IslandPath Analysis: Gluconacetobacter diazotrophicus PAl 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.22   STD DEV: 5.80
Gluconacetobacter diazotrophicus PAl 5, complete genome - 1..3944163
3778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
994	 65.96	0	1036903..1037328	-	141	162146840	-	GDI1022	-	hypothetical protein
995	 65.51	0	1037334..1039316	-	660	162146841	traG	GDI1023	-	putative conjugal transfer protein traG
996	 57.39	-1	1039474..1039764	-	96	162146842	-	GDI1024	-	hypothetical protein
997	 60.81	0	1039757..1040029	-	90	162146843	-	GDI1025	-	hypothetical protein
998	 64.84	0	1040085..1040357	-	90	162146844	-	GDI1026	-	putative transcriptional regulator protein
999	 67.75	0	1040448..1042202	-	584	162146845	-	GDI1027	-	hypothetical protein
1000	 63.98	0	1042476..1042922	+	148	162146846	-	GDI1028	-	hypothetical protein
1001	 57.27	-1	1043482..1044354	-	290	162146847	-	GDI1030	-	hypothetical protein
1002	 74.72	+1	1044640..1046364	-	574	162146848	recJ	GDI1031	-	putative single-stranded-DNA-specific exonuclease recJ
1003	 69.28	0	1046418..1047563	-	381	162146849	glpX	GDI1032	-	fructose 1,6-bisphosphatase II
1004	 73.30	+1	1047612..1048967	-	451	162146850	-	GDI1033	-	homoserine dehydrogenase
1005	 68.63	0	1049029..1050252	-	407	162146851	-	GDI1034	-	aminotransferase
1006	 78.74	+2	1050440..1051516	-	358	162146852	-	GDI1035	-	hypothetical protein
1007	 65.93	0	1051735..1052409	+	224	162146853	clpP	GDI1036	-	ATP-dependent Clp protease proteolytic subunit
1008	 64.85	0	1052519..1053511	+	330	162146854	-	GDI1037	-	hypothetical protein
1009	 66.44	0	1053508..1054371	+	287	162146855	-	GDI1038	-	hypothetical protein
1010	 58.53	-1	1054457..1054714	+	85	162146856	-	GDI1039	-	hypothetical protein
1011	 68.02	0	1054761..1055867	+	368	162146857	-	GDI1040	-	hypothetical protein
1012	 65.35	0	1055978..1057795	+	605	162146858	-	GDI1041	-	hypothetical protein
1013	 44.12	-2	1058195..1058398	-	67	162146859	-	GDI1042	-	hypothetical protein
1014	 62.58	0	1058482..1059387	-	301	162146860	-	GDI1043	-	putative integrase
1015	 64.44	0	1059387..1059701	-	104	162146861	-	GDI1044	-	putative transposase
1016	 59.33	-1	1059776..1060225	+	149	162146862	-	GDI1045	-	hypothetical protein
1017	 65.45	0	1060239..1060811	+	190	162146863	-	GDI1046	-	hypothetical protein
1018	 68.02	0	1060846..1062321	-	491	162146864	pucI	GDI1047	-	putative allantoin permease
1019	 58.68	-1	1062475..1062762	+	95	162146865	-	GDI1048	-	putative transposase
1020	 62.18	0	1063339..1063650	-	103	162146866	-	GDI1051	-	putative transposase
1021	 50.07	-2	1064362..1065072	+	236	162146867	-	GDI1053	-	putative peptidase
1022	 43.33	-2	1065116..1065265	-	49	162146868	-	GDI1054	-	hypothetical protein
1023	 56.14	-1	1065277..1065789	+	170	162146869	-	GDI1055	-	putative resolvase
1024	 54.95	-1	1065817..1066038	-	73	162146870	-	GDI1056	-	hypothetical protein
1025	 58.43	-1	1066586..1066852	+	88	162146871	-	GDI1057	-	putative transposase
1026	 64.87	0	1066876..1067598	+	240	162146872	-	GDI1058	-	putative integrase
