IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
551	 49.63	-2	587652..589013	+	453	39995661	-	GSU0554	-	hypothetical protein
552	 56.20	0	589039..589401	+	120	39995662	-	GSU0555	-	ISGsu7, transposase OrfA
553	 56.79	0	589398..590288	+	296	39995663	-	GSU0556	-	ISGsu7, transposase OrfB
554	 47.46	-2	590343..590519	+	58	39995664	-	GSU0557	-	hypothetical protein
555	 41.20	-2	590661..590927	-	88	39995665	-	GSU0558	-	hypothetical protein
556	 55.34	0	590955..592040	+	361	39995666	-	GSU0559	-	ISGsu2, transposase
557	 42.74	-2	592166..592282	+	38	39995667	-	GSU0560	-	hypothetical protein
558	 39.79	-2	592429..594162	+	577	39995668	-	GSU0561	-	hypothetical protein
559	 54.77	-1	594226..594822	+	198	39995669	-	GSU0562	-	hypothetical protein
560	 50.39	-1	595014..595394	+	126	39995670	-	GSU0563	-	hypothetical protein
561	 43.38	-2	595484..596707	+	407	39995671	-	GSU0564	-	hypothetical protein
562	 62.50	0	596737..596832	-	31	39995672	-	GSU0565	-	hypothetical protein
563	 60.32	0	597066..597317	+	83	39995673	-	GSU0566	-	glutaredoxin family protein
564	 65.97	0	597360..597935	+	191	39995674	tag	GSU0567	-	DNA-3-methyladenine glycosylase I
565	 66.92	+1	597932..598333	+	133	39995675	-	GSU0568	-	hypothetical protein
566	 65.57	0	598373..598921	+	182	39995676	-	GSU0569	-	isochorismatase family protein
567	 69.97	+1	598962..599567	+	201	39995677	-	GSU0570	-	hypothetical protein
568	 69.36	+1	599582..600064	+	160	39995678	folA	GSU0571	-	dihydrofolate reductase
569	 68.43	+1	600586..601209	+	207	39995679	-	GSU0572	-	HAD family hydrolase
570	 71.90	+2	601211..602203	+	330	39995680	-	GSU0573	-	alcohol dehydrogenase, zinc-containing
571	 70.23	+1	602546..603472	+	308	39995681	-	GSU0574	-	hypothetical protein
572	 66.04	0	603597..605525	+	642	39995682	cstA	GSU0575	-	carbon starvation protein A
573	 64.41	0	605795..606238	+	147	39995683	-	GSU0576	-	hypothetical protein
574	 70.08	+1	606305..607036	+	243	39995684	recO	GSU0577	-	DNA repair protein RecO
575	 62.46	0	607314..608192	+	292	39995685	glyQ	GSU0578	-	glycyl-tRNA synthetase subunit alpha
576	 66.28	+1	608194..610257	+	687	39995686	glyS	GSU0579	-	glycyl-tRNA synthetase, beta subunit
577	 63.33	0	610378..613044	+	888	39995687	ppdK	GSU0580	-	pyruvate phosphate dikinase
578	 53.73	-1	613202..613402	+	66	39995688	-	GSU0581	-	cold-shock domain-contain protein
579	 61.84	0	613603..615693	+	696	39995689	-	GSU0582	-	methyl-accepting chemotaxis protein
580	 62.28	0	615706..617322	-	538	39995690	-	GSU0583	-	methyl-accepting chemotaxis protein
581	 61.89	0	617517..618668	-	383	39995691	-	GSU0584	-	hypothetical protein
582	 62.10	0	619169..619825	-	218	39995692	-	GSU0585	-	fumarylacetoacetate hydrolase family protein
583	 64.58	0	619853..620812	-	319	39995693	-	GSU0586	-	radical SAM family protein
584	 68.22	+1	620816..621457	-	213	39995694	thiE	GSU0587	-	thiamine-phosphate pyrophosphorylase
585	 60.79	0	621450..622232	-	260	39995695	thiG	GSU0588	-	thiazole synthase
586	 57.07	0	622304..622501	-	65	39995696	-	GSU0589	-	hypothetical protein
587	 58.57	0	622832..623362	-	176	39995697	-	GSU0590	-	hypothetical protein
588	 61.03	0	623398..624249	-	283	39995698	-	GSU0591	-	cytochrome c family protein
589	 56.97	0	624366..625355	-	329	39995699	-	GSU0592	-	cytochrome c family protein
590	 54.49	-1	625543..626199	-	218	39995700	-	GSU0593	-	hypothetical protein
591	 58.67	0	626203..627252	-	349	39995701	-	GSU0594	-	cytochrome c family protein
592	 57.83	0	627368..627616	+	82	39995702	-	GSU0595	-	hypothetical protein
593	 55.98	0	627650..628042	-	130	39995703	-	GSU0596	-	response regulator
594	 57.20	0	628093..628335	-	80	39995704	-	GSU0597	-	hypothetical protein
595	 56.97	0	628853..630265	+	470	39995705	-	GSU0598	-	sigma-54 dependent DNA-binding response regulator
596	 57.25	0	630362..631912	-	516	39995706	-	GSU0599	-	sensor histidine kinase
597	 56.57	0	631911..632009	+	32	39995707	-	GSU0600	-	hypothetical protein
598	 64.15	0	632134..635715	+	1193	39995708	-	GSU0601	-	alpha amylase family protein
599	 59.22	0	635752..636516	+	254	39995709	-	GSU0602	-	hypothetical protein
600	 59.69	0	636486..637403	-	305	39995710	-	GSU0603	-	hypothetical protein
601	 63.08	0	637928..639238	-	436	39995711	thiC-1	GSU0604	-	thiamine biosynthesis protein ThiC
