IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3659	 68.02	0	3825461..3826420	+	319	162149505	nitA	GDI3743	-	putative nitrilase
3660	 70.70	0	3826417..3827532	+	371	162149506	-	GDI3744	-	hypothetical protein
3661	 69.98	0	3827547..3828119	+	190	162149507	-	GDI3745	-	hypothetical protein
3662	 73.76	+1	3828119..3829105	+	328	162149508	hypE	GDI3746	-	hypothetical protein
3663	 74.66	+1	3829102..3830277	+	391	162149509	-	GDI3747	-	putative glycosiltransferase
3664	 67.00	0	3830279..3830575	+	98	162149510	-	GDI3748	-	hypothetical protein
3665	 66.59	0	3830572..3831819	+	415	162149511	-	GDI3749	-	hypothetical protein
3666	 71.72	0	3831835..3833595	+	586	162149512	-	GDI3750	-	putative propionate--CoA ligase
3667	 71.34	0	3833842..3834612	+	256	162149513	-	GDI3751	-	putative glyoxalase/Bleomycin resistance protein/dioxygenase
3668	 69.35	0	3835117..3836346	-	409	162149514	-	GDI3752	-	putative sugar isomerase
3669	 68.06	0	3836363..3837223	-	286	162149515	-	GDI3753	-	putative glucose and ribitol dehydrogenase
3670	 60.76	0	3837336..3837572	-	78	162149516	-	GDI3754	-	hypothetical protein
3671	 64.66	0	3837673..3837921	-	82	162149517	-	GDI3755	-	hypothetical protein
3672	 73.75	+1	3838063..3838824	+	253	162149518	-	GDI3756	-	hypothetical protein
3673	 69.66	0	3838775..3839878	-	367	162149519	-	GDI3757	-	putative glycerophosphoryl diester phosphodiesterase
3674	 64.58	0	3839916..3842360	-	814	162149520	-	GDI3758	-	putative tonB-dependent receptor
3675	 71.17	0	3842650..3843138	+	162	162149521	marR	GDI3759	-	putative transcriptional regulator marR
3676	 72.96	+1	3843135..3845360	+	741	162149522	-	GDI3760	-	hypothetical protein
3677	 67.65	0	3845578..3846489	+	303	162149523	-	GDI3761	-	HlyD family secretion protein
3678	 70.31	0	3846681..3848216	+	511	162149524	oprM	GDI3762	-	putative Outer membrane protein oprM
3679	 69.14	0	3848409..3849782	-	457	162149525	clcB	GDI3763	-	putative chloride channel protein
3680	 70.08	0	3850114..3851520	+	468	162149526	-	GDI3764	-	putative L-sorbosone dehydrogenase
3681	 69.06	0	3851520..3851936	+	138	162149527	-	GDI3765	-	hypothetical protein
3682	 62.04	0	3851917..3852564	-	215	162149528	-	GDI3766	-	hypothetical protein
3683	 60.94	0	3852675..3853373	+	232	162149529	-	GDI3767	-	hypothetical protein
3684	 62.80	0	3853434..3854960	-	508	162149530	-	GDI3768	-	putative DNA mismatch repair protein MutS
3685	 64.29	0	3854957..3856552	-	531	162149531	-	GDI3769	-	putative DNA mismatch repair protein MutS
3686	 58.19	-1	3856707..3856883	+	58	162149532	-	GDI3770	-	hypothetical protein
3687	 68.73	0	3856880..3857704	+	274	162149533	-	GDI3771	-	hypothetical protein
3688	 65.25	0	3857922..3858344	+	140	162149534	crcB	GDI3772	-	putative chromosome condensation protein
3689	 68.48	0	3858424..3859029	-	201	162149535	acpD	GDI3773	-	putative acyl carrier protein phosphodiesterase
3690	 65.39	0	3859107..3859499	+	130	162149536	-	GDI3774	-	putative transcriptional regulator
3691	 56.86	-1	3859624..3859878	+	84	162149537	-	GDI3775	-	hypothetical protein
