IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
890	 63.43	0	957967..960033	-	688	39996000	-	GSU0895	-	GAF domain/GGDEF domain-containing protein
891	 63.05	0	960231..961613	-	460	39996001	tldD	GSU0896	-	tldD protein
892	 64.61	0	962153..963028	+	291	39996002	-	GSU0897	-	hypothetical protein
893	 68.49	+1	963031..964842	+	603	39996003	recQ	GSU0898	-	ATP-dependent DNA helicase RecQ
894	 69.14	+1	964941..966554	+	537	39996004	-	GSU0899	-	hypothetical protein
895	 67.62	+1	966579..967520	-	313	39996005	-	GSU0900	-	hypothetical protein
896	 68.43	+1	967566..968357	+	263	39996006	-	GSU0901	-	hypothetical protein
897	 62.41	0	970535..971404	-	289	39996007	-	GSU0904	-	HD domain-containing protein
898	 66.37	+1	971391..971723	-	110	39996008	-	GSU0905	-	hypothetical protein
899	 55.22	-1	972287..972487	-	66	39996009	rpsU-1	GSU0906	-	30S ribosomal protein S21
900	 64.58	0	972677..973348	-	223	39996010	-	GSU0907	-	thiF family protein
901	 68.79	+1	973352..973633	-	93	39996011	-	GSU0908	-	moaD family protein
902	 67.24	+1	973639..974862	-	407	39996012	-	GSU0909	-	pyridine nucleotide-disulphide oxidoreductase family protein
903	 67.61	+1	974864..976669	-	601	39996013	-	GSU0910	-	aldehyde:ferredoxin oxidoreductase, tungsten-containing
904	 63.12	0	976671..977150	-	159	39996014	-	GSU0911	-	iron-sulfur cluster-binding protein
905	 66.12	+1	977215..977940	-	241	39996015	-	GSU0912	-	hypothetical protein
906	 66.93	+1	978103..980004	+	633	39996016	-	GSU0913	-	ABC transporter, ATP-binding protein
907	 68.75	+1	980161..981504	+	447	39996017	rhlE-2	GSU0914	-	ATP-dependent RNA helicase RhlE
908	 58.61	0	981656..982015	+	119	39996018	-	GSU0915	-	hypothetical protein
909	 63.12	0	982110..983294	-	394	39996019	-	GSU0916	-	methyl-accepting chemotaxis protein
910	 65.71	0	983484..983903	-	139	39996020	-	GSU0917	-	hypothetical protein
911	 66.00	0	983875..985077	-	400	39996021	-	GSU0918	-	S-adenosylmethionine synthetase
912	 60.36	0	985247..985468	-	73	39996022	-	GSU0919	-	hypothetical protein
913	 58.23	0	985467..985715	+	82	39996023	-	GSU0920	-	hypothetical protein
914	 63.82	0	986118..988544	-	808	39996024	-	GSU0921	-	ribonuclease, Rne/Rng family protein
915	 65.84	0	988816..990753	+	645	39996025	-	GSU0922	-	ABC transporter, ATP-binding protein
916	 65.45	0	990895..993201	+	768	39996026	loN-1	GSU0923	-	ATP-dependent protease La
917	 62.39	0	993208..993978	+	256	39996027	-	GSU0924	-	ABC transporter, permease protein, putative
918	 65.49	0	993989..994753	+	254	39996028	-	GSU0925	-	ABC transporter, ATP-binding protein
919	 65.00	0	994769..995851	+	360	39996029	-	GSU0926	-	mce-related protein
920	 64.39	0	995984..997390	+	468	39996030	-	GSU0927	-	M16 family peptidase
921	 63.88	0	997428..998864	+	478	39996031	-	GSU0928	-	M16 family peptidase
922	 57.41	0	998881..998988	+	35	39996032	-	GSU0929	-	hypothetical protein
