IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3581	 68.73	0	3740439..3742517	+	692	162149427	-	GDI3665	-	GGDEF family signaling protein
3582	 58.12	-1	3742681..3743838	-	385	162149428	-	GDI3666	-	hypothetical protein
3583	 60.77	0	3743923..3744363	-	146	162149429	-	GDI3667	-	hypothetical protein
3584	 71.15	0	3744582..3745049	+	155	162149430	-	GDI3668	-	hypothetical protein
3585	 68.67	0	3745075..3746568	+	497	162149431	-	GDI3669	-	hypothetical protein
3586	 69.27	0	3746779..3749502	+	907	162149432	-	GDI3670	-	hypothetical protein
3587	 73.61	+1	3749499..3750896	+	465	162149433	-	GDI3671	-	hypothetical protein
3588	 68.10	0	3751021..3751647	+	208	162149434	-	GDI3672	-	hypothetical protein
3589	 63.70	0	3751660..3752568	+	302	162149435	-	GDI3673	-	hypothetical protein
3590	 66.23	0	3752633..3752860	+	75	162149436	-	GDI3674	-	hypothetical protein
3591	 67.87	0	3752925..3753341	+	138	162149437	-	GDI3675	-	hypothetical protein
3592	 71.43	0	3753325..3753828	+	167	162149438	-	GDI3676	-	hypothetical protein
3593	 71.70	0	3753825..3755711	+	628	162149439	-	GDI3677	-	hypothetical protein
3594	 67.96	0	3755718..3759350	+	1210	162149440	-	GDI3678	-	hypothetical protein
3595	 76.42	+1	3759350..3759985	+	211	162149441	-	GDI3679	-	hypothetical protein
3596	 73.86	+1	3759985..3760443	+	152	162149442	-	GDI3680	-	hypothetical protein
3597	 69.33	0	3760428..3761441	+	337	162149443	-	GDI3681	-	hypothetical protein
3598	 55.58	-1	3761548..3763080	+	510	162149444	-	GDI3682	-	hypothetical protein
3599	 67.76	0	3763121..3763576	+	151	162149445	-	GDI3683	-	hypothetical protein
3600	 68.76	0	3763573..3764049	+	158	162149446	-	GDI3684	-	hypothetical protein
3601	 67.22	0	3764034..3764762	+	242	162149447	-	GDI3685	-	hypothetical protein
3602	 72.53	+1	3764811..3765560	-	249	162149448	-	GDI3686	-	hypothetical protein
3603	 70.87	0	3765858..3766214	+	118	162149449	-	GDI3687	-	hypothetical protein
3604	 72.53	+1	3766215..3766760	+	181	162149450	-	GDI3688	-	hypothetical protein
3605	 66.03	0	3766757..3767230	+	157	162149451	-	GDI3689	-	hypothetical protein
3606	 68.55	0	3767341..3767712	+	123	162149452	-	GDI3690	-	hypothetical protein
3607	 68.90	0	3767770..3768798	+	342	162149453	-	GDI3691	-	hypothetical protein
3608	 72.81	+1	3768961..3769725	+	254	162149454	-	GDI3692	-	hypothetical protein
3609	 69.40	0	3769664..3770506	-	280	162149455	-	GDI3693	-	hypothetical protein
3610	 61.15	0	3770718..3771206	+	162	162149456	-	GDI3694	-	bacterioferritin
3611	 73.04	+1	3771239..3771913	+	224	162149457	-	GDI3695	-	hypothetical protein
3612	 61.88	0	3771910..3772473	+	187	162149458	-	GDI3696	-	hypothetical protein
3613	 69.59	0	3772443..3773195	+	250	162149459	-	GDI3697	-	hypothetical protein
3614	 68.06	0	3773275..3774564	-	429	162149460	-	GDI3698	-	putative ATP-dependent RNA helicase
3615	 56.65	-1	3774781..3775788	-	335	162149461	-	GDI3699	-	putative transposase