3692	 59.33	-1	3859994..3861301	+	435	162149538	ddeI	GDI3776	-	putative cytosine-specifi methyltransferase DdeI
3693	 55.10	-1	3861185..3862126	-	313	162149539	-	GDI3777	-	hypothetical protein
3694	 58.55	-1	3862123..3864438	-	771	162149540	-	GDI3778	-	hypothetical protein
3695	 58.87	-1	3864624..3865085	+	153	162149541	-	GDI3779	-	putative repair endonuclease
3696	 59.62	-1	3865082..3865294	+	70	162149542	-	GDI3780	-	hypothetical protein
3697	 60.40	-1	3865512..3865910	+	132	162149543	-	GDI3781	-	transposase
3698	 63.57	0	3866051..3866599	+	182	162149544	-	GDI3782	-	putative transposase
3699	 60.70	0	3866969..3867739	+	256	162149545	-	GDI3783	-	putative transposase
3700	 65.97	0	3867904..3868332	-	142	162149546	-	GDI3784	-	hypothetical protein
3701	 72.54	+1	3868402..3869304	-	300	162149547	-	GDI3785	-	LysR family transcriptional regulator
3702	 68.22	0	3869487..3870260	+	257	162149548	-	GDI3786	-	short chain dehydrogenase
3703	 70.71	0	3870328..3871737	+	469	162149549	aapA	GDI3787	-	putative amino acid permease
3704	 71.48	0	3871714..3872544	-	276	162149550	panB	GDI3788	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3705	 73.58	+1	3872587..3873165	-	192	162149551	-	GDI3789	-	putative acetyltransferase
3706	 71.85	0	3873204..3875228	-	674	162149552	asmA	GDI3790	-	putative outer membrane biogenesis protein
3707	 74.04	+1	3875239..3877761	-	840	162149553	mscS	GDI3791	-	putative mechanosensitive ion channel
3708	 68.76	0	3878114..3879022	-	302	162149554	-	GDI3792	-	putative ribonuclease
3709	 65.89	0	3879053..3879181	-	42	162149555	-	GDI3793	-	hypothetical protein
3710	 62.75	0	3879369..3879521	-	50	162149556	-	GDI3794	-	hypothetical protein
3711	 68.14	0	3879518..3880198	-	226	162149557	-	GDI3795	-	TetR family transcriptional regulator
3712	 70.36	0	3880307..3881983	+	558	162149558	oprM	GDI3796	-	putative outer membrane protein
3713	 63.29	0	3882159..3882572	+	137	162149559	dksA	GDI3797	-	putative DnaK suppressor protein
3714	 65.14	0	3882750..3883076	-	108	162149560	-	GDI3798	-	hypothetical protein
3715	 64.61	0	3883070..3883507	-	145	162149561	-	GDI3799	-	hypothetical protein
3716	 57.00	-1	3883528..3883734	+	68	162149562	-	GDI3800	-	hypothetical protein
3717	 60.91	0	3883731..3884147	+	138	162149563	-	GDI3801	-	hypothetical protein
3718	 54.76	-1	3884439..3885152	-	237	162149564	-	GDI3802	-	putative transposase
3719	 66.84	0	3885183..3885776	+	197	162149565	-	GDI3803	-	putative transposase
3720	 64.10	0	3885773..3886240	+	155	162149566	-	GDI3804	-	putative transposase
3721	 60.77	0	3887916..3888695	+	259	162149567	-	GDI3806	-	putative transposase
3722	 59.62	-1	3888945..3891344	+	799	162149568	tonB	GDI3807	-	putative TonB-dependent receptor
3723	 66.21	0	3891346..3892863	+	505	162149569	tppB	GDI3808	-	putative tripeptide permease
3724	 64.71	0	3892790..3893554	-	254	162149570	-	GDI3809	-	hypothetical protein
3725	 58.94	-1	3893616..3893822	-	68	162149571	-	GDI3810	-	putative cold shock protein
3726	 69.50	0	3894216..3894356	+	46	162149572	-	GDI3811	-	hypothetical protein
