IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
128	 58.43	-1	149527..149793	+	88	162145974	-	GDI0140	-	putative transposase
129	 63.41	0	149817..150644	+	275	162145975	-	GDI0141	-	putative transposase
130	 58.51	-1	150772..153837	-	1021	162145976	mdtB	GDI0142	-	putative multidrug resistance protein
131	 65.49	0	153834..154853	-	339	162145977	-	GDI0143	-	HlyD family secretion protein
132	 65.35	0	154999..156519	-	506	162145978	-	GDI0144	-	RND efflux system, outer membrane lipoprotein
133	 62.26	0	156674..157036	+	120	162145979	asrR	GDI0145	-	ArsR family transcriptional regulator
134	 61.41	0	157064..157786	-	240	162145980	-	GDI0146	-	putative polyketide synthase
135	 63.38	0	157878..158546	+	222	162145981	-	GDI0147	-	putative Acyl-protein thioesterase 1
136	 43.50	-2	158576..158752	-	58	162145982	-	GDI0148	-	hypothetical protein
137	 51.97	-2	158764..159144	+	126	162145983	-	GDI0149	-	hypothetical protein
138	 41.65	-2	159468..160670	+	400	162145984	-	GDI0150	-	hypothetical protein
139	 41.52	-2	160670..161011	+	113	162145985	-	GDI0151	-	hypothetical protein
140	 38.48	-2	161011..161574	+	187	162145986	-	GDI0152	-	hypothetical protein
141	 58.43	-1	162193..162459	+	88	162145987	-	GDI0153	-	putative transposase
142	 63.41	0	162483..163310	+	275	162145988	-	GDI0154	-	putative transposase
143	 55.21	-1	164714..165385	+	223	162145989	-	GDI0156	-	TetR family transcriptional regulator
144	 64.90	0	167167..168243	-	358	162145990	-	GDI0158	-	hypothetical protein
145	 71.54	0	168343..169326	-	327	162145991	-	GDI0159	-	dehydrogenase (zinc-binding alcohol dehydrogenase)
146	 74.62	+1	169381..170034	-	217	162145992	-	GDI0160	-	hypothetical protein
147	 73.15	+1	170031..170246	-	71	162145993	-	GDI0161	-	hypothetical protein
148	 70.04	0	170308..171672	+	454	162145994	-	GDI0162	-	putative GTP-binding protein
149	 65.47	0	171697..172869	-	390	162145995	-	GDI0163	-	GGDEF family signaling protein
150	 68.99	0	173133..173519	+	128	162145996	-	GDI0164	-	hypothetical protein
151	 74.66	+1	173540..174952	-	470	162145997	cysG	GDI0165	-	putative siroheme synthase
152	 73.78	+1	174949..175482	-	177	162145998	mobB	GDI0166	-	putatie molybdopterin-guanine dinucleotide biosynthesis protein B
153	 78.36	+2	175595..176227	+	210	162145999	mobA	GDI0167	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
154	 71.18	0	176296..177159	+	287	162146000	-	GDI0168	-	putative DNA binding protein
155	 69.82	0	177163..179733	+	856	162146001	-	GDI0169	-	putative DNA ligase-like protein
156	 67.91	0	179745..180551	-	268	162146002	-	GDI0170	-	putative DNA binding protein
157	 74.00	+1	180573..180995	-	140	162146003	-	GDI0171	-	hypothetical protein
158	 68.87	0	181033..182709	-	558	162146004	pdc	GDI0172	-	pyruvate decarboxylase
159	 70.05	0	182752..183696	+	314	162146005	-	GDI0173	-	LysR family transcriptional regulator
160	 67.07	0	183736..184731	-	331	162146006	-	GDI0174	-	hypothetical protein
161	 68.16	0	184770..186242	-	490	162146007	-	GDI0175	-	hypothetical protein
162	 70.51	0	186489..189926	+	1145	162146008	-	GDI0176	-	putative transglutaminase-like protein
163	 67.86	0	190043..191134	+	363	162146009	-	GDI0177	-	hypothetical protein
164	 73.82	+1	191219..193792	+	857	162146010	-	GDI0178	-	hypothetical protein
165	 71.43	0	193789..194691	+	300	162146011	-	GDI0179	-	putative transglutaminase-like protein
166	 63.11	0	194747..194971	-	74	162146012	-	GDI0180	-	hypothetical protein
167	 70.10	0	194990..195979	+	329	162146013	panC	GDI0181	-	putative pantoate--beta-alanine ligase
168	 70.31	0	195995..196186	-	63	162146014	-	GDI0182	-	hypothetical protein
169	 67.85	0	196213..196887	-	224	162146015	lon	GDI0183	-	putative ATP-dependent protease
170	 70.78	0	196952..198070	-	372	162146016	-	GDI0184	-	thioredoxin protein
171	 62.53	0	198376..198786	-	136	162146017	-	GDI0185	-	putative transcriptional regulator
172	 65.39	0	198887..199906	+	339	162146018	-	GDI0186	-	Zinc-type alcohol dehydrogenase-like protein
173	 64.65	0	200124..201014	+	296	162146019	-	GDI0187	-	putative transcriptional regulator LysR
174	 65.02	0	201269..202117	+	282	162146020	-	GDI0188	-	hypothetical protein
175	 65.11	0	202257..203603	+	448	162146021	-	GDI0189	-	putative MFS permease
176	 39.32	-2	203709..203825	+	38	162146022	-	GDI0190	-	hypothetical protein
177	 58.34	-1	203973..206531	+	852	162146023	-	GDI0191	-	putative TonB-dependent receptor
178	 62.53	0	206689..208017	+	442	162146024	-	GDI0192	-	putative sugar transporter
