IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1076	 60.18	-1	1116022..1117161	+	379	162146922	-	GDI1127	-	putative transposase
1077	 63.47	0	1117437..1117967	+	176	162146923	-	GDI1128	-	hypothetical protein
1078	 67.48	0	1118077..1121403	-	1108	162146924	mdtC	GDI1129	-	puitative multidrug resistance protein mdtC
1079	 69.86	0	1121432..1122685	-	417	162146925	-	GDI1130	-	putative purine-cytosine permease
1080	 73.93	+1	1122841..1123680	-	279	162146926	-	GDI1131	-	putative short-chain dehydrogenase
1081	 71.14	0	1123768..1124460	+	230	162146927	-	GDI1132	-	guanylate kinase
1082	 72.10	+1	1124467..1125921	+	484	162146928	hldE	GDI1133	-	putative bifunctional protein HldE kinase
1083	 71.97	0	1125918..1127123	+	401	162146929	pmi	GDI1134	-	putative mannose-6-phosphate isomerase
1084	 67.33	0	1127201..1128715	+	504	162146930	-	GDI1135	-	replicative DNA helicase
1085	 73.59	+1	1128733..1129353	-	206	162146931	-	GDI1136	-	hypothetical protein
1086	 71.63	0	1129350..1130759	-	469	162146932	radA	GDI1137	-	DNA repair protein RadA
1087	 68.56	0	1130814..1131605	-	263	162146933	-	GDI1138	-	putative ABC transport
1088	 68.19	0	1131602..1132387	-	261	162146934	-	GDI1139	-	hypothetical protein
1089	 69.18	0	1132788..1134101	+	437	162146935	-	GDI1140	-	putative UDP-glucose 6-dehydrogenase
1090	 69.72	0	1134105..1135349	-	414	162146936	-	GDI1141	-	putative bicyclomycin resistance protein
1091	 72.41	+1	1135510..1136136	-	208	162146937	-	GDI1142	-	hypothetical protein
1092	 72.79	+1	1136296..1136997	+	233	162146938	tetR	GDI1143	-	TetR family transcriptional regulator
1093	 66.36	0	1136945..1139221	-	758	162146939	fdhH	GDI1144	-	formate dehydrogenase alpha subunit
1094	 73.31	+1	1139243..1140100	-	285	162146940	fdhD	GDI1145	-	putative formate dehydrogenase accessory protein
1095	 64.98	0	1140127..1140363	+	78	162146941	-	GDI1146	-	hypothetical protein
1096	 68.01	0	1140524..1141789	+	421	162146942	-	GDI1147	-	pyridine nucleotide-disulphide oxidoreductase
1097	 66.16	0	1141835..1143019	-	394	162146943	-	GDI1148	-	putative mechanosensitive ion channel
1098	 68.83	0	1143033..1145810	-	925	162146944	-	GDI1149	-	hypothetical protein
1099	 69.76	0	1146035..1147036	-	333	162146945	-	GDI1150	-	hypothetical protein
1100	 66.87	0	1147109..1147591	-	160	162146946	ribH	GDI1151	-	putative 6,7-dimethyl-8-ribityllumazine synthase
1101	 70.35	0	1147625..1148899	-	424	162146947	ribAB	GDI1152	-	putative 3,4-dihydroxy-2-butanone 4 phosphate synthase
1102	 67.15	0	1148884..1149501	-	205	162146948	ribE	GDI1153	-	riboflavin synthase subunit alpha
1103	 75.48	+1	1149483..1150583	-	366	162146949	ribD	GDI1154	-	riboflavin biosynthesis protein
1104	 69.29	0	1150993..1151259	+	88	162146950	-	GDI1155	-	hypothetical protein
1105	 73.09	+1	1151387..1152895	+	502	162146951	-	GDI1156	-	putative sodium cotransporter
1106	 70.08	0	1152892..1154064	+	390	162146952	-	GDI1157	-	putative beta-lactamase/acylhydrolase
1107	 68.53	0	1154159..1154695	+	178	162146953	-	GDI1158	-	putative thioesterase superfamily protein