3727	 70.76	0	3894809..3897376	+	855	162149573	-	GDI3812	-	GGDEF family signaling protein
3728	 69.01	0	3897427..3898494	+	355	162149574	pstC	GDI3813	-	putative phosphate transport system permease protein pstC
3729	 73.93	+1	3898496..3899404	+	302	162149575	-	GDI3814	-	putative phosphate transport system permease protein
3730	 67.87	0	3899406..3900236	+	276	162149576	pstB	GDI3815	-	phosphate import ATP-binding protein pstB
3731	 69.68	0	3900253..3900948	+	231	162149577	phoU	GDI3816	-	phosphate transporter PhoU
3732	 68.19	0	3900973..3901692	+	239	162149578	phoB	GDI3817	-	putative phosphate regulon transcriptional regulatory protein phoB
3733	 72.54	+1	3901730..3902938	+	402	162149579	phoR	GDI3818	-	putative phosphate regulon, two-component sensor histidine kinase, phoR
3734	 68.36	0	3903102..3904106	+	334	162149580	-	GDI3819	-	phosphate-binding periplasmic protein precursor
3735	 53.22	-2	3904210..3904380	+	56	162149581	-	GDI3820	-	hypothetical protein
3736	 61.13	0	3904626..3905366	+	246	162149582	-	GDI3821	-	putative secreted protein
3737	 60.10	-1	3905386..3906222	-	278	162149583	-	GDI3822	-	putative transposase
3738	 61.76	0	3906318..3907316	+	332	162149584	-	GDI3823	-	hypothetical protein
3739	 67.33	0	3907528..3908883	+	451	162149585	-	GDI3824	-	putative phosphate transporter
3740	 65.23	0	3908941..3909219	-	92	162149586	-	GDI3825	-	putative plasmid maintenance system antidote protein
3741	 58.51	-1	3909236..3909517	-	93	162149587	-	GDI3826	-	putative plasmid maintenance system killer
3742	 61.78	0	3909680..3910477	+	265	162149588	-	GDI3827	-	putative transposase
3743	 65.56	0	3910494..3911219	-	241	162149589	-	GDI3828	-	putative ABC transporter
3744	 71.00	0	3911216..3912832	-	538	162149590	-	GDI3829	-	putative transport protein
3745	 67.21	0	3912995..3913735	+	246	162149591	-	GDI3830	-	hypothetical protein
3746	 75.06	+1	3913743..3914171	-	142	162149592	arsR	GDI3831	-	putative transcriptional regulator ArsR
3747	 72.91	+1	3914168..3914776	-	202	162149593	-	GDI3832	-	putative peroxiredoxin protein
3748	 70.72	0	3914972..3915934	+	320	162149594	-	GDI3833	-	hypothetical protein
3749	 72.92	+1	3915945..3916760	+	271	162149595	-	GDI3834	-	hypothetical protein
3750	 66.67	0	3916860..3917120	+	86	162149596	-	GDI3835	-	hypothetical protein
3751	 67.30	0	3917177..3917653	-	158	162149597	-	GDI3836	-	hypothetical protein
3752	 74.68	+1	3917775..3918473	-	232	162149598	-	GDI3837	-	hypothetical protein
3753	 71.21	0	3918475..3919905	-	476	162149599	-	GDI3838	-	putative erythromycin esterase protein
3754	 76.42	+1	3920086..3921069	+	327	162149600	-	GDI3839	-	HlyD family secretion protein
3755	 68.31	0	3921066..3921674	+	202	162149601	-	GDI3840	-	putative ABC transporter component
3756	 76.63	+1	3921671..3923155	+	494	162149602	ttgF	GDI3841	-	putative outer membrane efflux protein
3757	 69.93	0	3923166..3924791	-	541	162149603	-	GDI3842	-	GGDEF family signaling protein
3758	 40.43	-2	3924950..3925090	-	46	162149604	-	GDI3843	-	hypothetical protein
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.