IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 69.50	0	572436..573848	+	470	162146389	ttgC	GDI0564	-	putative toluene efflux pump outer membrane protein ttgC precursor
544	 67.55	0	573888..574676	-	262	162146390	-	GDI0565	-	putative glyoxalase
545	 69.59	0	574725..575306	-	193	162146391	-	GDI0566	-	putative nitrate reductase protein
546	 64.69	0	575485..576747	+	420	162146392	-	GDI0567	-	hypothetical protein
547	 59.87	-1	576850..577320	+	156	162146393	-	GDI0568	-	hypothetical protein
548	 69.77	0	577482..578384	+	300	162146394	-	GDI0569	-	hypothetical protein
549	 66.16	0	578577..579563	+	328	162146395	nadA	GDI0570	-	quinolinate synthetase A
550	 75.08	+1	579560..581116	+	518	162146396	nadB	GDI0571	-	putative L-aspartate oxidase
551	 71.35	0	581113..581967	+	284	162146397	nadC	GDI0572	-	nicotinate-nucleotide pyrophosphorylase
552	 69.83	0	582023..582496	+	157	162146398	-	GDI0573	-	putative low molecular weight phosphotyrosine protein phosphatase
553	 70.91	0	582512..583642	+	376	162146399	-	GDI0574	-	putative L-sorbosone dehydrogenase
554	 67.22	0	583925..584470	-	181	162146400	ahpD	GDI0575	-	alkylhydroperoxidase protein
555	 62.62	0	584673..585215	-	180	162146401	-	GDI0576	-	peroxiredoxin protein
556	 51.22	-2	585241..585363	+	40	162146402	-	GDI0577	-	hypothetical protein
557	 69.13	0	585360..586292	+	310	162146403	-	GDI0578	-	LysR family transcriptional regulator
558	 55.56	-1	586412..586537	+	41	162146404	rpmJ	GDI0579	-	50S ribosomal protein L36
559	 73.33	+1	586552..587241	+	229	162146405	-	GDI0580	-	hypothetical protein
560	 69.39	0	587256..588026	-	256	162146406	ubiE	GDI0581	-	ubiquinone/menaquinone biosynthesis methyltransferase ubi
561	 76.36	+1	588204..588884	+	226	162146407	-	GDI0582	-	hypothetical protein
562	 70.20	0	588881..589390	+	169	162146408	-	GDI0583	-	putative amidase protein
563	 67.79	0	589527..589793	+	88	162146409	-	GDI0584	-	putative transporter protein
564	 69.47	0	589790..590467	+	225	162146410	mtnB	GDI0585	-	hypothetical protein
565	 67.96	0	590464..591003	+	179	162146411	mtnD	GDI0586	-	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
566	 71.01	0	591017..591730	+	237	162146412	-	GDI0587	-	enolase-phosphatase
567	 71.62	0	591727..592674	+	315	162146413	ribF	GDI0588	-	putative riboflavin biosynthesis protein
568	 68.66	0	592780..595686	+	968	162146414	ileS	GDI0589	-	isoleucyl-tRNA synthetase
569	 68.76	0	595683..596207	+	174	162146415	lspA	GDI0590	-	putative lipoprotein signal peptidase
570	 70.72	0	596204..596770	+	188	162146416	-	GDI0591	-	hypothetical protein
571	 74.79	+1	596827..598698	+	623	162146417	mutL	GDI0592	-	putative DNA mismatch repair protein mutL
572	 67.17	0	598799..600373	+	524	162146418	nuoM	GDI0593	-	putative NADH-quinone oxidoreductase chain M
573	 67.35	0	600519..601541	+	340	162146419	-	GDI0594	-	hypothetical protein
574	 61.73	0	601555..602202	-	215	162146420	-	GDI0595	-	NAD(P)H nitroreductase
575	 68.00	0	602192..603316	-	374	162146421	-	GDI0596	-	hypothetical protein
576	 65.22	0	603331..604161	-	276	162146422	-	GDI0597	-	hypothetical protein
577	 67.15	0	604148..605380	-	410	162146423	-	GDI0598	-	hypothetical protein
578	 63.84	0	605383..605700	-	105	162146424	-	GDI0599	-	putative antibiotic biosynthesis monooxygenase
579	 70.39	0	605756..607150	-	464	162146425	-	GDI0600	-	GntR family transcriptional regulator
580	 76.08	+1	607154..608056	-	300	162146426	-	GDI0601	-	chromosome replication initiation inhibitor protein
581	 62.28	0	608118..609461	+	447	162146427	-	GDI0602	-	putative transposase
582	 67.56	0	609515..610969	-	484	162146428	-	GDI0603	-	hypothetical protein
583	 73.11	+1	611123..611758	+	211	162146429	-	GDI0604	-	putative lysine exporter protein
584	 71.25	0	611910..613283	+	457	162146430	-	GDI0605	-	putative sugar transporter
585	 71.69	0	613283..615313	+	676	162146431	-	GDI0606	-	putative beta-N-acetylhexosaminidase
586	 69.20	0	615333..616478	-	381	162146432	-	GDI0607	-	putative aspartate aminotransferase
587	 67.99	0	616564..617922	-	452	162146433	-	GDI0608	-	putative galactose-proton symporter
588	 50.94	-2	617954..618112	-	52	162146434	-	GDI0609	-	hypothetical protein
589	 69.75	0	618218..619837	+	539	162146435	pckA	GDI0610	-	phosphoenolpyruvate carboxykinase
590	 73.91	+1	619933..620733	+	266	162146436	-	GDI0611	-	putative xylose isomerase
591	 72.49	+1	620795..621601	+	268	162146437	aroD	GDI0612	-	putative 3-dehydroquinate dehydratase