1027	 63.42	0	1067690..1068151	+	153	162146873	-	GDI1059	-	putative transposase
1028	 57.17	-1	1069166..1069723	+	185	162146874	-	GDI1062	-	hypothetical protein
1029	 56.36	-1	1069773..1069937	-	54	162146875	-	GDI1063	-	hypothetical protein
1030	 64.44	0	1070114..1070428	+	104	162146876	-	GDI1064	-	putative transposase
1031	 61.17	0	1070425..1070697	+	90	162146877	-	GDI1065	-	putative transposase
1032	 63.21	0	1070697..1071332	+	211	162146878	-	GDI1066	-	putative integrase
1033	 56.31	-1	1071510..1071992	-	160	162146879	-	GDI1067	-	putative small heat shock protein
1034	 64.18	0	1072239..1072721	-	160	162146880	-	GDI1068	-	hypothetical protein
1035	 52.02	-2	1072824..1073144	+	106	162146881	-	GDI1069	-	hypothetical protein
1036	 59.88	-1	1073179..1073340	+	53	162146882	-	GDI1070	-	hypothetical protein
1037	 65.53	0	1073449..1073712	+	87	162146883	relB	GDI1071	-	bifunctional antitoxin/transcriptional repressor RelB
1038	 57.97	-1	1073705..1074049	+	114	162146884	relE	GDI1072	-	putative relE protein (antitoxin)
1039	 64.71	0	1074987..1075190	+	67	162146885	-	GDI1074	-	putative transposase
1040	 65.18	0	1075686..1076156	-	156	162146886	-	GDI1076	-	putative transposase
1041	 59.93	-1	1076208..1076474	+	88	162146887	-	GDI1077	-	putative transposase
1042	 63.97	0	1076510..1077325	+	271	162146888	-	GDI1078	-	putative integrase
1043	 56.49	-1	1077462..1078493	-	343	162146889	-	GDI1079	-	hypothetical protein
1044	 59.26	-1	1078545..1078706	+	53	162146890	-	GDI1080	-	hypothetical protein
1045	 60.85	0	1078703..1079803	-	366	162146891	-	GDI1081	-	putative aminotransferase
1046	 53.33	-2	1082640..1082774	-	44	162146892	-	GDI1085	-	hypothetical protein
1047	 48.48	-2	1082997..1083392	+	131	162146893	-	GDI1086	-	hypothetical protein
1048	 49.69	-2	1083389..1085179	+	596	162146894	-	GDI1087	-	hypothetical protein
1049	 49.10	-2	1085172..1086173	+	333	162146895	-	GDI1088	-	hypothetical protein
1050	 61.29	0	1087982..1089004	+	340	162146896	-	GDI1091	-	putative transposase
1051	 56.17	-1	1089735..1089896	+	53	162146897	-	GDI1093	-	hypothetical protein
1052	 62.79	0	1091452..1092354	-	300	162146898	-	GDI1096	-	putative integrase
1053	 59.75	-1	1092486..1092890	+	134	162146899	-	GDI1097	-	hypothetical protein
1054	 59.35	-1	1092944..1093408	+	154	162146900	-	GDI1098	-	putative transposase
1055	 64.92	0	1093458..1094144	+	228	162146901	-	GDI1099	-	putative transposase
1056	 61.78	0	1094406..1095203	-	265	162146902	-	GDI1100	-	putative transposase
1057	 65.86	0	1096109..1097095	+	328	162146903	trbG	GDI1102	-	putative conjugal transfer protein trbG/VirB9
1058	 67.10	0	1097092..1098252	+	386	162146904	trbI	GDI1103	-	putative conjugal transfer protein trbI/VirB10
1059	 60.16	-1	1098249..1098494	+	81	162146905	-	GDI1104	-	hypothetical protein
1060	 53.70	-2	1098466..1099344	-	292	162146906	-	GDI1105	-	putative HTH-type transcriptional regulator benM (Ben and cat opero transcriptional regulator)
1061	 61.65	0	1099453..1100928	-	491	162146907	-	GDI1106	-	putative outer membrane factor
