IslandPathversion 1.0

IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.22 STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2760	 63.31	0	2912357..2925718	+	4453	162148606	-	GDI2833	-	putative nonribosomal peptide synthetases (NPRS)
2761	 52.14	-2	2925841..2926542	+	233	162148607	-	GDI2834	-	putative sulfotransferase
2762	 54.76	-1	2926672..2927889	+	405	162148608	-	GDI2835	-	major facilitator transporter
2763	 49.21	-2	2928234..2928863	-	209	162148609	-	GDI2836	-	putative autoinducer synthesis protein
2764	 50.39	-2	2928999..2929895	+	298	162148610	-	GDI2837	-	LuxR family transcriptional regulator
2765	 49.72	-2	2930022..2930741	+	239	162148611	-	GDI2838	-	LuxR family transcriptional regulator
2766	 58.05	-1	2930872..2931138	+	88	162148612	-	GDI2839	-	putative transposase
2767	 61.03	0	2931162..2931977	+	271	162148613	-	GDI2840	-	putative integrase
2768	 61.31	0	2932370..2933302	-	310	162148614	-	GDI2841	-	putative aldo-keto reductase
2769	 60.13	-1	2933396..2934451	-	351	162148615	-	GDI2842	-	putative NAD dependent epimerase/dehydratase protein
2770	 62.58	0	2934462..2935244	-	260	162148616	-	GDI2843	-	putative intracellular protease/amidase
2771	 64.96	0	2935367..2936245	+	292	162148617	-	GDI2844	-	LysR family transcriptional regulator
2772	 62.53	0	2936368..2936778	+	136	162148618	-	GDI2845	-	hypothetical protein
2773	 60.94	0	2936717..2937502	-	261	162148619	tetR	GDI2846	-	TetR family transcriptional regulator
2774	 61.82	0	2937532..2938047	+	171	162148620	-	GDI2847	-	putative carboxymuconolactone decarboxylase
2775	 65.76	0	2938198..2939190	+	330	162148621	-	GDI2848	-	putative multidrug resistance protein
2776	 65.44	0	2939187..2940740	+	517	162148622	-	GDI2849	-	putative multidrug resistance protein
2777	 65.25	0	2940737..2942146	+	469	162148623	-	GDI2850	-	putative multidrug efflux MFS outer membrane protein
2778	 51.46	-2	2942185..2943243	-	352	162148624	-	GDI2851	-	LysR family transcriptional regulator
2779	 52.97	-2	2943499..2943936	-	145	162148625	-	GDI2852	-	hypothetical protein
2780	 60.10	-1	2944022..2944858	-	278	162148626	-	GDI2853	-	putative transposase
2781	 47.14	-2	2944909..2945118	-	69	162148627	-	GDI2854	-	hypothetical protein
2782	 57.99	-1	2945152..2945589	-	145	162148628	gloA	GDI2855	-	putative lactoylglutathione lyase
2783	 53.65	-2	2945636..2946334	-	232	162148629	-	GDI2856	-	hypothetical protein
2784	 54.69	-1	2946358..2946933	-	191	162148630	-	GDI2857	-	putative peptidase C56, PfpI
2785	 56.43	-1	2946992..2947411	-	139	162148631	-	GDI2858	-	hypothetical protein
2786	 58.43	-1	2947507..2947773	+	88	162148632	-	GDI2859	-	putative transposase
2787	 63.41	0	2947797..2948624	+	275	162148633	-	GDI2860	-	putative integrase
2788	 50.94	-2	2948610..2948876	-	88	162148634	-	GDI2861	-	hypothetical protein
2789	 64.94	0	2949183..2950916	-	577	162148635	-	GDI2862	-	hypothetical protein
2790	 68.06	0	2951164..2951667	-	167	162148636	slt	GDI2863	-	putative lytic murein transglycosylase
2791	 66.83	0	2951826..2952422	-	198	162148637	-	GDI2864	-	hypothetical protein
