IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
478	 60.89	0	512162..512386	+	74	39995588	-	GSU0480	-	NifU-like domain-containing protein
479	 57.21	0	512423..512623	+	66	39995589	-	GSU0481	-	hypothetical protein
480	 62.47	0	512758..513948	+	396	39995590	-	GSU0482	-	cardiolipin synthetase, putative
481	 62.32	0	514039..514752	+	237	39995591	-	GSU0483	-	exsB protein
482	 58.43	0	514818..515594	+	258	39995592	-	GSU0484	-	putative GTP cyclohydrolase
483	 62.74	0	515708..516445	+	245	39995593	-	GSU0485	-	hypothetical protein
484	 62.20	0	516396..517604	-	402	39995594	ilvA	GSU0486	-	threonine dehydratase
485	 61.75	0	517626..518621	-	331	39995595	-	GSU0487	-	cation efflux family protein
486	 62.78	0	518779..519729	+	316	39995596	trxB	GSU0488	-	thioredoxin reductase
487	 62.35	0	519735..521264	+	509	39995597	-	GSU0489	-	Mg chelatase-related protein
488	 60.09	0	521516..523111	+	531	39995598	-	GSU0490	-	acetyl-CoA hydrolase/transferase family protein
489	 64.45	0	523215..524567	-	450	39995599	rhlE-1	GSU0491	-	ATP-dependent RNA helicase RhlE
490	 63.50	0	524995..525879	-	294	39995600	-	GSU0492	-	phage integrase family site specific recombinase
491	 62.62	0	526070..527329	+	419	39995601	-	GSU0493	-	pyridine nucleotide-disulphide oxidoreductase family protein
492	 65.69	0	527317..528447	+	376	39995602	-	GSU0494	-	iron-sulfur cluster-binding protein
493	 61.01	0	528549..528707	+	52	39995603	-	GSU0495	-	hypothetical protein
494	 62.45	0	528747..529955	+	402	39995604	-	GSU0496	-	RND family efflux transporter MFP subunit
495	 59.65	0	531917..532087	+	56	39995605	-	GSU0498	-	hypothetical protein
496	 62.17	0	532095..532850	-	251	39995606	-	GSU0499	-	M23/M37 peptidase domain-containing protein
497	 60.82	0	533056..534852	+	598	39995607	typA	GSU0500	-	GTP-binding protein TypA
498	 57.52	0	534968..535732	+	254	39995608	-	GSU0501	-	putative lipoprotein
499	 63.98	0	535734..536105	+	123	39995609	-	GSU0502	-	putative lipoprotein
500	 61.23	0	536089..536511	+	140	39995610	-	GSU0503	-	crcB protein
501	 60.28	0	536521..536880	+	119	39995611	-	GSU0504	-	hypothetical protein
502	 61.18	0	536877..537386	+	169	39995612	-	GSU0505	-	rhodanese-like domain-containing protein
503	 57.31	0	537386..537802	+	138	39995613	-	GSU0506	-	methylamine utilization protein MauE, putative
504	 61.71	0	537876..538460	+	194	39995614	-	GSU0507	-	hypothetical protein
505	 59.24	0	538457..539479	+	340	39995615	-	GSU0508	-	hypothetical protein
506	 59.45	0	539537..542071	-	844	39995616	sfrA	GSU0509	-	Fe(III) reductase, alpha subunit
507	 60.62	0	542195..544213	-	672	39995617	sfrB	GSU0510	-	Fe(III) reductase, beta subunit
508	 58.42	0	544177..545607	+	476	39995618	-	GSU0511	-	hypothetical protein
509	 60.94	0	545697..547337	+	546	39995619	-	GSU0512	-	hypothetical protein
510	 63.97	0	547440..548033	+	197	39995620	-	GSU0513	-	dephospho-CoA kinase
511	 56.70	0	548065..548847	-	260	39995621	-	GSU0514	-	IclR family transcriptional regulator
512	 57.89	0	549161..549616	+	151	39995622	-	GSU0515	-	universal stress protein
513	 59.09	0	549749..550540	-	263	39995623	-	GSU0516	-	hypothetical protein
514	 64.61	0	550546..551760	-	404	39995624	-	GSU0517	-	hypothetical protein
515	 65.35	0	551782..553305	-	507	39995625	-	GSU0518	-	sodium/solute symporter family protein
516	 58.72	0	553298..553624	-	108	39995626	-	GSU0519	-	hypothetical protein
517	 68.87	+1	553701..554927	-	408	39995627	-	GSU0520	-	hypothetical protein
518	 59.84	0	554931..555560	-	209	39995628	-	GSU0521	-	methyltransferase, putative
519	 63.89	0	555700..557031	+	443	39995629	rhlB	GSU0522	-	ATP-dependent RNA helicase RhlB
520	 67.67	+1	557100..558890	-	596	39995630	pabB	GSU0523	-	para-aminobenzoate synthase, component I
521	 65.82	0	558887..559594	-	235	39995631	-	GSU0524	-	hypothetical protein
522	 62.31	0	559887..560345	-	152	39995632	dtd	GSU0525	-	D-tyrosyl-tRNA deacylase
523	 69.35	+1	560342..560863	-	173	39995633	-	GSU0526	-	hypothetical protein
524	 64.42	0	561008..562702	-	564	39995634	-	GSU0527	-	TrkA domain-containing protein
525	 69.21	+1	562724..563548	-	274	39995635	-	GSU0528	-	nitroreductase family protein
526	 64.42	0	563536..564426	-	296	39995636	nfo	GSU0529	-	endonuclease IV
