IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3432	 65.48	0	3612847..3613350	+	167	162149278	-	GDI3510	-	hypothetical protein
3433	 67.19	0	3613380..3614138	-	252	162149279	-	GDI3511	-	hypothetical protein
3434	 69.11	0	3614339..3615076	+	245	162149280	lepB	GDI3512	-	putative signal peptidase I
3435	 65.96	0	3615077..3615646	-	189	162149281	-	GDI3513	-	hypothetical protein
3436	 64.36	0	3615809..3617326	+	505	162149282	oprB	GDI3514	-	putative carbohydrate-selective porin
3437	 71.43	0	3617373..3618149	-	258	162149283	ompH	GDI3515	-	putative outer membrane protien
3438	 74.84	+1	3618273..3618749	+	158	162149284	-	GDI3516	-	hypothetical protein
3439	 68.24	0	3618861..3619370	-	169	162149285	-	GDI3517	-	hypothetical protein
3440	 74.75	+1	3619491..3619886	-	131	162149286	-	GDI3518	-	hypothetical protein
3441	 73.88	+1	3619900..3621480	-	526	162149287	xseA	GDI3519	-	putative exodeoxyribonuclease VII large subunit
3442	 74.74	+1	3621484..3622722	+	412	162149288	garS	GDI3520	-	phosphoribosylamine--glycine ligase
3443	 64.50	0	3623017..3623523	+	168	162149289	-	GDI3521	-	hypothetical protein
3444	 69.84	0	3623592..3623780	+	62	162149290	-	GDI3522	-	hypothetical protein
3445	 63.68	0	3623806..3624975	-	389	162149291	-	GDI3523	-	putative zinc-type alcohol dehydrogenase-like protein
3446	 69.68	0	3624972..3626099	-	375	162149292	-	GDI3524	-	putative short chain dehydrogenase
3447	 70.59	0	3626143..3626550	-	135	162149293	-	GDI3525	-	hypothetical protein
3448	 68.80	0	3626614..3627552	-	312	162149294	-	GDI3526	-	hypothetical protein
3449	 67.56	0	3627576..3629030	-	484	162149295	-	GDI3527	-	hypothetical protein
3450	 62.01	0	3629027..3630895	-	622	162149296	-	GDI3528	-	putative glycosyltransferase
3451	 64.29	0	3630915..3631757	-	280	162149297	-	GDI3529	-	hypothetical protein
3452	 69.05	0	3631780..3633711	-	643	162149298	-	GDI3530	-	hypothetical protein
3453	 73.66	+1	3633932..3634903	-	323	162149299	oppF	GDI3531	-	putative peptide ABC transport protein
3454	 74.10	+1	3634900..3635895	-	331	162149300	oppD	GDI3532	-	putative peptide ABC transport protein
3455	 69.52	0	3635915..3636895	-	326	162149301	-	GDI3533	-	putative transport/binding protein
3456	 71.40	0	3636892..3637905	-	337	162149302	-	GDI3534	-	putative transport/binding protein
3457	 68.44	0	3637902..3639593	-	563	162149303	-	GDI3535	-	putative peptide bind protein
3458	 66.99	0	3639593..3640204	-	203	162149304	-	GDI3536	-	electron transport protein SCO1/SenC
3459	 69.99	0	3640204..3643035	-	943	162149305	polA	GDI3537	-	putative DNA polymerase I
3460	 68.35	0	3643045..3643281	-	78	162149306	-	GDI3538	-	hypothetical protein
3461	 76.41	+1	3643403..3644449	+	348	162149307	-	GDI3539	-	putative alpha/beta hydrolase
3462	 60.48	0	3644619..3644828	-	69	162149308	-	GDI3540	-	hypothetical protein
3463	 58.17	-1	3644905..3645210	-	101	162149309	-	GDI3541	-	hypothetical protein
3464	 64.40	0	3645312..3645620	+	102	162149310	-	GDI3542	-	hypothetical protein
3465	 68.75	0	3645648..3645887	-	79	162149311	-	GDI3543	-	hypothetical protein
3466	 74.72	+1	3645981..3646700	-	239	162149312	-	GDI3544	-	hypothetical protein
3467	 61.59	0	3646715..3646852	-	45	162149313	-	GDI3545	-	hypothetical protein
3468	 62.57	0	3646870..3647040	-	56	162149314	-	GDI3546	-	hypothetical protein
3469	 71.88	0	3647188..3647379	+	63	162149315	-	GDI3547	-	hypothetical protein
3470	 71.26	0	3647432..3647605	-	57	162149316	-	GDI3548	-	hypothetical protein
3471	 68.26	0	3647658..3648785	-	375	162149317	-	GDI3549	-	hypothetical protein
3472	 60.34	-1	3648982..3649518	+	178	162149318	-	GDI3550	-	hypothetical protein
3473	 66.36	0	3649575..3649898	+	107	162149319	-	GDI3551	-	hypothetical protein
3474	 69.78	0	3650184..3650954	-	256	162149320	-	GDI3552	-	hypothetical protein
3475	 69.77	0	3650951..3651337	-	128	162149321	-	GDI3553	-	hypothetical protein
3476	 52.87	-2	3651475..3651648	-	57	162149322	-	GDI3554	-	hypothetical protein
3477	 68.08	0	3651760..3652326	-	188	162149323	-	GDI3555	-	hypothetical protein
3478	 68.32	0	3652406..3652948	-	180	162149324	-	GDI3556	-	hypothetical protein
3479	 70.41	0	3653003..3653296	-	97	162149325	-	GDI3557	-	hypothetical protein
3480	 71.51	0	3653375..3653746	-	123	162149326	-	GDI3558	-	hypothetical protein
