IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1479	 63.36	0	1541815..1542843	+	342	162147325	-	GDI1531	-	transposase
1480	 61.78	0	1544265..1545062	-	265	162147326	-	GDI1535	-	putative transposase
1481	 54.81	-1	1545376..1546455	-	359	162147327	-	GDI1537	-	putative transposase
1482	 62.25	0	1546656..1546904	-	82	162147328	-	GDI1538	-	hypothetical protein
1483	 61.62	0	1547029..1547583	-	184	162147329	-	GDI1539	-	hypothetical protein
1484	 66.67	0	1547738..1548103	-	121	162147330	-	GDI1540	-	hypothetical protein
1485	 34.92	-2	1548201..1548326	+	41	162147331	-	GDI1541	-	hypothetical protein
1486	 61.30	0	1548407..1549039	-	210	162147332	-	GDI1542	-	hypothetical protein
1487	 64.39	0	1549062..1549544	+	160	162147333	-	GDI1543	-	hypothetical protein
1488	 61.19	0	1549723..1549941	-	72	162147334	-	GDI1544	-	hypothetical protein
1489	 66.57	0	1550223..1551311	+	362	162147335	-	GDI1545	-	transposase
1490	 63.84	0	1551400..1551576	+	58	162147336	-	GDI1546	-	hypothetical protein
1491	 45.00	-2	1551826..1551885	+	19	162147337	-	GDI1547	-	hypothetical protein
1492	 67.47	0	1552113..1554224	+	703	162147338	-	GDI1548	-	hypothetical protein
1493	 65.51	0	1554390..1554821	+	143	162147339	-	GDI1549	-	putative regulator protein
1494	 50.54	-2	1554854..1554946	+	30	162147340	-	GDI1550	-	hypothetical protein
1495	 64.03	0	1555213..1556007	+	264	162147341	-	GDI1551	-	putative transposase
1496	 63.41	0	1556027..1556854	-	275	162147342	-	GDI1552	-	putative integrase
1497	 58.43	-1	1556878..1557144	-	88	162147343	-	GDI1553	-	putative transposase
1498	 60.36	-1	1557173..1557727	-	184	162147344	-	GDI1554	-	putative transposase
1499	 65.88	0	1558072..1558581	+	169	162147345	-	GDI1555	-	putative transposase
1500	 53.99	-2	1558582..1558944	+	120	162147346	-	GDI1556	-	hypothetical protein
1501	 60.70	0	1558978..1559748	+	256	162147347	-	GDI1557	-	putative transposase
1502	 60.81	0	1559745..1560785	+	346	162147348	-	GDI1558	-	putative transposase
1503	 63.28	0	1561061..1561591	+	176	162147349	-	GDI1559	-	putative transposase
1504	 46.30	-2	1561557..1561718	-	53	162147350	-	GDI1560	-	hypothetical protein
1505	 53.61	-2	1561867..1563789	-	640	162147351	kup	GDI1561	-	putative potassium transport system protein kup
1506	 60.11	-1	1563880..1565145	-	421	162147352	-	GDI1562	-	hypothetical protein
1507	 61.12	0	1565561..1567309	+	582	162147353	kdpA	GDI1563	-	potassium-transporting ATPase subunit A
1508	 62.46	0	1567326..1569440	+	704	162147354	kdpB	GDI1564	-	potassium-transporting ATPase subunit B
1509	 64.50	0	1569514..1570068	+	184	162147355	kdpC	GDI1565	-	potassium-transporting ATPase C chain
1510	 61.60	0	1570069..1572753	+	894	162147356	kdpD	GDI1566	-	putative two-component sensor histidine kinase, sensor protein kdpD
1511	 57.35	-1	1572750..1573436	+	228	162147357	kdpE	GDI1567	-	putative transcriptional regulatory protein kdpE
