IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
944	 63.62	0	1023807..1024397	-	196	39996054	-	GSU0951	-	TetR family transcriptional regulator
945	 55.53	0	1024618..1025910	+	430	39996055	-	GSU0952	-	GGDEF domain-containing protein
946	 54.31	-1	1026184..1026774	-	196	39996056	-	GSU0953	-	hypothetical protein
947	 55.76	0	1027076..1028056	-	326	39996057	-	GSU0954	-	hypothetical protein
948	 60.84	0	1029182..1030486	+	434	39996058	-	GSU0955	-	group II intron, maturase
949	 33.03	-2	1031005..1031670	-	221	39996059	-	GSU0956	-	hypothetical protein
950	 51.03	-1	1031690..1032808	-	372	39996060	-	GSU0957	-	ISGsu1, transposase
951	 52.91	-1	1032982..1033170	-	62	39996061	-	GSU0958	-	putative lipoprotein
952	 47.15	-2	1033287..1034075	-	262	39996062	-	GSU0959	-	hypothetical protein
953	 48.48	-2	1034351..1034449	+	32	39996063	-	GSU0960	-	hypothetical protein
954	 51.77	-1	1034609..1035655	-	348	39996064	-	GSU0961	-	ISGsu4, transposase
955	 61.99	0	1036181..1038148	+	655	39996065	-	GSU0962	-	sensor histidine kinase
956	 62.11	0	1038168..1039571	+	467	39996066	-	GSU0963	-	sigma-54 dependent DNA-binding response regulator
957	 53.19	-1	1040042..1040323	-	93	39996067	-	GSU0965	-	hypothetical protein
958	 55.21	-1	1040081..1040272	+	63	39996068	-	GSU0964	-	hypothetical protein
959	 63.89	0	1040397..1040648	+	83	39996069	-	GSU0966	-	hypothetical protein
960	 61.06	0	1040661..1041713	+	350	39996070	-	GSU0967	-	hypothetical protein
961	 65.21	0	1041859..1043229	+	456	39996071	-	GSU0968	-	hypothetical protein
962	 62.75	0	1043393..1044745	+	450	39996072	ctpA-1	GSU0969	-	carboxy-terminal processing protease
963	 61.69	0	1044984..1047935	+	983	39996073	-	GSU0970	-	hypothetical protein
964	 59.57	0	1047989..1048312	-	107	39996074	-	GSU0971	-	peptidyl-tRNA hydrolase domain-containing protein
965	 66.35	+1	1048581..1050812	+	743	39996075	-	GSU0972	-	AAA family ATPase
966	 65.66	0	1050826..1051422	+	198	39996076	-	GSU0973	-	hypothetical protein
967	 69.49	+1	1051419..1052267	+	282	39996077	-	GSU0974	-	hypothetical protein
968	 66.82	+1	1052346..1054328	+	660	39996078	-	GSU0975	-	phage tail sheath protein, putative
969	 59.59	0	1054369..1054806	+	145	39996079	-	GSU0976	-	hypothetical protein
970	 64.19	0	1054829..1055191	+	120	39996080	-	GSU0977	-	hypothetical protein
971	 63.64	0	1055269..1055367	+	32	39996081	-	GSU0978	-	hypothetical protein
972	 61.90	0	1055421..1055861	+	146	39996082	-	GSU0979	-	hypothetical protein
973	 68.51	+1	1055865..1057055	+	396	39996083	-	GSU0980	-	hypothetical protein
974	 66.02	0	1057071..1057688	+	205	39996084	-	GSU0981	-	hypothetical protein
975	 66.48	+1	1057692..1058780	+	362	39996085	-	GSU0982	-	hypothetical protein
976	 63.62	0	1058767..1059423	+	218	39996086	-	GSU0983	-	hypothetical protein
977	 67.65	+1	1059447..1059548	+	33	39996087	-	GSU0984	-	hypothetical protein