1108	 60.99	0	1154685..1155953	-	422	162146954	-	GDI1159	-	putative transmembrane acyltransferase
1109	 65.39	0	1155999..1156862	-	287	162146955	-	GDI1160	-	putative endo-1,3-1,4-beta-glycanase protein
1110	 66.97	0	1157298..1158605	-	435	162146956	-	GDI1161	-	putative MFS transporter
1111	 58.97	-1	1158866..1161229	-	787	162146957	-	GDI1162	-	putative TonB-dependent receptor
1112	 66.78	0	1161651..1162544	+	297	162146958	-	GDI1163	-	putative endonuclease
1113	 63.48	0	1162634..1163575	+	313	162146959	-	GDI1164	-	hypothetical protein
1114	 69.52	0	1163694..1164569	+	291	162146960	-	GDI1165	-	putative diacylglycerol kinase family protein
1115	 65.65	0	1164592..1165479	-	295	162146961	-	GDI1166	-	putative transmembrane protein
1116	 65.90	0	1165684..1166601	+	305	162146962	araC	GDI1167	-	AraC family transcriptional regulator
1117	 65.97	0	1166589..1168610	-	673	162146963	-	GDI1168	-	hypothetical protein
1118	 64.19	0	1168872..1169801	-	309	162146964	-	GDI1169	-	putative formyltetrahydrofolate deformylase
1119	 72.22	+1	1169836..1170159	-	107	162146965	-	GDI1170	-	hypothetical protein
1120	 67.28	0	1170235..1170723	+	162	162146966	-	GDI1171	-	hypothetical protein
1121	 47.62	-2	1170928..1171074	-	48	162146967	-	GDI1172	-	hypothetical protein
1122	 69.89	0	1171078..1171170	+	30	162146968	-	GDI1173	-	hypothetical protein
1123	 66.27	0	1171186..1172181	-	331	162146969	-	GDI1174	-	hypothetical protein
1124	 70.46	0	1172214..1173872	-	552	162146970	-	GDI1175	-	hypothetical protein
1125	 69.60	0	1173883..1174632	-	249	162146971	-	GDI1176	-	putative glycosyl transferase
1126	 72.32	+1	1174653..1175147	-	164	162146972	atpF	GDI1177	-	putative ATP synthase
1127	 69.28	0	1175178..1175789	-	203	162146973	-	GDI1178	-	putative ATP synthase
1128	 64.89	0	1175804..1176028	-	74	162146974	-	GDI1179	-	putative ATP synthase
1129	 63.33	0	1176084..1176833	-	249	162146975	atpB	GDI1180	-	F0F1 ATP synthase subunit A
1130	 67.89	0	1176864..1177190	-	108	162146976	atpI	GDI1181	-	putative ATP synthase
1131	 73.44	+1	1177364..1178146	-	260	162146977	-	GDI1182	-	hypothetical protein
1132	 71.55	0	1178236..1179813	-	525	162146978	purH	GDI1183	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1133	 71.52	0	1179950..1180753	-	267	162146979	ilvE	GDI1184	-	putative aminotransferase, class IV
1134	 74.12	+1	1180756..1182150	-	464	162146980	pabB	GDI1185	-	putative Para-aminobenzoate synthase
1135	 72.75	+1	1182156..1184012	-	618	162146981	ptsI	GDI1186	-	putative phosphoenolpyruvate-protein phosphotransferase
1136	 67.90	0	1183999..1184322	-	107	162146982	ptsO	GDI1187	-	putative phosphoryl transfer system, HPr
1137	 68.47	0	1184329..1184826	-	165	162146983	manX	GDI1188	-	putative phosphotransferase enzyme IIA
1138	 67.18	0	1184823..1185980	-	385	162146984	-	GDI1189	-	hypothetical protein
1139	 70.16	0	1186032..1186517	-	161	162146985	-	GDI1190	-	putative HPr kinase
1140	 65.73	0	1186634..1186954	+	106	162146986	-	GDI1191	-	putative endoribonuclease
1141	 74.20	+1	1187110..1188012	+	300	162146987	-	GDI1192	-	putative ABC tranporter protein