1512	 61.26	0	1573734..1574750	-	338	162147358	-	GDI1569	-	putative transposase
1513	 59.20	-1	1574862..1575611	+	249	162147359	-	GDI1570	-	transposase
1514	 61.78	0	1576161..1576958	-	265	162147360	-	GDI1573	-	putative transposase
1515	 49.90	-2	1577344..1577820	+	158	162147361	-	GDI1574	-	hypothetical protein
1516	 56.70	-1	1578890..1579882	+	330	162147362	-	GDI1576	-	putative integrase, catalytic region
1517	 45.16	-2	1579832..1582468	-	878	162147363	-	GDI1577	-	hypothetical protein
1518	 60.92	0	1582546..1583259	-	237	162147364	-	GDI1578	-	putative transposase
1519	 65.25	0	1583252..1584097	-	281	162147365	istB	GDI1579	-	putative transposase
1520	 65.28	0	1584094..1585320	-	408	162147366	istA	GDI1580	-	putative transposase
1521	 65.14	0	1585443..1586030	-	195	162147367	-	GDI1581	-	putative transposase
1522	 53.60	-2	1586319..1587680	+	453	162147368	-	GDI1582	-	hypothetical protein
1523	 60.10	-1	1588017..1588853	+	278	162147369	-	GDI1583	-	putative transposase
1524	 57.30	-1	1588782..1589486	-	234	162147370	-	GDI1584	-	hypothetical protein
1525	 57.09	-1	1589483..1590223	-	246	162147371	-	GDI1585	-	hypothetical protein
1526	 54.20	-2	1590411..1590755	-	114	162147372	-	GDI1586	-	hypothetical protein
1527	 48.15	-2	1590754..1590888	+	44	162147373	-	GDI1587	-	hypothetical protein
1528	 56.36	-1	1591194..1592144	+	316	162147374	trwC	GDI1588	-	putative conjugal transfer protein TrwC
1529	 63.21	0	1592242..1593774	+	510	162147375	istA	GDI1589	-	putative transposase
1530	 60.90	0	1593764..1594543	+	259	162147376	-	GDI1590	-	IstB-like ATP-binding protein
1531	 61.78	0	1594872..1595669	+	265	162147377	-	GDI1592	-	putative transposase
1532	 55.76	-1	1595984..1597579	-	531	162147378	-	GDI1593	-	putative phage integrase
1533	 72.06	+1	1597804..1598526	-	240	162147379	-	GDI1594	-	putative zinc metallopeptidase
1534	 70.60	0	1598523..1599005	-	160	162147380	-	GDI1595	-	hypothetical protein
1535	 80.22	+2	1599061..1599510	-	149	162147381	-	GDI1596	-	hypothetical protein
1536	 71.58	0	1599507..1600442	-	311	162147382	-	GDI1597	-	PotD/PotF family solute-binding protein
1537	 73.96	+1	1600550..1601659	-	369	162147383	-	GDI1598	-	putative ABC-transporter ATP-binding protein
1538	 63.80	0	1601733..1602011	+	92	162147384	-	GDI1599	-	hypothetical protein
1539	 67.80	0	1602054..1602494	+	146	162147385	-	GDI1600	-	hypothetical protein
1540	 66.03	0	1602614..1603243	+	209	162147386	-	GDI1601	-	putative transcriptional regulator
1541	 67.61	0	1603240..1605468	+	742	162147387	-	GDI1602	-	putative fusaric acid resistance protein
1542	 59.49	-1	1605468..1605662	+	64	162147388	-	GDI1603	-	hypothetical protein
1543	 67.32	0	1605696..1606607	+	303	162147389	-	GDI1604	-	HlyD family secretion protein
1544	 70.28	0	1606624..1608147	+	507	162147390	-	GDI1605	-	putative Outer membrane protein
1545	 60.00	-1	1608346..1609485	+	379	162147391	-	GDI1606	-	hypothetical protein
