IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3525	 64.84	0	3687352..3689598	+	748	162149371	-	GDI3605	-	hypothetical protein
3526	 69.65	0	3690126..3691565	-	479	162149372	-	GDI3606	-	hypothetical protein
3527	 65.15	0	3691716..3691781	-	21	162149373	-	GDI3607	-	hypothetical protein
3528	 68.06	0	3692164..3693381	+	405	162149374	-	GDI3608	-	hypothetical protein
3529	 61.47	0	3693360..3693782	-	140	162149375	-	GDI3609	-	hypothetical protein
3530	 62.96	0	3693772..3693987	+	71	162149376	-	GDI3610	-	hypothetical protein
3531	 63.41	0	3694142..3694510	-	122	162149377	-	GDI3611	-	hypothetical protein
3532	 62.30	0	3694507..3694758	-	83	162149378	-	GDI3612	-	putative plasmid stabilisation system protein
3533	 67.20	0	3694948..3695514	+	188	162149379	-	GDI3613	-	putative resolvase
3534	 71.65	0	3696024..3696725	+	233	162149380	rlmB	GDI3614	-	putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
3535	 68.92	0	3696807..3697250	+	147	162149381	-	GDI3615	-	hypothetical protein
3536	 71.17	0	3697275..3697718	+	147	162149382	-	GDI3616	-	hypothetical protein
3537	 73.50	+1	3697737..3699257	-	506	162149383	-	GDI3617	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A
3538	 69.05	0	3699335..3700216	-	293	162149384	-	GDI3618	-	hypothetical protein
3539	 58.92	-1	3700470..3700766	-	98	162149385	-	GDI3619	-	hypothetical protein
3540	 63.33	0	3700873..3701622	-	249	162149386	-	GDI3620	-	putative oxidoreductase protein
3541	 66.03	0	3701619..3702242	-	207	162149387	-	GDI3621	-	hypothetical protein
3542	 71.40	0	3702395..3702859	+	154	162149388	msrB	GDI3622	-	putative peptide methionine sulfoxide reductase msrB
3543	 65.96	0	3703038..3703742	+	234	162149389	msrA	GDI3623	-	putative peptide methionine sulfoxide reductase
3544	 60.90	0	3705543..3706964	-	473	162149390	pcaB	GDI3627	-	putative 3-carboxy-cis,cis-muconate cycloisomerase
3545	 62.52	0	3707265..3707963	+	232	162149391	-	GDI3628	-	putative transposase
3546	 64.29	0	3708112..3708489	+	125	162149392	-	GDI3629	-	putative transposase
3547	 66.21	0	3709070..3709945	-	291	162149393	-	GDI3631	-	putative transcriptional regulator LysR
3548	 69.17	0	3709960..3711159	-	399	162149394	-	GDI3632	-	putative amidohydrolase
3549	 60.59	0	3711240..3713624	-	794	162149395	tonB	GDI3633	-	putative TonB-dependent receptor
3550	 73.21	+1	3713950..3715431	+	493	162149396	-	GDI3634	-	hypothetical protein
3551	 71.71	0	3715506..3717191	+	561	162149397	-	GDI3635	-	putative sulfate trasporter
3552	 67.77	0	3717195..3718010	+	271	162149398	-	GDI3636	-	hypothetical protein
3553	 67.62	0	3718015..3718539	-	174	162149399	-	GDI3637	-	hypothetical protein
3554	 65.49	0	3718637..3719062	+	141	162149400	-	GDI3638	-	hypothetical protein
3555	 69.32	0	3719108..3719710	+	200	162149401	-	GDI3639	-	putative acetyltransferase
3556	 68.39	0	3719753..3721147	+	464	162149402	-	GDI3640	-	GGDEF family signaling protein
3557	 64.49	0	3721262..3721399	+	45	162149403	-	GDI3641	-	hypothetical protein
3558	 68.58	0	3721658..3722179	-	173	162149404	-	GDI3642	-	putative acetyltransferase
3559	 64.48	0	3722360..3723868	+	502	162149405	oprB	GDI3643	-	putative carbohydrate-selective porin
3560	 66.07	0	3723872..3725035	+	387	162149406	-	GDI3644	-	hypothetical protein
3561	 67.89	0	3725032..3726255	+	407	162149407	-	GDI3645	-	hypothetical protein
3562	 72.64	+1	3726258..3726458	+	66	162149408	-	GDI3646	-	hypothetical protein
3563	 69.46	0	3726471..3727007	-	178	162149409	-	GDI3647	-	hypothetical protein
3564	 72.77	+1	3727117..3727509	+	130	162149410	arsR	GDI3648	-	ArsR family transcriptional regulator
3565	 69.67	0	3727513..3727878	+	121	162149411	arsC	GDI3649	-	putative arsenate reductase
3566	 69.66	0	3727878..3729182	+	434	162149412	arsB	GDI3650	-	arsenical pump membrane protein
3567	 71.15	0	3729251..3729808	+	185	162149413	-	GDI3651	-	putative cytochrome B561
3568	 68.16	0	3729834..3730034	+	66	162149414	-	GDI3652	-	putative lipoprotein
3569	 63.15	0	3730062..3730829	-	255	162149415	-	GDI3653	-	putative hydrolase protein
3570	 76.67	+1	3730936..3732165	-	409	162149416	-	GDI3654	-	hypothetical protein
3571	 73.22	+1	3732167..3733525	-	452	162149417	-	GDI3655	-	hypothetical protein
3572	 74.23	+1	3733643..3734065	-	140	162149418	-	GDI3656	-	hypothetical protein