1142	 69.85	0	1188009..1188761	+	250	162146988	-	GDI1193	-	putative ABC tranporter protein
1143	 70.91	0	1188758..1189864	+	368	162146989	-	GDI1194	-	putative two-component system sensor protein
1144	 70.30	0	1189861..1190466	+	201	162146990	-	GDI1195	-	putative two-component system regulatory protein
1145	 64.91	0	1190555..1191067	-	170	162146991	-	GDI1196	-	hypothetical protein
1146	 68.72	0	1191129..1192055	-	308	162146992	-	GDI1197	-	D-2-hydroxyacid dehydrogensase
1147	 69.58	0	1192106..1192792	-	228	162146993	-	GDI1198	-	putative 2-keto-4-pentenoate hydratase-like
1148	 64.82	0	1192946..1194247	-	433	162146994	-	GDI1199	-	putative sugar transport protein
1149	 65.07	0	1194369..1195373	-	334	162146995	-	GDI1200	-	oxidoreductase protein
1150	 69.65	0	1195687..1196223	-	178	162146996	-	GDI1201	-	hypothetical protein
1151	 67.25	0	1196243..1197442	+	399	162146997	idnD	GDI1202	-	L-idonate 5-dehydrogenase
1152	 66.27	0	1197535..1198035	-	166	162146998	-	GDI1203	-	hypothetical protein
1153	 55.86	-1	1198071..1198403	-	110	162146999	-	GDI1204	-	hypothetical protein
1154	 63.14	0	1198753..1199121	+	122	162147000	-	GDI1205	-	hypothetical protein
1155	 67.68	0	1199214..1199411	+	65	162147001	-	GDI1206	-	hypothetical protein
1156	 64.63	0	1199472..1199717	-	81	162147002	-	GDI1207	-	hypothetical protein
1157	 41.67	-2	1200056..1200175	-	39	162147003	-	GDI1208	-	hypothetical protein
1158	 66.26	0	1200174..1200905	+	243	162147004	-	GDI1209	-	hypothetical protein
1159	 65.53	0	1200955..1202097	+	380	162147005	-	GDI1210	-	hypothetical protein
1160	 67.40	0	1202107..1202787	-	226	162147006	-	GDI1211	-	hypothetical protein
1161	 64.62	0	1202915..1203793	-	292	162147007	-	GDI1212	-	putative aldose 1-epimerase
1162	 60.00	-1	1203848..1204297	-	149	162147008	-	GDI1213	-	hypothetical protein
1163	 69.24	0	1204294..1205031	-	245	162147009	-	GDI1214	-	putative hydrolase protein
1164	 69.77	0	1205034..1206095	-	353	162147010	hemE	GDI1215	-	uroporphyrinogen decarboxylase
1165	 65.21	0	1206434..1207189	+	251	162147011	-	GDI1216	-	putative septum formation inhibitor protein
1166	 73.53	+1	1207466..1210060	-	864	162147012	-	GDI1217	-	putative permease protein
1167	 71.69	0	1210057..1210833	-	258	162147013	-	GDI1218	-	putative ABC transporter, ATP-binding protein
1168	 71.09	0	1210892..1211524	+	210	162147014	-	GDI1219	-	putative GDSL-like lipase/acylhydrolase
1169	 63.01	0	1211586..1212104	+	172	162147015	-	GDI1220	-	hypothetical protein
1170	 56.90	-1	1212190..1213182	+	330	162147016	-	GDI1221	-	putative integrase
1171	 60.49	0	1213277..1213438	+	53	162147017	-	GDI1222	-	hypothetical protein
1172	 65.40	0	1213537..1215978	-	813	162147018	-	GDI1223	-	putative TonB-dependent receptor
1173	 59.51	-1	1216533..1217063	-	176	162147019	-	GDI1224	-	hypothetical protein
1174	 69.81	0	1217477..1218367	-	296	162147020	parB	GDI1225	-	putative chromosome partitioning protein parB
1175	 66.67	0	1218364..1219161	-	265	162147021	parA	GDI1226	-	putative chromosome partitioning protein parA
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.