978	 71.38	+1	1059655..1059951	+	98	39996088	-	GSU0985	-	hypothetical protein
979	 62.69	0	1059962..1060363	+	133	39996089	-	GSU0986	-	tail lysozyme, putative
980	 69.17	+1	1060383..1063742	+	1119	39996090	-	GSU0987	-	hypothetical protein
981	 67.85	+1	1063766..1065799	+	677	39996091	-	GSU0988	-	hypothetical protein
982	 66.93	+1	1065932..1067824	+	630	39996092	-	GSU0989	-	NHL repeat-containing protein
983	 64.55	0	1067946..1069832	+	628	39996093	-	GSU0990	-	hypothetical protein
984	 65.17	0	1069829..1071094	+	421	39996094	-	GSU0991	-	glycosyl transferase, group 1 family protein
985	 62.66	0	1071166..1074108	+	980	39996095	-	GSU0992	-	hypothetical protein
986	 64.07	0	1074122..1074544	-	140	39996096	-	GSU0993	-	hypothetical protein
987	 62.79	0	1074639..1076264	-	541	39996097	fumB	GSU0994	-	fumarate hydratase, class I
988	 47.76	-2	1076356..1076556	+	66	39996098	-	GSU0995	-	hypothetical protein
989	 57.22	0	1076650..1076829	+	59	39996099	-	GSU0996	-	hypothetical protein
990	 66.79	+1	1076875..1077690	-	271	39996100	mutM	GSU0997	-	formamidopyrimidine-DNA glycosylase
991	 61.42	0	1077822..1079192	+	456	39996101	dnaB	GSU0998	-	replicative DNA helicase
992	 60.12	0	1079182..1079991	+	269	39996102	-	GSU0999	-	UDP-N-acetylglucosamine acyltransferase
993	 64.26	0	1079972..1081384	+	470	39996103	-	GSU1000	-	hypothetical protein
994	 58.07	0	1081683..1082066	+	127	39996104	-	GSU1001	-	hypothetical protein
995	 60.82	0	1082223..1082786	-	187	39996105	-	GSU1002	-	isochorismatase family protein
996	 58.92	0	1082803..1084248	-	481	39996106	ntrC	GSU1003	-	nitrogen regulation protein NR(I)
997	 62.73	0	1084304..1085395	-	363	39996107	-	GSU1004	-	sensory box histidine kinase
998	 65.24	0	1085392..1086369	-	325	39996108	-	GSU1005	-	dihydrouridine synthase family protein
999	 62.25	0	1086563..1086811	+	82	39996109	-	GSU1006	-	hypothetical protein
1000	 63.16	0	1086843..1088495	-	550	39996110	-	GSU1007	-	GAF domain/HD domain-containing protein
1001	 60.96	0	1088641..1089411	+	256	39996111	fabI	GSU1008	-	enoyl-(acyl-carrier-protein) reductase
1002	 64.33	0	1089471..1091138	+	555	39996112	-	GSU1009	-	GTP-binding protein
1003	 60.03	0	1091283..1092803	+	506	39996113	-	GSU1010	-	Slt family transglycosylase
1004	 58.57	0	1092852..1093580	+	242	39996114	-	GSU1011	-	hypothetical protein
1005	 60.74	0	1093676..1094890	+	404	39996115	-	GSU1012	-	hypothetical protein
1006	 57.01	0	1094975..1095844	+	289	39996116	-	GSU1013	-	chemotaxis MotB protein, putative
1007	 63.61	0	1095857..1096576	+	239	39996117	-	GSU1014	-	smr domain-containing protein
1008	 61.70	0	1096607..1097029	+	140	39996118	-	GSU1015	-	hypothetical protein
1009	 62.77	0	1097041..1098681	+	546	39996119	-	GSU1016	-	Trk family potassium uptake protein
1010	 62.19	0	1098815..1099372	+	185	39996120	-	GSU1017	-	hypoxanthine-guanine phosphoribosyltransferase