3616	 51.04	-2	3775860..3777158	-	432	162149462	-	GDI3700	-	hypothetical protein
3617	 61.78	0	3777309..3778106	-	265	162149463	-	GDI3701	-	transposase
3618	 57.32	-1	3778153..3778965	-	270	162149464	-	GDI3702	-	hypothetical protein
3619	 53.00	-2	3778962..3779612	-	216	162149465	-	GDI3703	-	hypothetical protein
3620	 56.80	-1	3779706..3780698	+	330	162149466	-	GDI3704	-	transposase
3621	 54.72	-1	3780850..3781008	+	52	162149467	-	GDI3705	-	hypothetical protein
3622	 66.94	0	3781009..3782121	-	370	162149468	-	GDI3706	-	putative phosphoesterase
3623	 69.68	0	3782214..3785138	-	974	162149469	-	GDI3707	-	GGDEF family signaling protein
3624	 71.50	0	3785153..3786310	-	385	162149470	-	GDI3708	-	hypothetical protein
3625	 60.10	-1	3786386..3787222	+	278	162149471	-	GDI3709	-	putative transposase
3626	 77.57	+1	3787516..3787836	-	106	162149472	-	GDI3710	-	hypothetical protein
3627	 73.93	+1	3787812..3789242	-	476	162149473	-	GDI3711	-	hypothetical protein
3628	 78.75	+2	3789263..3789535	-	90	162149474	-	GDI3712	-	hypothetical protein
3629	 67.00	0	3789543..3791936	-	797	162149475	-	GDI3713	-	putative TonB-dependent receptor
3630	 54.47	-2	3792236..3792358	+	40	162149476	-	GDI3714	-	hypothetical protein
3631	 65.69	0	3792478..3795135	+	885	162149477	-	GDI3715	-	TonB-dependent receptor
3632	 74.43	+1	3795332..3795550	+	72	162149478	-	GDI3716	-	hypothetical protein
3633	 69.60	0	3795556..3795930	-	124	162149479	-	GDI3717	-	hypothetical protein
3634	 66.36	0	3796205..3798490	-	761	162149480	-	GDI3718	-	putative tonB-dependent receptor protein
3635	 73.63	+1	3798792..3800270	-	492	162149481	-	GDI3719	-	putative outer membrane protein
3636	 70.39	0	3800272..3802713	-	813	162149482	-	GDI3720	-	putative transmembrane transport protein
3637	 70.70	0	3802750..3805155	-	801	162149483	-	GDI3721	-	putative transmembrane transport protein
3638	 65.79	0	3805203..3805889	-	228	162149484	-	GDI3722	-	putative ABC transport system, ATP-binding protein
3639	 69.28	0	3805898..3807352	-	484	162149485	-	GDI3723	-	HlyD family secretion protein
3640	 76.58	+1	3807351..3808691	+	446	162149486	-	GDI3724	-	putative two-component system, response regulator
3641	 75.75	+1	3808699..3809964	+	421	162149487	-	GDI3725	-	two-component system, sensor histidine kinase
3642	 68.64	0	3810123..3811691	+	522	162149488	-	GDI3726	-	putative transport ATP-binding protein
3643	 56.60	-1	3811935..3812927	-	330	162149489	-	GDI3727	-	putative integrase
3644	 68.06	0	3812956..3813744	+	262	162149490	-	GDI3728	-	putative transport system permease protein
3645	 69.45	0	3813744..3814748	+	334	162149491	-	GDI3729	-	putative transport system permease protein
3646	 63.59	0	3814808..3815815	+	335	162149492	-	GDI3730	-	hypothetical protein
3647	 59.62	-1	3815851..3816162	+	103	162149493	-	GDI3731	-	putative antibiotic biosynthesis monooxygenase
3648	 68.78	0	3816235..3817230	+	331	162149494	-	GDI3732	-	putative oxidoreductase