3573	 68.48	0	3734102..3734266	-	54	162149419	-	GDI3657	-	hypothetical protein
3574	 67.97	0	3734358..3735122	-	254	162149420	-	GDI3658	-	putative protease
3575	 68.85	0	3735137..3735457	+	106	162149421	-	GDI3659	-	hypothetical protein
3576	 69.93	0	3735454..3735729	+	91	162149422	-	GDI3660	-	hypothetical protein
3577	 74.40	+1	3735716..3738250	+	844	162149423	-	GDI3661	-	hypothetical protein
3578	 66.99	0	3738262..3738573	+	103	162149424	-	GDI3662	-	hypothetical protein
3579	 69.60	0	3738582..3739400	+	272	162149425	-	GDI3663	-	hypothetical protein
3580	 56.79	-1	3739416..3740417	+	333	162149426	-	GDI3664	-	putative integrase protein
3581	 68.73	0	3740439..3742517	+	692	162149427	-	GDI3665	-	GGDEF family signaling protein
3582	 58.12	-1	3742681..3743838	-	385	162149428	-	GDI3666	-	hypothetical protein
3583	 60.77	0	3743923..3744363	-	146	162149429	-	GDI3667	-	hypothetical protein
3584	 71.15	0	3744582..3745049	+	155	162149430	-	GDI3668	-	hypothetical protein
3585	 68.67	0	3745075..3746568	+	497	162149431	-	GDI3669	-	hypothetical protein
3586	 69.27	0	3746779..3749502	+	907	162149432	-	GDI3670	-	hypothetical protein
3587	 73.61	+1	3749499..3750896	+	465	162149433	-	GDI3671	-	hypothetical protein
3588	 68.10	0	3751021..3751647	+	208	162149434	-	GDI3672	-	hypothetical protein
3589	 63.70	0	3751660..3752568	+	302	162149435	-	GDI3673	-	hypothetical protein
3590	 66.23	0	3752633..3752860	+	75	162149436	-	GDI3674	-	hypothetical protein
3591	 67.87	0	3752925..3753341	+	138	162149437	-	GDI3675	-	hypothetical protein
3592	 71.43	0	3753325..3753828	+	167	162149438	-	GDI3676	-	hypothetical protein
3593	 71.70	0	3753825..3755711	+	628	162149439	-	GDI3677	-	hypothetical protein
3594	 67.96	0	3755718..3759350	+	1210	162149440	-	GDI3678	-	hypothetical protein
3595	 76.42	+1	3759350..3759985	+	211	162149441	-	GDI3679	-	hypothetical protein
3596	 73.86	+1	3759985..3760443	+	152	162149442	-	GDI3680	-	hypothetical protein
3597	 69.33	0	3760428..3761441	+	337	162149443	-	GDI3681	-	hypothetical protein
3598	 55.58	-1	3761548..3763080	+	510	162149444	-	GDI3682	-	hypothetical protein
3599	 67.76	0	3763121..3763576	+	151	162149445	-	GDI3683	-	hypothetical protein
3600	 68.76	0	3763573..3764049	+	158	162149446	-	GDI3684	-	hypothetical protein
3601	 67.22	0	3764034..3764762	+	242	162149447	-	GDI3685	-	hypothetical protein
3602	 72.53	+1	3764811..3765560	-	249	162149448	-	GDI3686	-	hypothetical protein
3603	 70.87	0	3765858..3766214	+	118	162149449	-	GDI3687	-	hypothetical protein
3604	 72.53	+1	3766215..3766760	+	181	162149450	-	GDI3688	-	hypothetical protein
3605	 66.03	0	3766757..3767230	+	157	162149451	-	GDI3689	-	hypothetical protein
3606	 68.55	0	3767341..3767712	+	123	162149452	-	GDI3690	-	hypothetical protein
3607	 68.90	0	3767770..3768798	+	342	162149453	-	GDI3691	-	hypothetical protein
3608	 72.81	+1	3768961..3769725	+	254	162149454	-	GDI3692	-	hypothetical protein
3609	 69.40	0	3769664..3770506	-	280	162149455	-	GDI3693	-	hypothetical protein
3610	 61.15	0	3770718..3771206	+	162	162149456	-	GDI3694	-	bacterioferritin
3611	 73.04	+1	3771239..3771913	+	224	162149457	-	GDI3695	-	hypothetical protein
3612	 61.88	0	3771910..3772473	+	187	162149458	-	GDI3696	-	hypothetical protein
3613	 69.59	0	3772443..3773195	+	250	162149459	-	GDI3697	-	hypothetical protein
3614	 68.06	0	3773275..3774564	-	429	162149460	-	GDI3698	-	putative ATP-dependent RNA helicase
3615	 56.65	-1	3774781..3775788	-	335	162149461	-	GDI3699	-	putative transposase
3616	 51.04	-2	3775860..3777158	-	432	162149462	-	GDI3700	-	hypothetical protein
3617	 61.78	0	3777309..3778106	-	265	162149463	-	GDI3701	-	transposase
3618	 57.32	-1	3778153..3778965	-	270	162149464	-	GDI3702	-	hypothetical protein
3619	 53.00	-2	3778962..3779612	-	216	162149465	-	GDI3703	-	hypothetical protein
3620	 56.80	-1	3779706..3780698	+	330	162149466	-	GDI3704	-	transposase
3621	 54.72	-1	3780850..3781008	+	52	162149467	-	GDI3705	-	hypothetical protein
3622	 66.94	0	3781009..3782121	-	370	162149468	-	GDI3706	-	putative phosphoesterase
3623	 69.68	0	3782214..3785138	-	974	162149469	-	GDI3707	-	GGDEF family signaling protein
3624	 71.50	0	3785153..3786310	-	385	162149470	-	GDI3708	-	hypothetical protein
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.