592	 66.40	0	621861..623741	+	626	162146438	thiC	GDI0613	-	thiamine biosynthesis protein ThiC
593	 69.17	0	623839..625314	-	491	162146439	-	GDI0614	-	putative cysteine desulfurase
594	 63.85	0	625423..625884	+	153	162146440	asnC	GDI0615	-	AsnC family transcriptional regulator
595	 66.27	0	626735..627244	+	169	162146441	-	GDI0617	-	putative transposase
596	 63.83	0	627241..627804	+	187	162146442	-	GDI0618	-	putative transposase
597	 61.78	0	628735..629532	+	265	162146443	-	GDI0619	-	putative transposase
598	 51.99	-2	630484..630960	+	158	162146444	asnC	GDI0620	-	AsnC family transcriptional regulator
599	 57.78	-1	631149..631328	-	59	162146445	-	GDI0621	-	putative CsbD-like protein
600	 64.17	0	631490..632089	+	199	162146446	-	GDI0622	-	hypothetical protein
601	 73.84	+1	632092..633318	-	408	162146447	cdaR	GDI0623	-	putative carbohydrate diacid regulator
602	 67.88	0	633476..634792	+	438	162146448	-	GDI0624	-	putative transporter protein
603	 72.54	+1	634843..635982	+	379	162146449	glxK	GDI0625	-	glycerate kinase
604	 65.20	0	636241..636444	-	67	162146450	-	GDI0626	-	hypothetical protein
605	 61.44	0	636525..636677	+	50	162146451	-	GDI0627	-	hypothetical protein
606	 64.10	0	636667..637794	+	375	162146452	-	GDI0628	-	inositol-3-phosphate synthase
607	 65.55	0	637794..638510	+	238	162146453	hasC	GDI0629	-	putative UTP--glucose-1-phosphate uridylyltransferase
608	 67.72	0	638540..639484	+	314	162146454	pssA	GDI0630	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
609	 65.64	0	639493..640566	-	357	162146455	-	GDI0631	-	hypothetical protein
610	 66.58	0	640563..641654	-	363	162146456	-	GDI0632	-	hypothetical protein
611	 69.86	0	641830..643239	-	469	162146457	-	GDI0633	-	glycosyl transferase
612	 66.14	0	643434..645329	+	631	162146458	kup1	GDI0634	-	potassium transport system protein
613	 67.72	0	645392..645961	+	189	162146459	-	GDI0635	-	hypothetical protein
614	 63.95	0	646082..646669	+	195	162146460	-	GDI0636	-	hypothetical protein
615	 71.19	0	646696..647469	-	257	162146461	-	GDI0637	-	putative prephenate dehydrogenase
616	 71.49	0	647633..648130	-	165	162146462	-	GDI0638	-	putative acetyltransferase
617	 66.85	0	648291..649901	+	536	162146463	-	GDI0639	-	hypothetical protein
618	 66.15	0	649943..651478	-	511	162146464	aldA	GDI0640	-	aldehyde dehydrogenase
619	 70.99	0	651556..652572	-	338	162146465	-	GDI0641	-	Fis family transcriptional regulator
620	 69.95	0	652647..653042	-	131	162146466	-	GDI0642	-	hypothetical protein
621	 70.09	0	653211..654614	+	467	162146467	galP	GDI0643	-	putative galactose-proton symporter
622	 67.66	0	654776..655582	-	268	162146468	-	GDI0644	-	hypothetical protein
623	 55.88	-1	655591..655794	-	67	162146469	-	GDI0645	-	hypothetical protein
624	 65.24	0	655842..656051	-	69	162146470	-	GDI0646	-	hypothetical protein
625	 67.80	0	656133..658592	-	819	162146471	mdtC	GDI0647	-	putative multidrug resistance protein
626	 64.14	0	658867..659421	-	184	162146472	-	GDI0648	-	hypothetical protein
627	 63.84	0	659474..659827	+	117	162146473	-	GDI0649	-	hypothetical protein
628	 71.69	0	659829..660644	+	271	162146474	-	GDI0650	-	putative iron permease protein
629	 65.35	0	660655..661185	+	176	162146475	-	GDI0651	-	hypothetical protein
630	 71.03	0	661198..661770	-	190	162146476	-	GDI0652	-	hypothetical protein
631	 69.20	0	661835..662347	-	170	162146477	-	GDI0653	-	manganese transport regulator MntR
632	 69.59	0	662581..663882	+	433	162146478	mntH	GDI0654	-	putative manganese transport protein mntH
633	 73.96	+1	663887..664873	+	328	162146479	cobD	GDI0655	-	putative cobalamin biosynthesis protein
634	 73.24	+1	664870..665523	+	217	162146480	-	GDI0656	-	putative nitroreductase protein
635	 64.07	0	665525..665755	-	76	162146481	-	GDI0657	-	putative tautomerase protein
636	 63.23	0	665989..667878	+	629	162146482	-	GDI0658	-	hypothetical protein
637	 68.11	0	667880..668779	-	299	162146483	-	GDI0659	-	LysR family transcriptional regulator
638	 64.92	0	668845..669933	+	362	162146484	-	GDI0660	-	hypothetical protein
639	 66.34	0	669948..670871	+	307	162146485	-	GDI0661	-	hypothetical protein
640	 63.30	0	670921..671247	+	108	162146486	-	GDI0662	-	putative protein phnA
641	 74.96	+1	671219..671845	-	208	162146487	-	GDI0663	-	putative phosphoglycerate mutase protein
642	 68.38	0	671827..672585	-	252	162146488	fecE	GDI0664	-	putative iron(III) dicitrate transport ATP-binding protein fecE
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.