IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
512	 57.89	0	549161..549616	+	151	39995622	-	GSU0515	-	universal stress protein
513	 59.09	0	549749..550540	-	263	39995623	-	GSU0516	-	hypothetical protein
514	 64.61	0	550546..551760	-	404	39995624	-	GSU0517	-	hypothetical protein
515	 65.35	0	551782..553305	-	507	39995625	-	GSU0518	-	sodium/solute symporter family protein
516	 58.72	0	553298..553624	-	108	39995626	-	GSU0519	-	hypothetical protein
517	 68.87	+1	553701..554927	-	408	39995627	-	GSU0520	-	hypothetical protein
518	 59.84	0	554931..555560	-	209	39995628	-	GSU0521	-	methyltransferase, putative
519	 63.89	0	555700..557031	+	443	39995629	rhlB	GSU0522	-	ATP-dependent RNA helicase RhlB
520	 67.67	+1	557100..558890	-	596	39995630	pabB	GSU0523	-	para-aminobenzoate synthase, component I
521	 65.82	0	558887..559594	-	235	39995631	-	GSU0524	-	hypothetical protein
522	 62.31	0	559887..560345	-	152	39995632	dtd	GSU0525	-	D-tyrosyl-tRNA deacylase
523	 69.35	+1	560342..560863	-	173	39995633	-	GSU0526	-	hypothetical protein
524	 64.42	0	561008..562702	-	564	39995634	-	GSU0527	-	TrkA domain-containing protein
525	 69.21	+1	562724..563548	-	274	39995635	-	GSU0528	-	nitroreductase family protein
526	 64.42	0	563536..564426	-	296	39995636	nfo	GSU0529	-	endonuclease IV
527	 65.48	0	564430..564849	-	139	39995637	-	GSU0530	-	HIT family protein
528	 62.43	0	564955..565803	-	282	39995638	dapF	GSU0531	-	diaminopimelate epimerase
529	 51.25	-1	565957..566235	-	92	39995639	-	GSU0532	-	hypothetical protein
530	 60.74	0	566260..566664	+	134	39995640	-	GSU0533	-	cytochrome c family protein, putative
531	 58.28	0	566814..567278	+	154	39995641	-	GSU0534	-	Rrf2 family protein
532	 65.04	0	567299..568222	+	307	39995642	cysK	GSU0535	-	cysteine synthase A
533	 64.69	0	568286..569095	+	269	39995643	-	GSU0536	-	hypothetical protein
534	 64.76	0	569343..571391	+	682	39995644	-	GSU0537	-	sensory box/GGDEF family protein
535	 60.14	0	571372..571815	-	147	39995645	-	GSU0538	-	HSP20 family protein
536	 51.41	-1	571962..572138	-	58	39995646	-	GSU0539	-	hypothetical protein
537	 60.48	0	572364..572573	+	69	39995647	-	GSU0540	-	hypothetical protein
538	 66.52	+1	572574..575249	+	891	39995648	polA	GSU0541	-	DNA polymerase I
539	 64.42	0	575439..576464	+	341	39995649	-	GSU0542	-	GGDEF domain-containing protein
540	 63.45	0	576489..576986	-	165	39995650	-	GSU0543	-	Slp family outer membrane lipoprotein
541	 65.08	0	577003..577632	-	209	39995651	-	GSU0544	-	hypothetical protein
542	 66.77	+1	577781..578707	+	308	39995652	-	GSU0545	-	hypothetical protein
543	 64.83	0	578710..579090	+	126	39995653	-	GSU0546	-	peptidyl-tRNA hydrolase domain-containing protein
544	 68.43	+1	579087..581465	+	792	39995654	-	GSU0547	-	MutS2 family protein
545	 64.82	0	581487..583001	-	504	39995655	-	GSU0548	-	radical SAM domain-containing protein
546	 69.16	+1	583123..583803	+	226	39995656	-	GSU0549	-	hypothetical protein
547	 56.41	0	583902..584057	-	51	39995657	-	GSU0550	-	hypothetical protein
548	 54.39	-1	584149..584490	+	113	39995658	-	GSU0551	-	hypothetical protein
549	 49.77	-2	584623..586161	+	512	39995659	-	GSU0552	-	hypothetical protein
550	 49.30	-2	586238..587659	+	473	39995660	-	GSU0553	-	hypothetical protein
551	 49.63	-2	587652..589013	+	453	39995661	-	GSU0554	-	hypothetical protein
552	 56.20	0	589039..589401	+	120	39995662	-	GSU0555	-	ISGsu7, transposase OrfA
553	 56.79	0	589398..590288	+	296	39995663	-	GSU0556	-	ISGsu7, transposase OrfB
554	 47.46	-2	590343..590519	+	58	39995664	-	GSU0557	-	hypothetical protein
555	 41.20	-2	590661..590927	-	88	39995665	-	GSU0558	-	hypothetical protein
556	 55.34	0	590955..592040	+	361	39995666	-	GSU0559	-	ISGsu2, transposase
557	 42.74	-2	592166..592282	+	38	39995667	-	GSU0560	-	hypothetical protein
558	 39.79	-2	592429..594162	+	577	39995668	-	GSU0561	-	hypothetical protein
559	 54.77	-1	594226..594822	+	198	39995669	-	GSU0562	-	hypothetical protein
560	 50.39	-1	595014..595394	+	126	39995670	-	GSU0563	-	hypothetical protein
561	 43.38	-2	595484..596707	+	407	39995671	-	GSU0564	-	hypothetical protein
562	 62.50	0	596737..596832	-	31	39995672	-	GSU0565	-	hypothetical protein
