IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3458	 66.99	0	3639593..3640204	-	203	162149304	-	GDI3536	-	electron transport protein SCO1/SenC
3459	 69.99	0	3640204..3643035	-	943	162149305	polA	GDI3537	-	putative DNA polymerase I
3460	 68.35	0	3643045..3643281	-	78	162149306	-	GDI3538	-	hypothetical protein
3461	 76.41	+1	3643403..3644449	+	348	162149307	-	GDI3539	-	putative alpha/beta hydrolase
3462	 60.48	0	3644619..3644828	-	69	162149308	-	GDI3540	-	hypothetical protein
3463	 58.17	-1	3644905..3645210	-	101	162149309	-	GDI3541	-	hypothetical protein
3464	 64.40	0	3645312..3645620	+	102	162149310	-	GDI3542	-	hypothetical protein
3465	 68.75	0	3645648..3645887	-	79	162149311	-	GDI3543	-	hypothetical protein
3466	 74.72	+1	3645981..3646700	-	239	162149312	-	GDI3544	-	hypothetical protein
3467	 61.59	0	3646715..3646852	-	45	162149313	-	GDI3545	-	hypothetical protein
3468	 62.57	0	3646870..3647040	-	56	162149314	-	GDI3546	-	hypothetical protein
3469	 71.88	0	3647188..3647379	+	63	162149315	-	GDI3547	-	hypothetical protein
3470	 71.26	0	3647432..3647605	-	57	162149316	-	GDI3548	-	hypothetical protein
3471	 68.26	0	3647658..3648785	-	375	162149317	-	GDI3549	-	hypothetical protein
3472	 60.34	-1	3648982..3649518	+	178	162149318	-	GDI3550	-	hypothetical protein
3473	 66.36	0	3649575..3649898	+	107	162149319	-	GDI3551	-	hypothetical protein
3474	 69.78	0	3650184..3650954	-	256	162149320	-	GDI3552	-	hypothetical protein
3475	 69.77	0	3650951..3651337	-	128	162149321	-	GDI3553	-	hypothetical protein
3476	 52.87	-2	3651475..3651648	-	57	162149322	-	GDI3554	-	hypothetical protein
3477	 68.08	0	3651760..3652326	-	188	162149323	-	GDI3555	-	hypothetical protein
3478	 68.32	0	3652406..3652948	-	180	162149324	-	GDI3556	-	hypothetical protein
3479	 70.41	0	3653003..3653296	-	97	162149325	-	GDI3557	-	hypothetical protein
3480	 71.51	0	3653375..3653746	-	123	162149326	-	GDI3558	-	hypothetical protein
3481	 69.31	0	3653743..3654234	-	163	162149327	-	GDI3559	-	hypothetical protein
3482	 65.96	0	3654231..3654512	-	93	162149328	-	GDI3560	-	hypothetical protein
3483	 65.73	0	3654558..3656489	-	643	162149329	-	GDI3561	-	hypothetical protein
3484	 70.50	0	3656486..3657502	-	338	162149330	-	GDI3562	-	hypothetical protein
3485	 64.51	0	3657513..3658160	-	215	162149331	gp48	GDI3563	-	putative bacteriophage related protein
3486	 61.30	0	3658164..3659636	-	490	162149332	-	GDI3564	-	putative integrase protein
3487	 66.12	0	3659637..3660365	-	242	162149333	gp47	GDI3565	-	putative bacteriophage related protein
3488	 68.06	0	3660366..3660866	-	166	162149334	gp46	GDI3566	-	putative bacteriophage related protein
3489	 68.62	0	3660878..3661390	-	170	162149335	gp45	GDI3567	-	putative bacteriophage related protein
3490	 64.26	0	3661387..3662589	-	400	162149336	-	GDI3568	-	putative bacteriophage related protein
3491	 70.57	0	3662652..3663959	-	435	162149337	-	GDI3569	-	hypothetical protein
3492	 57.06	-1	3664121..3664297	+	58	162149338	-	GDI3570	-	hypothetical protein
3493	 65.87	0	3664329..3664580	+	83	162149339	-	GDI3571	-	hypothetical protein
3494	 64.72	0	3664600..3665010	-	136	162149340	-	GDI3572	-	hypothetical protein
3495	 59.15	-1	3666724..3667362	+	212	162149341	-	GDI3574	-	transposase
3496	 66.67	0	3667452..3668516	+	354	162149342	-	GDI3575	-	hypothetical protein
3497	 55.14	-1	3668513..3668989	+	158	162149343	-	GDI3576	-	hypothetical protein
3498	 66.37	0	3668980..3669648	+	222	162149344	-	GDI3577	-	hypothetical protein
3499	 63.60	0	3669656..3669883	+	75	162149345	-	GDI3578	-	hypothetical protein
3500	 64.90	0	3671285..3672640	-	451	162149346	-	GDI3580	-	putative phage integrase
3501	 66.99	0	3672861..3674090	+	409	162149347	-	GDI3581	-	putative phage integrase
3502	 62.50	0	3674190..3674621	+	143	162149348	-	GDI3582	-	hypothetical protein
3503	 66.67	0	3674664..3675683	+	339	162149349	-	GDI3583	-	hypothetical protein
3504	 43.06	-2	3675776..3675919	-	47	162149350	-	GDI3584	-	hypothetical protein
3505	 45.71	-2	3676053..3676157	-	34	162149351	-	GDI3585	-	hypothetical protein
3506	 57.02	-1	3676167..3676892	+	241	162149352	-	GDI3586	-	hypothetical protein
3507	 56.64	-1	3676818..3677246	-	142	162149353	-	GDI3587	-	hypothetical protein
3508	 37.41	-2	3677714..3677983	-	89	162149354	-	GDI3588	-	hypothetical protein
