IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2873	 69.13	0	3034758..3035570	-	270	162148719	-	GDI2947	-	putative ABC-type proline/glycine betaine transport protein
2874	 67.60	0	3035610..3037763	-	717	162148720	-	GDI2948	-	putative metallopeptidase
2875	 68.93	0	3037777..3038439	-	220	162148721	-	GDI2949	-	putative stress responsive protein
2876	 65.33	0	3038436..3039260	-	274	162148722	-	GDI2950	-	hypothetical protein
2877	 69.96	0	3039486..3040700	+	404	162148723	sucC	GDI2951	-	putative succinyl-CoA synthetase beta chain
2878	 71.43	0	3040700..3041581	+	293	162148724	sucD	GDI2952	-	putative succinyl-CoA ligase [GDP-forming] alpha-chain
2879	 69.21	0	3041613..3042713	+	366	162148725	bioB	GDI2953	-	putative biotin synthase
2880	 69.97	0	3042766..3043401	+	211	162148726	-	GDI2954	-	hypothetical protein
2881	 69.24	0	3043404..3044141	+	245	162148727	exsB	GDI2955	-	succinoglycan protein
2882	 70.15	0	3044116..3044661	+	181	162148728	-	GDI2956	-	hypothetical protein
2883	 69.87	0	3044790..3046130	+	446	162148729	-	GDI2957	-	putative sulfate transporter
2884	 75.50	+1	3046137..3046985	-	282	162148730	-	GDI2958	-	hypothetical protein
2885	 67.51	0	3046982..3047935	-	317	162148731	-	GDI2959	-	putative ABC transporter substrate-binding protein
2886	 69.83	0	3047936..3048631	-	231	162148732	aatB	GDI2960	-	putative aspartate aminotransferase B
2887	 69.02	0	3048635..3049525	-	296	162148733	-	GDI2961	-	putative ABC transport system permease protein
2888	 68.56	0	3049525..3051852	-	775	162148734	-	GDI2962	-	putative adenylate cyclase
2889	 61.67	0	3051860..3051979	-	39	162148735	-	GDI2963	-	hypothetical protein
2890	 66.08	0	3051979..3052659	-	226	162148736	dnaQ	GDI2964	-	putative DNA polymerase III epsilon subunit
2891	 71.87	0	3052656..3053270	-	204	162148737	coaE	GDI2965	-	putative dephospho-CoA kinase
2892	 71.10	0	3053272..3054150	-	292	162148738	aroE	GDI2966	-	putative shikimate dehydrogenase
2893	 70.18	0	3054147..3054944	-	265	162148739	-	GDI2967	-	putative N-formylglutamate amidohydrolase
2894	 73.40	+1	3055021..3055629	-	202	162148740	tlpA	GDI2968	-	putative Thiol:disulfide interchange protein tlpA
2895	 68.90	0	3055633..3057063	+	476	162148741	argH	GDI2969	-	argininosuccinate lyase
2896	 74.00	+1	3057060..3057209	+	49	162148742	-	GDI2970	-	hypothetical protein
2897	 62.16	0	3057221..3058351	-	376	162148743	-	GDI2971	-	putative acyltransferase
2898	 75.10	+1	3058391..3061282	-	963	162148744	-	GDI2972	-	hypothetical protein
2899	 71.82	0	3061290..3062765	-	491	162148745	lysA	GDI2973	-	putative diaminopimelate decarboxylase
2900	 70.93	0	3062765..3063163	+	132	162148746	cda	GDI2974	-	putative cytidine deaminase
2901	 67.19	0	3063170..3064498	-	442	162148747	-	GDI2975	-	putative O-antigen polymerase
2902	 63.13	0	3064544..3065278	-	244	162148748	-	GDI2976	-	hypothetical protein
2903	 65.43	0	3065853..3067304	-	483	162148749	gatB	GDI2977	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2904	 69.63	0	3067301..3068785	-	494	162148750	gatA	GDI2978	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
2905	 65.28	0	3068785..3069072	-	95	162148751	gatC	GDI2979	-	glutamyl-tRNA(Gln) amidotransferase subunit C