179	 63.78	0	208037..208729	+	230	162146025	-	GDI0193	-	putative demethylmenaquinone methyltransferase protein
180	 56.84	-1	208786..209691	+	301	162146026	-	GDI0194	-	LysR family transcriptional regulator
181	 60.26	-1	209839..210072	+	77	162146027	-	GDI0195	-	hypothetical protein
182	 67.44	0	210069..211487	+	472	162146028	gatA	GDI0196	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A
183	 66.67	0	211606..213219	-	537	162146029	-	GDI0197	-	putative 5-oxoprolinase (ATP-hydrolysing)
184	 69.20	0	213216..215309	-	697	162146030	-	GDI0198	-	putative 5-oxoprolinase (ATP-hydrolysing)
185	 64.93	0	215388..215963	+	191	162146031	-	GDI0199	-	hypothetical protein
186	 74.48	+1	215974..216357	-	127	162146032	-	GDI0200	-	hypothetical protein
187	 68.14	0	216354..217712	-	452	162146033	accC	GDI0201	-	putative biotin carboxylase (Acetyl-CoA carboxylase subunit A)
188	 68.90	0	217705..218151	-	148	162146034	accB	GDI0202	-	putative biotin carboxyl carrier protein of acetyl-CoA carboxylase
189	 67.97	0	218161..218928	-	255	162146035	-	GDI0203	-	hypothetical protein
190	 70.78	0	218949..219920	-	323	162146036	-	GDI0204	-	putative allophanate hydrolase subunit 2
191	 73.83	+1	219917..220558	-	213	162146037	-	GDI0205	-	putative allophanate hydrolase subunit 1
192	 68.10	0	220555..221811	-	418	162146038	-	GDI0206	-	putative glucarate transporter
193	 62.94	0	221882..224509	-	875	162146039	-	GDI0207	-	putative TonB-dependent receptor
194	 66.23	0	224818..225723	+	301	162146040	-	GDI0208	-	LysR family transcriptional regulator
195	 68.80	0	225720..226985	+	421	162146041	-	GDI0209	-	allantoate amidohydrolase
196	 66.89	0	226988..228325	+	445	162146042	-	GDI0210	-	hypothetical protein
197	 72.71	+1	228330..229289	+	319	162146043	-	GDI0211	-	putative D-3-phosphoglycerate dehydrogenase
198	 64.41	0	229312..229755	-	147	162146044	-	GDI0212	-	putative glyoxalase
199	 60.72	0	229892..230917	-	341	162146045	-	GDI0213	-	choloylglycine hydrolase
200	 62.50	0	231154..231945	-	263	162146046	-	GDI0214	-	putative NAD(P)H dehydrogenase (quinone)
201	 66.78	0	232048..232965	+	305	162146047	-	GDI0215	-	LysR family transcriptional regulator
202	 70.95	0	233000..233863	-	287	162146048	-	GDI0216	-	LysR family transcriptional regulator
203	 70.35	0	233939..234943	+	334	162146049	pdxA	GDI0217	-	putative 4-hydroxythreonine-4-phosphate dehydrogenase
204	 66.52	0	234940..235620	+	226	162146050	-	GDI0218	-	hypothetical protein
205	 58.95	-1	235635..235997	+	120	162146051	-	GDI0219	-	hypothetical protein
206	 63.49	0	236040..236921	-	293	162146052	-	GDI0220	-	LysR family transcriptional regulator
207	 63.81	0	237196..237930	+	244	162146053	-	GDI0221	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
208	 56.26	-1	238026..239072	-	348	162146054	-	GDI0222	-	putative integrase
209	 66.67	0	239180..239704	+	174	162146055	-	GDI0223	-	putative NADP oxidoreductase coenzyme
210	 62.12	0	239716..240903	-	395	162146056	nhaA	GDI0224	-	putative Na(+)/H(+) antiporter 1
211	 63.18	0	241014..241214	-	66	162146057	-	GDI0225	-	hypothetical protein
212	 62.50	0	241282..241521	-	79	162146058	-	GDI0226	-	hypothetical protein
213	 65.08	0	241518..241643	-	41	162146059	-	GDI0227	-	hypothetical protein
214	 69.46	0	241653..242081	-	142	162146060	-	GDI0228	-	hypothetical protein
215	 69.09	0	242078..242530	-	150	162146061	-	GDI0229	-	putative NADP oxidoreductase coenzyme
216	 67.94	0	242559..243266	-	235	162146062	tetR	GDI0230	-	putative transcriptional regulator
217	 67.87	0	243372..244118	+	248	162146063	-	GDI0231	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
218	 68.08	0	244222..245286	+	354	162146064	-	GDI0232	-	flavin oxidoreductase
219	 72.57	+1	245340..245576	+	78	162146065	-	GDI0233	-	hypothetical protein
220	 66.43	0	245620..246039	-	139	162146066	-	GDI0234	-	putative response regulator
221	 65.81	0	246340..247977	+	545	162146067	-	GDI0235	-	putative multidrug resistance protein
222	 69.64	0	247994..249070	+	358	162146068	-	GDI0236	-	HlyD family secretion protein
223	 70.54	0	249075..250598	+	507	162146069	-	GDI0237	-	putative outer membrane protein
224	 72.95	+1	250610..251341	+	243	162146070	-	GDI0238	-	hypothetical protein
225	 43.40	-2	251507..251665	-	52	162146071	-	GDI0239	-	hypothetical protein
226	 60.92	0	251691..251864	-	57	162146072	-	GDI0240	-	hypothetical protein
227	 69.42	0	251889..253955	+	688	162146073	-	GDI0241	-	transketolase
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.