3649	 59.28	-1	3817238..3817819	+	193	162149495	-	GDI3733	-	hypothetical protein
3650	 64.01	0	3817863..3818651	-	262	162149496	-	GDI3734	-	short-chain dehydrogenases/reductase family protein
3651	 69.41	0	3818836..3819894	+	352	162149497	lacI	GDI3735	-	LacI family transcriptional regulator
3652	 67.08	0	3819986..3821677	+	563	162149498	-	GDI3736	-	putative invertase
3653	 43.40	-2	3821990..3822148	+	52	162149499	-	GDI3737	-	hypothetical protein
3654	 25.00	-2	3822138..3822233	+	31	162149500	-	GDI3738	-	hypothetical protein
3655	 29.09	-2	3822313..3822972	+	219	162149501	-	GDI3739	-	hypothetical protein
3656	 57.14	-1	3823087..3823149	+	20	162149502	-	GDI3740	-	hypothetical protein
3657	 70.09	0	3823220..3824623	+	467	162149503	-	GDI3741	-	putative aminotransferase
3658	 59.83	-1	3824873..3825355	+	160	162149504	-	GDI3742	-	hypothetical protein
3659	 68.02	0	3825461..3826420	+	319	162149505	nitA	GDI3743	-	putative nitrilase
3660	 70.70	0	3826417..3827532	+	371	162149506	-	GDI3744	-	hypothetical protein
3661	 69.98	0	3827547..3828119	+	190	162149507	-	GDI3745	-	hypothetical protein
3662	 73.76	+1	3828119..3829105	+	328	162149508	hypE	GDI3746	-	hypothetical protein
3663	 74.66	+1	3829102..3830277	+	391	162149509	-	GDI3747	-	putative glycosiltransferase
3664	 67.00	0	3830279..3830575	+	98	162149510	-	GDI3748	-	hypothetical protein
3665	 66.59	0	3830572..3831819	+	415	162149511	-	GDI3749	-	hypothetical protein
3666	 71.72	0	3831835..3833595	+	586	162149512	-	GDI3750	-	putative propionate--CoA ligase
3667	 71.34	0	3833842..3834612	+	256	162149513	-	GDI3751	-	putative glyoxalase/Bleomycin resistance protein/dioxygenase
3668	 69.35	0	3835117..3836346	-	409	162149514	-	GDI3752	-	putative sugar isomerase
3669	 68.06	0	3836363..3837223	-	286	162149515	-	GDI3753	-	putative glucose and ribitol dehydrogenase
3670	 60.76	0	3837336..3837572	-	78	162149516	-	GDI3754	-	hypothetical protein
3671	 64.66	0	3837673..3837921	-	82	162149517	-	GDI3755	-	hypothetical protein
3672	 73.75	+1	3838063..3838824	+	253	162149518	-	GDI3756	-	hypothetical protein
3673	 69.66	0	3838775..3839878	-	367	162149519	-	GDI3757	-	putative glycerophosphoryl diester phosphodiesterase
3674	 64.58	0	3839916..3842360	-	814	162149520	-	GDI3758	-	putative tonB-dependent receptor
3675	 71.17	0	3842650..3843138	+	162	162149521	marR	GDI3759	-	putative transcriptional regulator marR
3676	 72.96	+1	3843135..3845360	+	741	162149522	-	GDI3760	-	hypothetical protein
3677	 67.65	0	3845578..3846489	+	303	162149523	-	GDI3761	-	HlyD family secretion protein
3678	 70.31	0	3846681..3848216	+	511	162149524	oprM	GDI3762	-	putative Outer membrane protein oprM
3679	 69.14	0	3848409..3849782	-	457	162149525	clcB	GDI3763	-	putative chloride channel protein
3680	 70.08	0	3850114..3851520	+	468	162149526	-	GDI3764	-	putative L-sorbosone dehydrogenase
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.