1546	 59.98	-1	1609473..1610684	-	403	162147392	-	GDI1607	-	hypothetical protein
1547	 63.09	0	1610740..1611828	-	362	162147393	-	GDI1608	-	hypothetical protein
1548	 64.15	0	1611832..1614729	-	965	162147394	-	GDI1609	-	putative glycosyl transferase
1549	 68.69	0	1614840..1616666	+	608	162147395	-	GDI1610	-	hypothetical protein
1550	 70.40	0	1616745..1618433	+	562	162147396	-	GDI1611	-	putative aminopeptidase
1551	 68.67	0	1618442..1619890	-	482	162147397	-	GDI1612	-	outer membrane protein
1552	 67.53	0	1619887..1621038	-	383	162147398	-	GDI1613	-	HlyD family secretion protein
1553	 62.68	0	1621090..1622643	-	517	162147399	-	GDI1614	-	putative transporter protein
1554	 41.53	-2	1622750..1622932	+	60	162147400	-	GDI1615	-	hypothetical protein
1555	 62.49	0	1622974..1624434	+	486	162147401	oprB	GDI1616	-	porin OprB
1556	 65.23	0	1624982..1627414	-	810	162147402	-	GDI1617	-	putative phosphoketolase
1557	 71.28	0	1627411..1628451	-	346	162147403	ackA	GDI1618	-	acetate kinase
1558	 76.52	+1	1628744..1629484	-	246	162147404	-	GDI1619	-	hypothetical protein
1559	 68.12	0	1629496..1631487	-	663	162147405	-	GDI1620	-	putative squalene--hopene cyclase
1560	 72.22	+1	1631556..1632869	-	437	162147406	-	GDI1621	-	putative amine oxidase
1561	 72.19	+1	1632874..1633797	-	307	162147407	-	GDI1622	-	putative phytoene synthase
1562	 71.91	0	1633852..1634748	-	298	162147408	-	GDI1623	-	putative phytoene synthase
1563	 70.99	0	1634750..1635952	-	400	162147409	-	GDI1624	-	putative glycosyl transferase
1564	 69.32	0	1635960..1637051	-	363	162147410	dfrA	GDI1625	-	putative dihydroflavonol-4-reductase
1565	 69.70	0	1637172..1638260	+	362	162147411	-	GDI1626	-	hypothetical protein
1566	 70.74	0	1638272..1639180	+	302	162147412	tyrA	GDI1627	-	putative prephenate dehydrogenase
1567	 67.83	0	1639248..1640882	-	544	162147413	mod1	GDI1628	-	malate dehydrogenase
1568	 67.72	0	1640911..1641576	-	221	162147414	cobC	GDI1629	-	Alpha-ribazole phosphatase
1569	 72.53	+1	1641612..1643828	-	738	162147415	-	GDI1630	-	hypothetical protein
1570	 69.42	0	1643939..1644811	+	290	162147416	rmlA	GDI1631	-	glucose-1-phosphate thymidylyltransferase
1571	 71.31	0	1644888..1645382	+	164	162147417	-	GDI1632	-	hypothetical protein
1572	 65.12	0	1645569..1647959	+	796	162147418	tonB	GDI1633	-	putative tTnB-dependent receptor
1573	 65.06	0	1648043..1649284	-	413	162147419	-	GDI1634	-	putative deoxygenase protein
1574	 66.27	0	1651045..1651554	+	169	162147420	-	GDI1636	-	putative tranposase protein
1575	 60.89	0	1651687..1652586	+	299	162147421	-	GDI1637	-	putative tranposase protein
1576	 62.12	0	1652601..1652930	+	109	162147422	-	GDI1638	-	putative tranposase protein
1577	 69.45	0	1653029..1653925	-	298	162147423	-	GDI1639	-	LysR family transcriptional regulator
1578	 67.32	0	1654030..1655094	+	354	162147424	-	GDI1640	-	oxidoreductase
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.