI0937	-	translation-associated GTPase
914	 62.39	0	953086..953319	-	77	162146760	-	GDI0938	-	hypothetical protein
915	 70.06	0	954626..955273	+	215	162146761	nadD	GDI0941	-	nicotinic acid mononucleotide adenylyltransferase
916	 66.22	0	955381..955827	+	148	162146762	-	GDI0942	-	hypothetical protein
917	 70.80	0	955863..956249	+	128	162146763	-	GDI0943	-	hypothetical protein
918	 67.64	0	956400..957116	-	238	162146764	-	GDI0944	-	putative CHAP protein
919	 64.10	0	957436..957786	-	116	162146765	-	GDI0945	-	putative endoribonuclease
920	 68.34	0	958510..959583	-	357	162146766	-	GDI0947	-	hypothetical protein
921	 67.82	0	959714..960409	+	231	162146767	-	GDI0948	-	Beta-lactamase-like protein
922	 65.76	0	960409..960960	+	183	162146768	-	GDI0949	-	hypothetical protein
923	 65.17	0	960965..962101	-	378	162146769	-	GDI0950	-	putative patatin-like phospholipase
924	 61.27	0	967982..969649	-	555	162146770	-	GDI0951	-	putative DNA recombinase
925	 65.64	0	969654..969848	-	64	162146771	-	GDI0952	-	hypothetical protein
926	 65.26	0	970241..972298	+	685	162146772	-	GDI0953	-	hypothetical protein
927	 58.37	-1	972402..973124	-	240	162146773	-	GDI0954	-	hypothetical protein
928	 55.69	-1	973409..973900	+	163	162146774	-	GDI0955	-	putative transposase
929	 60.50	0	974485..975165	-	226	162146775	-	GDI0957	-	hypothetical protein
930	 64.16	0	975162..976079	-	305	162146776	pdxA	GDI0958	-	putative 4-hydroxythreonine-4-phosphate dehydrogenase 2
931	 64.10	0	976242..977099	+	285	162146777	-	GDI0959	-	LysR family transcriptional regulator
932	 56.05	-1	977390..978661	+	423	162146778	-	GDI0960	-	hypothetical protein
933	 57.36	-1	978658..980484	+	608	162146779	-	GDI0961	-	hypothetical protein
934	 57.26	-1	980610..982151	+	513	162146780	-	GDI0962	-	putative serine/threonine protein kinase
935	 58.43	-1	982232..982498	+	88	162146781	-	GDI0963	-	putative transposase
936	 63.41	0	982522..983349	+	275	162146782	-	GDI0964	-	putative transposase
937	 64.01	0	983509..985695	-	728	162146783	recD	GDI0965	-	putative exodeoxyribonuclease V alpha chain
938	 62.85	0	985855..986142	+	95	162146784	-	GDI0966	-	hypothetical protein
939	 64.50	0	986139..987845	+	568	162146785	-	GDI0967	-	putative resolvase
940	 62.96	0	987916..988320	+	134	162146786	-	GDI0968	-	hypothetical protein
941	 50.85	-2	988347..988523	+	58	162146787	-	GDI0969	-	putative integrase (fragment)
942	 51.98	-2	988783..989463	+	226	162146788	-	GDI0970	-	hypothetical protein
943	 48.96	-2	989467..990522	+	351	162146789	-	GDI0971	-	hypothetical protein
944	 58.02	-1	990874..991347	-	157	162146790	-	GDI0972	-	putative transposase
945	 60.07	-1	991532..991819	-	95	162146791	-	GDI0973	-	putative transposase
946	 49.11	-2	991969..992304	-	111	162146792	-	GDI0974	-	hypothetical protein
947	 69.42	0	992342..993574	+	410	162146793	-	GDI0975	-	putative integrase
948	 65.67	0	993571..994374	+	267	162146794	-	GDI0976	-	putative insertion sequence
949	 53.02	-2	994371..995447	+	358	162146795	-	GDI0977	-	hypothetical protein
950	 54.30	-2	995491..995781	+	96	162146796	-	GDI0978	-	hypothetical protein
951	 61.10	0	995922..996980	-	352	162146797	-	GDI0979	-	putative integrase
952	 61.43	0	997143..998021	-	292	162146798	-	GDI0980	-	putative integrase
953	 62.82	0	998018..998329	-	103	162146799	-	GDI0981	-	putative transposase
954	 48.97	-2	998399..999172	-	257	162146800	-	GDI0982	-	hypothetical protein
955	 61.15	0	999258..999728	+	156	162146801	-	GDI0983	-	putative transposase