563	 60.32	0	597066..597317	+	83	39995673	-	GSU0566	-	glutaredoxin family protein
564	 65.97	0	597360..597935	+	191	39995674	tag	GSU0567	-	DNA-3-methyladenine glycosylase I
565	 66.92	+1	597932..598333	+	133	39995675	-	GSU0568	-	hypothetical protein
566	 65.57	0	598373..598921	+	182	39995676	-	GSU0569	-	isochorismatase family protein
567	 69.97	+1	598962..599567	+	201	39995677	-	GSU0570	-	hypothetical protein
568	 69.36	+1	599582..600064	+	160	39995678	folA	GSU0571	-	dihydrofolate reductase
569	 68.43	+1	600586..601209	+	207	39995679	-	GSU0572	-	HAD family hydrolase
570	 71.90	+2	601211..602203	+	330	39995680	-	GSU0573	-	alcohol dehydrogenase, zinc-containing
571	 70.23	+1	602546..603472	+	308	39995681	-	GSU0574	-	hypothetical protein
572	 66.04	0	603597..605525	+	642	39995682	cstA	GSU0575	-	carbon starvation protein A
573	 64.41	0	605795..606238	+	147	39995683	-	GSU0576	-	hypothetical protein
574	 70.08	+1	606305..607036	+	243	39995684	recO	GSU0577	-	DNA repair protein RecO
575	 62.46	0	607314..608192	+	292	39995685	glyQ	GSU0578	-	glycyl-tRNA synthetase subunit alpha
576	 66.28	+1	608194..610257	+	687	39995686	glyS	GSU0579	-	glycyl-tRNA synthetase, beta subunit
577	 63.33	0	610378..613044	+	888	39995687	ppdK	GSU0580	-	pyruvate phosphate dikinase
578	 53.73	-1	613202..613402	+	66	39995688	-	GSU0581	-	cold-shock domain-contain protein
579	 61.84	0	613603..615693	+	696	39995689	-	GSU0582	-	methyl-accepting chemotaxis protein
580	 62.28	0	615706..617322	-	538	39995690	-	GSU0583	-	methyl-accepting chemotaxis protein
581	 61.89	0	617517..618668	-	383	39995691	-	GSU0584	-	hypothetical protein
582	 62.10	0	619169..619825	-	218	39995692	-	GSU0585	-	fumarylacetoacetate hydrolase family protein
583	 64.58	0	619853..620812	-	319	39995693	-	GSU0586	-	radical SAM family protein
584	 68.22	+1	620816..621457	-	213	39995694	thiE	GSU0587	-	thiamine-phosphate pyrophosphorylase
585	 60.79	0	621450..622232	-	260	39995695	thiG	GSU0588	-	thiazole synthase
586	 57.07	0	622304..622501	-	65	39995696	-	GSU0589	-	hypothetical protein
587	 58.57	0	622832..623362	-	176	39995697	-	GSU0590	-	hypothetical protein
588	 61.03	0	623398..624249	-	283	39995698	-	GSU0591	-	cytochrome c family protein
589	 56.97	0	624366..625355	-	329	39995699	-	GSU0592	-	cytochrome c family protein
590	 54.49	-1	625543..626199	-	218	39995700	-	GSU0593	-	hypothetical protein
591	 58.67	0	626203..627252	-	349	39995701	-	GSU0594	-	cytochrome c family protein
592	 57.83	0	627368..627616	+	82	39995702	-	GSU0595	-	hypothetical protein
593	 55.98	0	627650..628042	-	130	39995703	-	GSU0596	-	response regulator
594	 57.20	0	628093..628335	-	80	39995704	-	GSU0597	-	hypothetical protein
595	 56.97	0	628853..630265	+	470	39995705	-	GSU0598	-	sigma-54 dependent DNA-binding response regulator
596	 57.25	0	630362..631912	-	516	39995706	-	GSU0599	-	sensor histidine kinase
597	 56.57	0	631911..632009	+	32	39995707	-	GSU0600	-	hypothetical protein
598	 64.15	0	632134..635715	+	1193	39995708	-	GSU0601	-	alpha amylase family protein
599	 59.22	0	635752..636516	+	254	39995709	-	GSU0602	-	hypothetical protein
600	 59.69	0	636486..637403	-	305	39995710	-	GSU0603	-	hypothetical protein
601	 63.08	0	637928..639238	-	436	39995711	thiC-1	GSU0604	-	thiamine biosynthesis protein ThiC
602	 66.67	+1	639288..640760	-	490	39995712	-	GSU0605	-	thiamine-phosphate pyrophosphorylase/phosphomethylpyrimidine kinase
603	 65.36	0	641051..642199	+	382	39995713	alr	GSU0606	-	alanine racemase
604	 69.17	+1	642216..643253	+	345	39995714	selD	GSU0607	-	selenide, water dikinase, selenocysteine-containing
605	 65.89	0	643240..644520	+	426	39995715	-	GSU0608	-	hypothetical protein
606	 64.62	0	644573..646138	+	521	39995716	purH	GSU0609	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
607	 63.44	0	646167..647438	+	423	39995717	purD	GSU0610	-	phosphoribosylamine--glycine ligase
608	 63.73	0	647453..647962	+	169	39995718	purE-1	GSU0611	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
609	 57.61	0	648095..648370	+	91	39995719	ppcA	GSU0612	-	cytochrome c3
610	 57.44	0	648569..649933	+	454	39995720	-	GSU0613	-	ResB-like family protein
611	 58.10	0	649955..650806	+	283	39995721	-	GSU0614	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.