2792	 66.67	0	2952419..2952760	-	113	162148638	-	GDI2865	-	hypothetical protein
2793	 69.21	0	2952815..2953444	-	209	162148639	traF	GDI2866	-	putative conjugal transfer protein traF
2794	 70.44	0	2953441..2953917	-	158	162148640	-	GDI2867	-	hypothetical protein
2795	 71.51	0	2953914..2954657	-	247	162148641	-	GDI2868	-	DNA methylase N-4/N-6 domain-containing protein
2796	 66.90	0	2954897..2955745	-	282	162148642	-	GDI2869	-	putative replication protein A
2797	 66.67	0	2955747..2956031	-	94	162148643	-	GDI2870	-	hypothetical protein
2798	 65.10	0	2956030..2956221	+	63	162148644	-	GDI2871	-	hypothetical protein
2799	 65.37	0	2956230..2956460	+	76	162148645	-	GDI2872	-	hypothetical protein
2800	 61.76	0	2956593..2957102	+	169	162148646	-	GDI2873	-	hypothetical protein
2801	 67.84	0	2957128..2957637	-	169	162148647	-	GDI2874	-	hypothetical protein
2802	 57.66	-1	2957672..2958082	+	136	162148648	-	GDI2875	-	hypothetical protein
2803	 64.73	0	2958136..2958393	-	85	162148649	-	GDI2876	-	hypothetical protein
2804	 63.00	0	2958673..2958999	-	108	162148650	-	GDI2877	-	hypothetical protein
2805	 54.63	-1	2959385..2960605	+	406	162148651	-	GDI2878	-	hypothetical protein
2806	 65.01	0	2960619..2961581	-	320	162148652	-	GDI2879	-	hypothetical protein
2807	 68.83	0	2961871..2962935	-	354	162148653	-	GDI2880	-	hypothetical protein
2808	 65.22	0	2963025..2963300	+	91	162148654	hup	GDI2881	-	putative DNA-binding protein HU
2809	 63.03	0	2963378..2964643	-	421	162148655	-	GDI2882	-	hypothetical protein
2810	 65.14	0	2964695..2966860	-	721	162148656	parB	GDI2883	-	putative chromosome partitioning protein parB
2811	 66.44	0	2967195..2967644	+	149	162148657	-	GDI2884	-	putative ROS/MUCR transcriptional regulator protein
2812	 62.10	0	2967701..2968138	-	145	162148658	-	GDI2885	-	putative glutathione S-transferase
2813	 65.31	0	2968679..2971846	-	1055	162148659	dnaE	GDI2886	-	putative DNA polymerase III alpha subunit
2814	 70.62	0	2971843..2973282	-	479	162148660	-	GDI2887	-	putative nucleotidyltransferase
2815	 72.57	+1	2973293..2974003	-	236	162148661	-	GDI2888	-	hypothetical protein
2816	 66.90	0	2974257..2976356	+	699	162148662	uvrD	GDI2889	-	putative DNA helicase II
2817	 65.73	0	2976367..2977008	+	213	162148663	-	GDI2890	-	hypothetical protein
2818	 65.76	0	2977237..2978994	-	585	162148664	-	GDI2891	-	putative ubiquitin-activating enzyme
2819	 64.09	0	2979068..2980114	-	348	162148665	-	GDI2892	-	hypothetical protein
2820	 65.82	0	2980118..2981302	-	394	162148666	-	GDI2893	-	putative patatin-like phospholipase
2821	 66.67	0	2981346..2981567	-	73	162148667	-	GDI2894	-	hypothetical protein
2822	 58.61	-1	2981724..2982083	+	119	162148668	-	GDI2895	-	putative HTH-type transcriptional regulator
2823	 60.54	0	2982086..2982607	+	173	162148669	-	GDI2896	-	hypothetical protein
2824	 59.44	-1	2982708..2984021	+	437	162148670	sbcB	GDI2897	-	putative exodeoxyribonuclease I
2825	 65.81	0	2984252..2984833	-	193	162148671	tetR	GDI2898	-	putative transcriptional regulator tetR
2826	 64.05	0	2984858..2986117	+	419	162148672	-	GDI2899	-	putative mutlidrug resistance protein