1011	 59.78	0	1099430..1099981	-	183	39996121	-	GSU1018	-	hypothetical protein
1012	 60.68	0	1100288..1101589	+	433	39996122	-	GSU1019	-	xanthine/uracil permease family protein
1013	 65.19	0	1101535..1102209	+	224	39996123	-	GSU1020	-	hypothetical protein
1014	 63.76	0	1101667..1102320	-	217	39996124	-	GSU1021	-	hypothetical protein
1015	 51.61	-1	1102317..1102409	-	30	39996125	-	GSU1022	-	hypothetical protein
1016	 62.75	0	1102492..1103997	+	501	39996126	glgA-1	GSU1023	-	glycogen synthase
1017	 60.57	0	1104057..1104335	-	92	39996127	cyd-4	GSU1024	-	cytochrome c3
1018	 58.71	0	1104518..1105120	-	200	39996128	-	GSU1025	-	hypothetical protein
1019	 61.05	0	1105190..1105723	-	177	39996129	-	GSU1026	-	hypothetical protein
1020	 64.86	0	1105733..1106617	-	294	39996130	-	GSU1027	-	glycosy hydrolase family protein
1021	 67.05	+1	1106605..1107639	-	344	39996131	-	GSU1028	-	peptidylarginine deiminase-related protein
1022	 61.82	0	1107913..1109562	+	549	39996132	-	GSU1029	-	methyl-accepting chemotaxis protein
1023	 62.36	0	1109751..1111400	+	549	39996133	-	GSU1030	-	methyl-accepting chemotaxis protein
1024	 51.06	-1	1111462..1111602	+	46	39996134	-	GSU1031	-	hypothetical protein
1025	 64.50	0	1111658..1113595	+	645	39996135	-	GSU1032	-	methyl-accepting chemotaxis protein
1026	 64.11	0	1113816..1115417	+	533	39996136	-	GSU1033	-	methyl-accepting chemotaxis protein
1027	 64.91	0	1117662..1119311	+	549	39996137	-	GSU1035	-	methyl-accepting chemotaxis protein
1028	 62.76	0	1119359..1121098	-	579	39996138	-	GSU1036	-	sensor histidine kinase
1029	 61.50	0	1121523..1123922	+	799	39996139	-	GSU1037	-	sensory box/response regulator
1030	 62.71	0	1124101..1125642	+	513	39996140	-	GSU1038	-	sensory box histidine kinase/response regulator
1031	 63.32	0	1125639..1127339	+	566	39996141	-	GSU1039	-	sigma-54 dependent DNA-binding response regulator
1032	 38.10	-2	1127452..1127556	-	34	39996142	-	GSU1040	-	hypothetical protein
1033	 62.05	0	1127555..1129180	+	541	39996143	-	GSU1041	-	methyl-accepting chemotaxis protein
1034	 60.25	0	1129240..1129644	+	134	39996144	-	GSU1042	-	hypothetical protein
1035	 60.46	0	1129626..1131929	-	767	39996145	-	GSU1043	-	sensory box histidine kinase
1036	 65.82	0	1132163..1133107	+	314	39996146	-	GSU1044	-	mutT/nudix family protein
1037	 64.40	0	1133170..1133610	+	146	39996147	-	GSU1045	-	hypothetical protein
1038	 64.86	0	1133624..1134508	+	294	39996148	-	GSU1046	-	hypothetical protein
1039	 69.44	+1	1134505..1135587	+	360	39996149	-	GSU1047	-	hypothetical protein
1040	 62.55	0	1135698..1136183	+	161	39996150	-	GSU1048	-	SecC motif-containing protein
1041	 63.29	0	1136252..1137259	-	335	39996151	-	GSU1049	-	ribonuclease Z
1042	 62.55	0	1137432..1138790	+	452	39996152	-	GSU1050	-	sensory box histidine kinase
1043	 59.94	0	1138970..1139311	+	113	39996153	-	GSU1051	-	hypothetical protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.