3509	 58.73	-1	3677980..3678231	-	83	162149355	-	GDI3589	-	hypothetical protein
3510	 66.15	0	3678362..3678553	+	63	162149356	-	GDI3590	-	hypothetical protein
3511	 65.35	0	3678550..3678777	+	75	162149357	-	GDI3591	-	hypothetical protein
3512	 65.26	0	3678765..3679049	+	94	162149358	-	GDI3592	-	hypothetical protein
3513	 65.67	0	3679039..3679440	+	133	162149359	-	GDI3593	-	hypothetical protein
3514	 66.17	0	3679440..3679640	+	66	162149360	-	GDI3594	-	hypothetical protein
3515	 62.04	0	3679637..3679852	+	71	162149361	-	GDI3595	-	hypothetical protein
3516	 57.59	-1	3679989..3680594	-	201	162149362	-	GDI3596	-	hypothetical protein
3517	 65.31	0	3680622..3681209	-	195	162149363	-	GDI3597	-	hypothetical protein
3518	 60.46	0	3681185..3682054	+	289	162149364	-	GDI3598	-	hypothetical protein
3519	 67.94	0	3682051..3682365	+	104	162149365	-	GDI3599	-	hypothetical protein
3520	 64.97	0	3682362..3684890	+	842	162149366	-	GDI3600	-	hypothetical protein
3521	 67.58	0	3685170..3685829	+	219	162149367	-	GDI3601	-	hypothetical protein
3522	 64.29	0	3685826..3686623	+	265	162149368	-	GDI3602	-	hypothetical protein
3523	 49.32	-2	3686684..3686977	+	97	162149369	-	GDI3603	-	hypothetical protein
3524	 55.42	-1	3687116..3687355	+	79	162149370	-	GDI3604	-	hypothetical protein
3525	 64.84	0	3687352..3689598	+	748	162149371	-	GDI3605	-	hypothetical protein
3526	 69.65	0	3690126..3691565	-	479	162149372	-	GDI3606	-	hypothetical protein
3527	 65.15	0	3691716..3691781	-	21	162149373	-	GDI3607	-	hypothetical protein
3528	 68.06	0	3692164..3693381	+	405	162149374	-	GDI3608	-	hypothetical protein
3529	 61.47	0	3693360..3693782	-	140	162149375	-	GDI3609	-	hypothetical protein
3530	 62.96	0	3693772..3693987	+	71	162149376	-	GDI3610	-	hypothetical protein
3531	 63.41	0	3694142..3694510	-	122	162149377	-	GDI3611	-	hypothetical protein
3532	 62.30	0	3694507..3694758	-	83	162149378	-	GDI3612	-	putative plasmid stabilisation system protein
3533	 67.20	0	3694948..3695514	+	188	162149379	-	GDI3613	-	putative resolvase
3534	 71.65	0	3696024..3696725	+	233	162149380	rlmB	GDI3614	-	putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
3535	 68.92	0	3696807..3697250	+	147	162149381	-	GDI3615	-	hypothetical protein
3536	 71.17	0	3697275..3697718	+	147	162149382	-	GDI3616	-	hypothetical protein
3537	 73.50	+1	3697737..3699257	-	506	162149383	-	GDI3617	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A
3538	 69.05	0	3699335..3700216	-	293	162149384	-	GDI3618	-	hypothetical protein
3539	 58.92	-1	3700470..3700766	-	98	162149385	-	GDI3619	-	hypothetical protein
3540	 63.33	0	3700873..3701622	-	249	162149386	-	GDI3620	-	putative oxidoreductase protein
3541	 66.03	0	3701619..3702242	-	207	162149387	-	GDI3621	-	hypothetical protein
3542	 71.40	0	3702395..3702859	+	154	162149388	msrB	GDI3622	-	putative peptide methionine sulfoxide reductase msrB
3543	 65.96	0	3703038..3703742	+	234	162149389	msrA	GDI3623	-	putative peptide methionine sulfoxide reductase
3544	 60.90	0	3705543..3706964	-	473	162149390	pcaB	GDI3627	-	putative 3-carboxy-cis,cis-muconate cycloisomerase
3545	 62.52	0	3707265..3707963	+	232	162149391	-	GDI3628	-	putative transposase
3546	 64.29	0	3708112..3708489	+	125	162149392	-	GDI3629	-	putative transposase
3547	 66.21	0	3709070..3709945	-	291	162149393	-	GDI3631	-	putative transcriptional regulator LysR
3548	 69.17	0	3709960..3711159	-	399	162149394	-	GDI3632	-	putative amidohydrolase
3549	 60.59	0	3711240..3713624	-	794	162149395	tonB	GDI3633	-	putative TonB-dependent receptor
3550	 73.21	+1	3713950..3715431	+	493	162149396	-	GDI3634	-	hypothetical protein
3551	 71.71	0	3715506..3717191	+	561	162149397	-	GDI3635	-	putative sulfate trasporter
3552	 67.77	0	3717195..3718010	+	271	162149398	-	GDI3636	-	hypothetical protein
3553	 67.62	0	3718015..3718539	-	174	162149399	-	GDI3637	-	hypothetical protein
3554	 65.49	0	3718637..3719062	+	141	162149400	-	GDI3638	-	hypothetical protein
3555	 69.32	0	3719108..3719710	+	200	162149401	-	GDI3639	-	putative acetyltransferase
3556	 68.39	0	3719753..3721147	+	464	162149402	-	GDI3640	-	GGDEF family signaling protein
3557	 64.49	0	3721262..3721399	+	45	162149403	-	GDI3641	-	hypothetical protein
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.