602	 66.67	+1	639288..640760	-	490	39995712	-	GSU0605	-	thiamine-phosphate pyrophosphorylase/phosphomethylpyrimidine kinase
603	 65.36	0	641051..642199	+	382	39995713	alr	GSU0606	-	alanine racemase
604	 69.17	+1	642216..643253	+	345	39995714	selD	GSU0607	-	selenide, water dikinase, selenocysteine-containing
605	 65.89	0	643240..644520	+	426	39995715	-	GSU0608	-	hypothetical protein
606	 64.62	0	644573..646138	+	521	39995716	purH	GSU0609	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
607	 63.44	0	646167..647438	+	423	39995717	purD	GSU0610	-	phosphoribosylamine--glycine ligase
608	 63.73	0	647453..647962	+	169	39995718	purE-1	GSU0611	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
609	 57.61	0	648095..648370	+	91	39995719	ppcA	GSU0612	-	cytochrome c3
610	 57.44	0	648569..649933	+	454	39995720	-	GSU0613	-	ResB-like family protein
611	 58.10	0	649955..650806	+	283	39995721	-	GSU0614	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
612	 63.18	0	650845..651933	+	362	39995722	-	GSU0615	-	cytochrome c family protein
613	 60.22	0	651948..652940	+	330	39995723	-	GSU0616	-	cytochrome c family protein
614	 58.10	0	652996..654081	+	361	39995724	-	GSU0617	-	NHL repeat-containing protein
615	 62.52	0	654657..655355	+	232	39995725	-	GSU0618	-	cytochrome c family protein
616	 59.85	0	655534..657777	+	747	39995726	-	GSU0619	-	hypothetical protein
617	 61.54	0	656865..657215	-	116	39995727	-	GSU0620	-	hypothetical protein
618	 66.77	+1	657888..658853	+	321	39995728	-	GSU0621	-	hypothetical protein
619	 62.80	0	658850..660349	+	499	39995729	-	GSU0622	-	hypothetical protein
620	 61.83	0	660358..661308	+	316	39995730	-	GSU0623	-	glycosyl transferase, group 2 family protein
621	 66.23	+1	661333..662484	+	383	39995731	-	GSU0624	-	glycosyl transferase, group 1 family protein
622	 63.38	0	662525..663163	+	212	39995732	-	GSU0625	-	hypothetical protein
623	 63.81	0	663160..664209	+	349	39995733	gmd	GSU0626	-	GDP-mannose 4,6-dehydratase
624	 62.75	0	664202..665146	+	314	39995734	-	GSU0627	-	GDP-fucose synthetase
625	 60.35	0	665182..665988	+	268	39995735	-	GSU0628	-	hypothetical protein
626	 59.19	0	665985..667388	+	467	39995736	-	GSU0629	-	lipopolysaccharide/O-antigen transporter, putative
627	 61.83	0	667388..668110	+	240	39995737	-	GSU0630	-	hypothetical protein
628	 60.46	0	668122..669087	+	321	39995738	-	GSU0631	-	glycosyl transferase, group 2 family protein
629	 59.33	0	669113..669916	+	267	39995739	-	GSU0632	-	hypothetical protein
630	 64.12	0	669913..670776	+	287	39995740	-	GSU0633	-	glycosyl transferase, group 2 family protein
631	 67.59	+1	670781..671977	+	398	39995741	-	GSU0634	-	glycosyl transferase, group 1 family protein
632	 63.25	0	672007..674409	+	800	39995742	-	GSU0636	-	hypothetical protein
633	 62.42	0	674412..675188	+	258	39995743	-	GSU0637	-	hypothetical protein
634	 64.38	0	675167..675646	-	159	39995744	-	GSU0638	-	hypothetical protein
635	 53.88	-1	675639..675896	-	85	39995745	-	GSU0639	-	hypothetical protein
636	 60.00	0	675977..676231	+	84	39995746	-	GSU0640	-	hypothetical protein
637	 56.57	0	676252..676350	+	32	39995747	-	GSU0641	-	hypothetical protein
638	 59.75	0	676434..677792	+	452	39995748	ffH	GSU0642	-	signal recognition particle protein
639	 55.21	-1	677853..678140	+	95	39995749	rpsP	GSU0643	-	30S ribosomal protein S16
640	 53.68	-1	678193..678423	+	76	39995750	-	GSU0644	-	KH domain-containing protein
641	 57.03	0	678444..678962	+	172	39995751	rimM	GSU0645	-	16S rRNA processing protein RimM
642	 60.30	0	678959..679696	+	245	39995752	trmD	GSU0646	-	tRNA (guanine-N1)-methyltransferase
643	 58.12	0	679693..680277	+	194	39995753	-	GSU0647	-	hypothetical protein
644	 56.02	0	680352..680708	+	118	39995754	rplS	GSU0648	-	50S ribosomal protein L19
645	 62.08	0	680763..681416	+	217	39995755	rnhB	GSU0649	-	ribonuclease HII
646	 59.17	0	681407..681793	+	128	39995756	-	GSU0650	-	hypothetical protein
647	 58.10	0	681862..682713	+	283	39995757	-	GSU0651	-	carbon-nitrogen family hydrolase
648	 58.03	0	682713..683534	+	273	39995758	nadE	GSU0652	-	NAD synthetase
649	 56.56	0	683565..684425	+	286	39995759	-	GSU0653	-	tetrapyrrole methylase family protein
650	 56.09	0	689939..690685	-	248	39995760	-	GSU0654	-	thiF family protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.