2906	 70.75	0	3069148..3069612	+	154	162148752	-	GDI2980	-	putative Holliday junction resolvase
2907	 54.97	-1	3069741..3069911	-	56	162148753	-	GDI2981	-	hypothetical protein
2908	 70.18	0	3069917..3070798	+	293	162148754	-	GDI2982	-	putative N-formylglutamate amidohydrolase
2909	 67.22	0	3070804..3071163	-	119	162148755	-	GDI2983	-	hypothetical protein
2910	 68.84	0	3071626..3073599	-	657	162148756	-	GDI2984	-	hypothetical protein
2911	 60.59	0	3074150..3074626	-	158	162148757	-	GDI2986	-	putative transposase
2912	 37.45	-2	3074732..3075874	-	380	162148758	-	GDI2987	-	putative methyltransferase
2913	 63.47	0	3076029..3076559	-	176	162148759	-	GDI2988	-	transposase
2914	 61.11	0	3076835..3077878	-	347	162148760	-	GDI2989	-	transposase IS116/IS110/IS902 family protein
2915	 58.07	-1	3077908..3078291	-	127	162148761	-	GDI2990	-	hypothetical protein
2916	 61.11	0	3078511..3079554	+	347	162148762	-	GDI2991	-	transposase
2917	 63.47	0	3079830..3080360	+	176	162148763	-	GDI2992	-	transposase
2918	 48.61	-2	3080429..3081325	+	298	162148764	-	GDI2993	-	hypothetical protein
2919	 60.47	0	3081363..3082814	-	483	162148765	-	GDI2994	-	TPR repeat-containing protein
2920	 67.88	0	3082867..3083031	-	54	162148766	-	GDI2995	-	hypothetical protein
2921	 60.53	0	3083052..3083915	+	287	162148767	-	GDI2996	-	hypothetical protein
2922	 72.94	+1	3083936..3084907	-	323	162148768	-	GDI2997	-	hypothetical protein
2923	 71.18	0	3085004..3086176	+	390	162148769	rhlE	GDI2998	-	putative ATP-dependent RNA helicase rhlE
2924	 70.30	0	3086364..3087410	+	348	162148770	-	GDI2999	-	putative succinylglutamate desuccinylase
2925	 46.72	-2	3087583..3088650	+	355	162148771	-	GDI3000	-	putative metyltransferase
2926	 54.95	-1	3088702..3089742	+	346	162148772	luxE	GDI3001	-	putative long-chain-fatty-acid--luciferin-component ligase
2927	 57.89	-1	3089723..3090976	+	417	162148773	-	GDI3002	-	acyl-CoA reductase
2928	 59.43	-1	3090950..3091681	-	243	162148774	fabG	GDI3003	-	3-oxoacyl-[acyl-carrier-protein] reductase
2929	 59.06	-1	3091674..3092015	-	113	162148775	-	GDI3004	-	hypothetical protein
2930	 60.77	0	3092029..3093621	-	530	162148776	-	GDI3005	-	putative flavoproteins oxidoreductases
2931	 52.29	-2	3093618..3094097	-	159	162148777	fabZ	GDI3006	-	putative (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2932	 56.71	-1	3094170..3095555	-	461	162148778	menE	GDI3007	-	putative 2-succinylbenzoate--CoA ligase
2933	 47.92	-2	3095557..3095796	-	79	162148779	-	GDI3008	-	hypothetical protein
2934	 59.72	-1	3095806..3096438	-	210	162148780	-	GDI3009	-	acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
2935	 57.42	-1	3096449..3097411	-	320	162148781	-	GDI3010	-	putative transketolase
2936	 57.24	-1	3097437..3098189	-	250	162148782	-	GDI3011	-	putative transketolase
2937	 68.56	0	3098376..3099698	-	440	162148783	glyA	GDI3012	-	Serine hydroxymethyltransferase
2938	 66.67	0	3099799..3101346	+	515	162148784	-	GDI3013	-	putative amino acid permease protein
2939	 68.78	0	3101448..3102443	+	331	162148785	hemB	GDI3014	-	delta-aminolevulinic acid dehydratase
2940	 67.18	0	3102645..3103427	+	260	162148786	ate	GDI3015	-	arginyl-tRNA-protein transferase