527	 65.48	0	564430..564849	-	139	39995637	-	GSU0530	-	HIT family protein
528	 62.43	0	564955..565803	-	282	39995638	dapF	GSU0531	-	diaminopimelate epimerase
529	 51.25	-1	565957..566235	-	92	39995639	-	GSU0532	-	hypothetical protein
530	 60.74	0	566260..566664	+	134	39995640	-	GSU0533	-	cytochrome c family protein, putative
531	 58.28	0	566814..567278	+	154	39995641	-	GSU0534	-	Rrf2 family protein
532	 65.04	0	567299..568222	+	307	39995642	cysK	GSU0535	-	cysteine synthase A
533	 64.69	0	568286..569095	+	269	39995643	-	GSU0536	-	hypothetical protein
534	 64.76	0	569343..571391	+	682	39995644	-	GSU0537	-	sensory box/GGDEF family protein
535	 60.14	0	571372..571815	-	147	39995645	-	GSU0538	-	HSP20 family protein
536	 51.41	-1	571962..572138	-	58	39995646	-	GSU0539	-	hypothetical protein
537	 60.48	0	572364..572573	+	69	39995647	-	GSU0540	-	hypothetical protein
538	 66.52	+1	572574..575249	+	891	39995648	polA	GSU0541	-	DNA polymerase I
539	 64.42	0	575439..576464	+	341	39995649	-	GSU0542	-	GGDEF domain-containing protein
540	 63.45	0	576489..576986	-	165	39995650	-	GSU0543	-	Slp family outer membrane lipoprotein
541	 65.08	0	577003..577632	-	209	39995651	-	GSU0544	-	hypothetical protein
542	 66.77	+1	577781..578707	+	308	39995652	-	GSU0545	-	hypothetical protein
543	 64.83	0	578710..579090	+	126	39995653	-	GSU0546	-	peptidyl-tRNA hydrolase domain-containing protein
544	 68.43	+1	579087..581465	+	792	39995654	-	GSU0547	-	MutS2 family protein
545	 64.82	0	581487..583001	-	504	39995655	-	GSU0548	-	radical SAM domain-containing protein
546	 69.16	+1	583123..583803	+	226	39995656	-	GSU0549	-	hypothetical protein
547	 56.41	0	583902..584057	-	51	39995657	-	GSU0550	-	hypothetical protein
548	 54.39	-1	584149..584490	+	113	39995658	-	GSU0551	-	hypothetical protein
549	 49.77	-2	584623..586161	+	512	39995659	-	GSU0552	-	hypothetical protein
550	 49.30	-2	586238..587659	+	473	39995660	-	GSU0553	-	hypothetical protein
551	 49.63	-2	587652..589013	+	453	39995661	-	GSU0554	-	hypothetical protein
552	 56.20	0	589039..589401	+	120	39995662	-	GSU0555	-	ISGsu7, transposase OrfA
553	 56.79	0	589398..590288	+	296	39995663	-	GSU0556	-	ISGsu7, transposase OrfB
554	 47.46	-2	590343..590519	+	58	39995664	-	GSU0557	-	hypothetical protein
555	 41.20	-2	590661..590927	-	88	39995665	-	GSU0558	-	hypothetical protein
556	 55.34	0	590955..592040	+	361	39995666	-	GSU0559	-	ISGsu2, transposase
557	 42.74	-2	592166..592282	+	38	39995667	-	GSU0560	-	hypothetical protein
558	 39.79	-2	592429..594162	+	577	39995668	-	GSU0561	-	hypothetical protein
559	 54.77	-1	594226..594822	+	198	39995669	-	GSU0562	-	hypothetical protein
560	 50.39	-1	595014..595394	+	126	39995670	-	GSU0563	-	hypothetical protein
561	 43.38	-2	595484..596707	+	407	39995671	-	GSU0564	-	hypothetical protein
562	 62.50	0	596737..596832	-	31	39995672	-	GSU0565	-	hypothetical protein
563	 60.32	0	597066..597317	+	83	39995673	-	GSU0566	-	glutaredoxin family protein
564	 65.97	0	597360..597935	+	191	39995674	tag	GSU0567	-	DNA-3-methyladenine glycosylase I
565	 66.92	+1	597932..598333	+	133	39995675	-	GSU0568	-	hypothetical protein
566	 65.57	0	598373..598921	+	182	39995676	-	GSU0569	-	isochorismatase family protein
567	 69.97	+1	598962..599567	+	201	39995677	-	GSU0570	-	hypothetical protein
568	 69.36	+1	599582..600064	+	160	39995678	folA	GSU0571	-	dihydrofolate reductase
569	 68.43	+1	600586..601209	+	207	39995679	-	GSU0572	-	HAD family hydrolase
570	 71.90	+2	601211..602203	+	330	39995680	-	GSU0573	-	alcohol dehydrogenase, zinc-containing
571	 70.23	+1	602546..603472	+	308	39995681	-	GSU0574	-	hypothetical protein
572	 66.04	0	603597..605525	+	642	39995682	cstA	GSU0575	-	carbon starvation protein A
573	 64.41	0	605795..606238	+	147	39995683	-	GSU0576	-	hypothetical protein
574	 70.08	+1	606305..607036	+	243	39995684	recO	GSU0577	-	DNA repair protein RecO
575	 62.46	0	607314..608192	+	292	39995685	glyQ	GSU0578	-	glycyl-tRNA synthetase subunit alpha
576	 66.28	+1	608194..610257	+	687	39995686	glyS	GSU0579	-	glycyl-tRNA synthetase, beta subunit
577	 63.33	0	610378..613044	+	888	39995687	ppdK	GSU0580	-	pyruvate phosphate dikinase
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.