3481	 69.31	0	3653743..3654234	-	163	162149327	-	GDI3559	-	hypothetical protein
3482	 65.96	0	3654231..3654512	-	93	162149328	-	GDI3560	-	hypothetical protein
3483	 65.73	0	3654558..3656489	-	643	162149329	-	GDI3561	-	hypothetical protein
3484	 70.50	0	3656486..3657502	-	338	162149330	-	GDI3562	-	hypothetical protein
3485	 64.51	0	3657513..3658160	-	215	162149331	gp48	GDI3563	-	putative bacteriophage related protein
3486	 61.30	0	3658164..3659636	-	490	162149332	-	GDI3564	-	putative integrase protein
3487	 66.12	0	3659637..3660365	-	242	162149333	gp47	GDI3565	-	putative bacteriophage related protein
3488	 68.06	0	3660366..3660866	-	166	162149334	gp46	GDI3566	-	putative bacteriophage related protein
3489	 68.62	0	3660878..3661390	-	170	162149335	gp45	GDI3567	-	putative bacteriophage related protein
3490	 64.26	0	3661387..3662589	-	400	162149336	-	GDI3568	-	putative bacteriophage related protein
3491	 70.57	0	3662652..3663959	-	435	162149337	-	GDI3569	-	hypothetical protein
3492	 57.06	-1	3664121..3664297	+	58	162149338	-	GDI3570	-	hypothetical protein
3493	 65.87	0	3664329..3664580	+	83	162149339	-	GDI3571	-	hypothetical protein
3494	 64.72	0	3664600..3665010	-	136	162149340	-	GDI3572	-	hypothetical protein
3495	 59.15	-1	3666724..3667362	+	212	162149341	-	GDI3574	-	transposase
3496	 66.67	0	3667452..3668516	+	354	162149342	-	GDI3575	-	hypothetical protein
3497	 55.14	-1	3668513..3668989	+	158	162149343	-	GDI3576	-	hypothetical protein
3498	 66.37	0	3668980..3669648	+	222	162149344	-	GDI3577	-	hypothetical protein
3499	 63.60	0	3669656..3669883	+	75	162149345	-	GDI3578	-	hypothetical protein
3500	 64.90	0	3671285..3672640	-	451	162149346	-	GDI3580	-	putative phage integrase
3501	 66.99	0	3672861..3674090	+	409	162149347	-	GDI3581	-	putative phage integrase
3502	 62.50	0	3674190..3674621	+	143	162149348	-	GDI3582	-	hypothetical protein
3503	 66.67	0	3674664..3675683	+	339	162149349	-	GDI3583	-	hypothetical protein
3504	 43.06	-2	3675776..3675919	-	47	162149350	-	GDI3584	-	hypothetical protein
3505	 45.71	-2	3676053..3676157	-	34	162149351	-	GDI3585	-	hypothetical protein
3506	 57.02	-1	3676167..3676892	+	241	162149352	-	GDI3586	-	hypothetical protein
3507	 56.64	-1	3676818..3677246	-	142	162149353	-	GDI3587	-	hypothetical protein
3508	 37.41	-2	3677714..3677983	-	89	162149354	-	GDI3588	-	hypothetical protein
3509	 58.73	-1	3677980..3678231	-	83	162149355	-	GDI3589	-	hypothetical protein
3510	 66.15	0	3678362..3678553	+	63	162149356	-	GDI3590	-	hypothetical protein
3511	 65.35	0	3678550..3678777	+	75	162149357	-	GDI3591	-	hypothetical protein
3512	 65.26	0	3678765..3679049	+	94	162149358	-	GDI3592	-	hypothetical protein
3513	 65.67	0	3679039..3679440	+	133	162149359	-	GDI3593	-	hypothetical protein
3514	 66.17	0	3679440..3679640	+	66	162149360	-	GDI3594	-	hypothetical protein
3515	 62.04	0	3679637..3679852	+	71	162149361	-	GDI3595	-	hypothetical protein
3516	 57.59	-1	3679989..3680594	-	201	162149362	-	GDI3596	-	hypothetical protein
3517	 65.31	0	3680622..3681209	-	195	162149363	-	GDI3597	-	hypothetical protein
3518	 60.46	0	3681185..3682054	+	289	162149364	-	GDI3598	-	hypothetical protein
3519	 67.94	0	3682051..3682365	+	104	162149365	-	GDI3599	-	hypothetical protein
3520	 64.97	0	3682362..3684890	+	842	162149366	-	GDI3600	-	hypothetical protein
3521	 67.58	0	3685170..3685829	+	219	162149367	-	GDI3601	-	hypothetical protein
3522	 64.29	0	3685826..3686623	+	265	162149368	-	GDI3602	-	hypothetical protein
3523	 49.32	-2	3686684..3686977	+	97	162149369	-	GDI3603	-	hypothetical protein
3524	 55.42	-1	3687116..3687355	+	79	162149370	-	GDI3604	-	hypothetical protein
3525	 64.84	0	3687352..3689598	+	748	162149371	-	GDI3605	-	hypothetical protein
3526	 69.65	0	3690126..3691565	-	479	162149372	-	GDI3606	-	hypothetical protein
3527	 65.15	0	3691716..3691781	-	21	162149373	-	GDI3607	-	hypothetical protein
3528	 68.06	0	3692164..3693381	+	405	162149374	-	GDI3608	-	hypothetical protein
3529	 61.47	0	3693360..3693782	-	140	162149375	-	GDI3609	-	hypothetical protein
3530	 62.96	0	3693772..3693987	+	71	162149376	-	GDI3610	-	hypothetical protein
3531	 63.41	0	3694142..3694510	-	122	162149377	-	GDI3611	-	hypothetical protein
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.