2941	 67.25	0	3103434..3105665	-	743	162148787	parC	GDI3016	-	DNA topoisomerase IV subunit A
2942	 73.07	+1	3105730..3106494	-	254	162148788	recO	GDI3017	-	putative DNA repair protein recO
2943	 68.96	0	3106544..3107458	-	304	162148789	tst	GDI3018	-	elongation factor Ts
2944	 75.00	+1	3107586..3107717	-	43	162148790	-	GDI3019	-	hypothetical protein
2945	 64.26	0	3107781..3108527	-	248	162148791	rpsB	GDI3020	-	30S ribosomal protein S2
2946	 69.44	0	3108564..3111992	-	1142	162148792	dnaE	GDI3021	-	DNA polymerase III subunit alpha
2947	 71.85	0	3112002..3112715	-	237	162148793	lolD	GDI3022	-	putative lipoprotein-releasing system ATP-binding protein lolD
2948	 64.82	0	3112708..3113955	-	415	162148794	lolC	GDI3023	-	putative lipoprotein-releasing system transmembrane protein
2949	 66.25	0	3113959..3115389	-	476	162148795	proS	GDI3024	-	prolyl-tRNA synthetase
2950	 68.36	0	3115758..3117410	-	550	162148796	-	GDI3025	-	RNA-metabolising metallo-beta-lactamase protein
2951	 64.66	0	3117459..3117707	+	82	162148797	-	GDI3026	-	hypothetical protein
2952	 69.48	0	3117704..3118486	-	260	162148798	birA	GDI3027	-	putative biotin--[acetyl-CoA-carboxylase] synthetase
2953	 64.43	0	3118483..3119910	-	475	162148799	nouN	GDI3028	-	putative NADH-quinone oxidoreductase chain N
2954	 65.34	0	3119937..3121817	-	626	162148800	nouL	GDI3029	-	putative NADH-quinone oxidoreductase chain L
2955	 59.57	-1	3121885..3122208	-	107	162148801	nouK	GDI3030	-	putative NADH-quinone oxidoreductase chain K
2956	 66.01	0	3122205..3122966	-	253	162148802	nouJ	GDI3031	-	putative NADH-quinone oxidoreductase chain J
2957	 62.78	0	3123081..3123569	-	162	162148803	nouI	GDI3032	-	NADH dehydrogenase subunit I
2958	 63.84	0	3123569..3124594	-	341	162148804	nouH	GDI3033	-	putative NADH-quinone oxidoreductase chain H
2959	 68.94	0	3124601..3126670	-	689	162148805	nouG	GDI3034	-	NADH dehydrogenase subunit G
2960	 65.69	0	3126676..3128001	-	441	162148806	nouF	GDI3035	-	NADH dehydrogenase I subunit F
2961	 66.97	0	3128017..3128676	-	219	162148807	nouE	GDI3036	-	NADH-quinone oxidoreductase chain E
2962	 64.48	0	3128673..3129953	-	426	162148808	nouD	GDI3037	-	NADH dehydrogenase subunit D
2963	 64.64	0	3129961..3130602	-	213	162148809	nouC	GDI3038	-	NADH-quinone oxidoreductase chain C
2964	 65.62	0	3130619..3131194	-	191	162148810	nuoB	GDI3039	-	NADH dehydrogenase subunit B
2965	 59.02	-1	3131217..3131582	-	121	162148811	nouA	GDI3040	-	putative NADH-ubiquinone oxidoreductase chain 3
2966	 62.11	0	3132183..3132467	-	94	162148812	hup	GDI3041	-	DNA-binding protein HU
2967	 65.08	0	3132629..3135142	-	837	162148813	lon	GDI3042	-	putative ATP-dependent protease La
2968	 63.10	0	3135370..3136629	-	419	162148814	clpX	GDI3043	-	ATP-dependent protease ATP-binding subunit
2969	 64.95	0	3136769..3137407	-	212	162148815	clp	GDI3044	-	ATP-dependent Clp protease proteolytic subunit
2970	 66.97	0	3137645..3138982	-	445	162148816	tig	GDI3045	-	trigger factor
2971	 76.20	+1	3139179..3140657	-	492	162148817	-	GDI3046	-	putative sugar kinase
2972	 65.56	0	3140777..3141229	+	150	162148818	-	GDI3047	-	putative integral membrane protein
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.