923	 61.48	0	999205..1000476	+	423	39996033	-	GSU0930	-	sulfur transferase, putative, selenocysteine-containing
924	 66.89	+1	1000592..1001497	-	301	39996034	-	GSU0931	-	rhodanese-like domain-containing protein
925	 66.27	+1	1001567..1002817	-	416	39996035	uraA	GSU0932	-	uracil permease
926	 64.13	0	1002836..1003465	-	209	39996036	upp	GSU0933	-	uracil phosphoribosyltransferase
927	 62.86	0	1003658..1004287	+	209	39996037	-	GSU0934	-	hypothetical protein
928	 64.21	0	1004344..1005930	-	528	39996038	-	GSU0935	-	methyl-accepting chemotaxis protein, putative
929	 67.67	+1	1006181..1006876	+	231	39996039	-	GSU0936	-	glutamine amidotransferase, class I
930	 64.32	0	1007092..1008243	+	383	39996040	aksA	GSU0937	-	trans-homoaconitate synthase
931	 59.63	0	1008591..1009343	+	250	39996041	-	GSU0938	-	hypothetical protein
932	 56.64	0	1009395..1009733	+	112	39996042	-	GSU0939	-	nitrogen regulatory protein P-II, putative
933	 65.17	0	1009771..1011240	+	489	39996043	-	GSU0940	-	ammonium transporter
934	 61.31	0	1011471..1012217	+	248	39996044	-	GSU0941	-	sensor histidine kinase, putative
935	 65.27	0	1012334..1013119	+	261	39996045	suhB	GSU0942	-	inositol-1-monophosphatase
936	 63.13	0	1013207..1013941	+	244	39996046	-	GSU0943	-	hypothetical protein
937	 65.34	0	1014277..1015410	+	377	39996047	metC-1	GSU0944	-	cystathionine beta-lyase
938	 65.79	0	1015426..1016562	+	378	39996048	metC-2	GSU0945	-	cystathionine beta-lyase
939	 64.85	0	1016762..1019290	+	842	39996049	-	GSU0946	-	sensory box/GGDEF family protein
940	 64.96	0	1019379..1020083	-	234	39996050	-	GSU0947	-	ABC transporter, ATP-binding protein
941	 65.75	0	1020101..1021300	-	399	39996051	-	GSU0948	-	ABC transporter, permease protein, putative
942	 70.50	+1	1021297..1022469	-	390	39996052	-	GSU0949	-	RND family efflux transporter MFP subunit
943	 71.14	+1	1022466..1023740	-	424	39996053	-	GSU0950	-	outer membrane efflux protein
944	 63.62	0	1023807..1024397	-	196	39996054	-	GSU0951	-	TetR family transcriptional regulator
945	 55.53	0	1024618..1025910	+	430	39996055	-	GSU0952	-	GGDEF domain-containing protein
946	 54.31	-1	1026184..1026774	-	196	39996056	-	GSU0953	-	hypothetical protein
947	 55.76	0	1027076..1028056	-	326	39996057	-	GSU0954	-	hypothetical protein
948	 60.84	0	1029182..1030486	+	434	39996058	-	GSU0955	-	group II intron, maturase
949	 33.03	-2	1031005..1031670	-	221	39996059	-	GSU0956	-	hypothetical protein
950	 51.03	-1	1031690..1032808	-	372	39996060	-	GSU0957	-	ISGsu1, transposase
951	 52.91	-1	1032982..1033170	-	62	39996061	-	GSU0958	-	putative lipoprotein
952	 47.15	-2	1033287..1034075	-	262	39996062	-	GSU0959	-	hypothetical protein
953	 48.48	-2	1034351..1034449	+	32	39996063	-	GSU0960	-	hypothetical protein
954	 51.77	-1	1034609..1035655	-	348	39996064	-	GSU0961	-	ISGsu4, transposase
955	 61.99	0	1036181..1038148	+	655	39996065	-	GSU0962	-	sensor histidine kinase