1062	 58.62	-1	1101064..1101672	+	202	162146908	-	GDI1107	-	TetR family transcriptional regulator
1063	 65.94	0	1101757..1102857	+	366	162146909	-	GDI1108	-	putative efflux transporter protein
1064	 62.80	0	1102854..1105670	+	938	162146910	-	GDI1109	-	putative heavy metal efflux protein
1065	 62.89	0	1105717..1107015	+	432	162146911	-	GDI1110	-	putative 3-oxoacyl-[acyl-carrier-protein] synthase 2
1066	 59.78	-1	1107026..1107475	-	149	162146912	-	GDI1111	-	putative transcriptional regulator protein
1067	 60.10	-1	1107545..1108351	+	268	162146913	-	GDI1112	-	Short-chain dehydrogenase
1068	 54.55	-2	1108532..1108828	+	98	162146914	-	GDI1113	-	hypothetical protein
1069	 58.86	-1	1108774..1109580	-	268	162146915	-	GDI1114	-	putative transposase
1070	 56.93	-1	1109604..1109870	-	88	162146916	-	GDI1115	-	putative transposase
1071	 58.97	-1	1110642..1111109	-	155	162146917	-	GDI1117	-	hypothetical protein
1072	 63.16	0	1111949..1112062	+	37	162146918	-	GDI1120	-	hypothetical protein
1073	 64.32	0	1112050..1112475	-	141	162146919	ytfH	GDI1121	-	putative HTH-type transcriptional regulator
1074	 66.90	0	1112553..1113422	+	289	162146920	nmrA	GDI1122	-	putative transcriptional regulator
1075	 60.51	0	1114974..1115168	-	64	162146921	-	GDI1125	-	hypothetical protein
1076	 60.18	-1	1116022..1117161	+	379	162146922	-	GDI1127	-	putative transposase
1077	 63.47	0	1117437..1117967	+	176	162146923	-	GDI1128	-	hypothetical protein
1078	 67.48	0	1118077..1121403	-	1108	162146924	mdtC	GDI1129	-	puitative multidrug resistance protein mdtC
1079	 69.86	0	1121432..1122685	-	417	162146925	-	GDI1130	-	putative purine-cytosine permease
1080	 73.93	+1	1122841..1123680	-	279	162146926	-	GDI1131	-	putative short-chain dehydrogenase
1081	 71.14	0	1123768..1124460	+	230	162146927	-	GDI1132	-	guanylate kinase
1082	 72.10	+1	1124467..1125921	+	484	162146928	hldE	GDI1133	-	putative bifunctional protein HldE kinase
1083	 71.97	0	1125918..1127123	+	401	162146929	pmi	GDI1134	-	putative mannose-6-phosphate isomerase
1084	 67.33	0	1127201..1128715	+	504	162146930	-	GDI1135	-	replicative DNA helicase
1085	 73.59	+1	1128733..1129353	-	206	162146931	-	GDI1136	-	hypothetical protein
1086	 71.63	0	1129350..1130759	-	469	162146932	radA	GDI1137	-	DNA repair protein RadA
1087	 68.56	0	1130814..1131605	-	263	162146933	-	GDI1138	-	putative ABC transport
1088	 68.19	0	1131602..1132387	-	261	162146934	-	GDI1139	-	hypothetical protein
1089	 69.18	0	1132788..1134101	+	437	162146935	-	GDI1140	-	putative UDP-glucose 6-dehydrogenase
1090	 69.72	0	1134105..1135349	-	414	162146936	-	GDI1141	-	putative bicyclomycin resistance protein
1091	 72.41	+1	1135510..1136136	-	208	162146937	-	GDI1142	-	hypothetical protein
1092	 72.79	+1	1136296..1136997	+	233	162146938	tetR	GDI1143	-	TetR family transcriptional regulator
1093	 66.36	0	1136945..1139221	-	758	162146939	fdhH	GDI1144	-	formate dehydrogenase alpha subunit
66.22	MEAN

5.80	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.