2827	 60.61	0	2986285..2986482	-	65	162148673	-	GDI2900	-	hypothetical protein
2828	 62.47	0	2986506..2986982	-	158	162148674	-	GDI2901	-	hypothetical protein
2829	 66.84	0	2986990..2987583	-	197	162148675	-	GDI2902	-	hypothetical protein
2830	 56.70	-1	2988359..2989351	-	330	162148676	-	GDI2904	-	putative integrase
2831	 59.09	-1	2990082..2990345	-	87	162148677	-	GDI2905	-	hypothetical protein
2832	 66.40	0	2990338..2991474	-	378	162148678	trbI	GDI2906	-	putative conjugal transfer protein trbI
2833	 65.48	0	2991582..2992589	-	335	162148679	cagX	GDI2907	-	putative conjugal transfer protein
2834	 66.38	0	2992586..2993278	-	230	162148680	trbF	GDI2908	-	putative conjugal transfer protein trbF
2835	 66.53	0	2993275..2994741	-	488	162148681	trbL	GDI2909	-	putative TrbL/VirB6 conjugal transfer protein
2836	 62.45	0	2994745..2995455	-	236	162148682	trbJ	GDI2910	-	putative conjugal transfer protein trbJ
2837	 63.96	0	2995542..2997977	-	811	162148683	trbE	GDI2911	-	putative conjugal transfer protein trbE
2838	 69.93	0	2997991..2998266	-	91	162148684	trbD	GDI2912	-	putative conjugal transfer protein trbD
2839	 65.55	0	2998266..2998622	-	118	162148685	trbC	GDI2913	-	putative conjugal transfer protein trbC
2840	 67.99	0	2998619..2999674	-	351	162148686	trbB	GDI2914	-	putative conjugal transfer protein trbB
2841	 65.12	0	3000038..3000814	+	258	162148687	-	GDI2915	-	mucR family transcriptional regulatory protein
2842	 68.00	0	3000849..3001298	-	149	162148688	-	GDI2916	-	hypothetical protein
2843	 65.48	0	3001295..3003316	-	673	162148689	traG	GDI2917	-	putative conjugal transfer protein traG
2844	 60.87	0	3003488..3004108	-	206	162148690	tetR	GDI2918	-	putative transcription regulator tetR
2845	 60.55	0	3004324..3005157	-	277	162148691	-	GDI2919	-	hypothetical protein
2846	 63.08	0	3005179..3005457	+	92	162148692	-	GDI2920	-	hypothetical protein
2847	 58.61	-1	3005649..3006095	+	148	162148693	-	GDI2921	-	hypothetical protein
2848	 62.94	0	3006108..3007769	+	553	162148694	-	GDI2922	-	putative DNA recombinase
2849	 61.76	0	3013376..3013762	-	128	162148695	-	GDI2923	-	hypothetical protein
2850	 61.54	0	3013740..3014870	+	376	162148696	-	GDI2924	-	hypothetical protein
2851	 68.45	0	3014939..3016675	+	578	162148697	-	GDI2925	-	acyl-CoA synthetase
2852	 69.81	0	3016717..3016875	+	52	162148698	-	GDI2926	-	hypothetical protein
2853	 59.92	-1	3016872..3017123	+	83	162148699	-	GDI2927	-	putative acyl carrier protein
2854	 67.50	0	3017127..3018329	+	400	162148700	kbl	GDI2928	-	2-amino-3-ketobutyrate coenzyme A ligase
2855	 69.90	0	3018334..3019293	-	319	162148701	-	GDI2929	-	hypothetical protein
2856	 69.34	0	3019293..3020264	-	323	162148702	-	GDI2930	-	diacylglycerol kinase catalytic subunit
2857	 68.77	0	3020386..3021336	+	316	162148703	-	GDI2931	-	putative metallophosphoesterase
2858	 68.07	0	3021353..3022561	+	402	162148704	-	GDI2932	-	putative permease
2859	 69.14	0	3022558..3023691	+	377	162148705	-	GDI2933	-	putative permease
66.22	MEAN

5.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.