956	 62.11	0	1038168..1039571	+	467	39996066	-	GSU0963	-	sigma-54 dependent DNA-binding response regulator
957	 53.19	-1	1040042..1040323	-	93	39996067	-	GSU0965	-	hypothetical protein
958	 55.21	-1	1040081..1040272	+	63	39996068	-	GSU0964	-	hypothetical protein
959	 63.89	0	1040397..1040648	+	83	39996069	-	GSU0966	-	hypothetical protein
960	 61.06	0	1040661..1041713	+	350	39996070	-	GSU0967	-	hypothetical protein
961	 65.21	0	1041859..1043229	+	456	39996071	-	GSU0968	-	hypothetical protein
962	 62.75	0	1043393..1044745	+	450	39996072	ctpA-1	GSU0969	-	carboxy-terminal processing protease
963	 61.69	0	1044984..1047935	+	983	39996073	-	GSU0970	-	hypothetical protein
964	 59.57	0	1047989..1048312	-	107	39996074	-	GSU0971	-	peptidyl-tRNA hydrolase domain-containing protein
965	 66.35	+1	1048581..1050812	+	743	39996075	-	GSU0972	-	AAA family ATPase
966	 65.66	0	1050826..1051422	+	198	39996076	-	GSU0973	-	hypothetical protein
967	 69.49	+1	1051419..1052267	+	282	39996077	-	GSU0974	-	hypothetical protein
968	 66.82	+1	1052346..1054328	+	660	39996078	-	GSU0975	-	phage tail sheath protein, putative
969	 59.59	0	1054369..1054806	+	145	39996079	-	GSU0976	-	hypothetical protein
970	 64.19	0	1054829..1055191	+	120	39996080	-	GSU0977	-	hypothetical protein
971	 63.64	0	1055269..1055367	+	32	39996081	-	GSU0978	-	hypothetical protein
972	 61.90	0	1055421..1055861	+	146	39996082	-	GSU0979	-	hypothetical protein
973	 68.51	+1	1055865..1057055	+	396	39996083	-	GSU0980	-	hypothetical protein
974	 66.02	0	1057071..1057688	+	205	39996084	-	GSU0981	-	hypothetical protein
975	 66.48	+1	1057692..1058780	+	362	39996085	-	GSU0982	-	hypothetical protein
976	 63.62	0	1058767..1059423	+	218	39996086	-	GSU0983	-	hypothetical protein
977	 67.65	+1	1059447..1059548	+	33	39996087	-	GSU0984	-	hypothetical protein
978	 71.38	+1	1059655..1059951	+	98	39996088	-	GSU0985	-	hypothetical protein
979	 62.69	0	1059962..1060363	+	133	39996089	-	GSU0986	-	tail lysozyme, putative
980	 69.17	+1	1060383..1063742	+	1119	39996090	-	GSU0987	-	hypothetical protein
981	 67.85	+1	1063766..1065799	+	677	39996091	-	GSU0988	-	hypothetical protein
982	 66.93	+1	1065932..1067824	+	630	39996092	-	GSU0989	-	NHL repeat-containing protein
983	 64.55	0	1067946..1069832	+	628	39996093	-	GSU0990	-	hypothetical protein
984	 65.17	0	1069829..1071094	+	421	39996094	-	GSU0991	-	glycosyl transferase, group 1 family protein
985	 62.66	0	1071166..1074108	+	980	39996095	-	GSU0992	-	hypothetical protein
986	 64.07	0	1074122..1074544	-	140	39996096	-	GSU0993	-	hypothetical protein
987	 62.79	0	1074639..1076264	-	541	39996097	fumB	GSU0994	-	fumarate hydratase, class I
988	 47.76	-2	1076356..1076556	+	66	39996098	-	GSU0995	-	hypothetical protein
989	 57.22	0	1076650..1076829	+	59	39996099	-	GSU0996	-	hypothetical protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.