956	 54.55	-2	999725..1000087	+	120	162146802	-	GDI0984	-	putative transposase
957	 46.57	-2	1000289..1001542	+	417	162146803	-	GDI0985	-	hypothetical protein
958	 61.23	0	1001646..1002785	-	379	162146804	-	GDI0986	-	major facilitator transporter superfamily protein
959	 56.36	-1	1002815..1003804	-	329	162146805	-	GDI0987	-	putative instegrase
960	 59.26	-1	1003901..1004224	+	107	162146806	-	GDI0988	-	ArsR family transcriptional regulator
961	 54.52	-2	1004278..1005174	+	298	162146807	-	GDI0989	-	putative 2-dehydropantoate 2-reductase
962	 66.41	0	1005431..1006963	+	510	162146808	-	GDI0990	-	putative integrase
963	 63.46	0	1006953..1007732	+	259	162146809	-	GDI0991	-	putative transposase
964	 58.33	-1	1007990..1008433	-	147	162146810	-	GDI0992	-	putative transcriptional regulatory protein
965	 61.17	0	1008529..1009728	+	399	162146811	-	GDI0993	-	major facilitator superfamily
966	 59.28	-1	1009922..1010530	-	202	162146812	-	GDI0994	-	NAD(P)H nitroreductase
967	 64.87	0	1010577..1011413	-	278	162146813	-	GDI0995	-	putative fumarylacetoacetate (FAA) hydrolase protein
968	 65.01	0	1011430..1012155	-	241	162146814	-	GDI0996	-	hypothetical protein
969	 68.22	0	1012152..1013693	-	513	162146815	oprJ	GDI0997	-	putative outer membrane protein oprJ
970	 68.80	0	1013728..1014804	-	358	162146816	-	GDI0998	-	HlyD family secretion protein
971	 59.88	-1	1014864..1015025	-	53	162146817	-	GDI0999	-	hypothetical protein
972	 64.05	0	1015058..1016779	-	573	162146818	-	GDI1000	-	putative multidrug efflux transporter protein
973	 63.52	0	1016972..1017925	+	317	162146819	-	GDI1001	-	LysR family transcriptional regulator
974	 64.16	0	1017913..1018671	-	252	162146820	-	GDI1002	-	GntR family transcriptional regulator
975	 61.50	0	1018876..1019475	+	199	162146821	gstA	GDI1003	-	putative glutathione S-transferase
976	 60.18	-1	1019493..1020062	+	189	162146822	-	GDI1004	-	hypothetical protein
977	 63.62	0	1020052..1020969	-	305	162146823	-	GDI1005	-	LysR family transcriptional regulator
978	 60.73	0	1021071..1021862	+	263	162146824	-	GDI1006	-	putative NAD(P)H oxidoreductase
979	 61.29	0	1021979..1022740	+	253	162146825	-	GDI1007	-	LysR family transcriptional regulator
980	 61.01	0	1022770..1023795	-	341	162146826	-	GDI1008	-	putative integrase
981	 60.29	-1	1024290..1025183	+	297	162146827	apbA	GDI1009	-	2-dehydropantoate 2-reductase
982	 56.91	-1	1025350..1025595	-	81	162146828	-	GDI1010	-	hypothetical protein
983	 64.60	0	1025592..1026752	-	386	162146829	trbI	GDI1011	-	putative conjugation TrbI-like protein
984	 65.86	0	1026749..1027735	-	328	162146830	trbG	GDI1012	-	putative conjugal transfer protein trbG
985	 66.52	0	1027735..1028415	-	226	162146831	trbF	GDI1013	-	putative conjugal transfer protein; TrbF
986	 67.22	0	1028418..1029677	-	419	162146832	trbL	GDI1014	-	putative conjugal transfer protein; TrbL
987	 63.59	0	1029954..1030700	-	248	162146833	trbJ	GDI1015	-	putative conjugal transfer protein; TrbJ
988	 66.58	0	1030697..1033123	-	808	162146834	trbE	GDI1016	-	putative conjugal transfer protein trbE
989	 68.91	0	1033131..1033397	-	88	162146835	trbD	GDI1017	-	putative conjugal transfer protein; TrbD
990	 61.64	0	1033397..1033714	-	105	162146836	trbC	GDI1018	-	conjugal transfer protein TrbC
991	 70.69	0	1033720..1034688	-	322	162146837	trbB	GDI1019	-	putative type II/IV secretion system protein trbB
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.