IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
437	 64.66	0	471184..472080	+	298	39995547	ubiA	GSU0439	-	prenyltransferase
438	 65.71	0	472077..472700	+	207	39995548	-	GSU0440	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative
439	 65.19	0	472705..473790	+	361	39995549	-	GSU0441	-	radical SAM domain-containing protein
440	 65.73	0	473790..474854	+	354	39995550	-	GSU0442	-	radical SAM domain-containing protein
441	 65.71	0	475021..476166	+	381	39995551	-	GSU0443	-	ribonuclease D, putative
442	 65.01	0	476304..477026	-	240	39995552	-	GSU0444	-	hypothetical protein
443	 66.02	0	476386..477006	+	206	39995553	-	GSU0445	-	hypothetical protein
444	 65.39	0	477066..477848	-	260	39995554	-	GSU0446	-	hypothetical protein
445	 67.00	+1	477851..478750	-	299	39995555	prmA	GSU0447	-	ribosomal protein L11 methyltransferase
446	 64.43	0	478895..480058	+	387	39995556	-	GSU0448	-	hydrolase, putative
447	 44.76	-2	480111..480215	-	34	39995557	-	GSU0449	-	hypothetical protein
448	 61.60	0	480195..481004	+	269	39995558	-	GSU0450	-	hypothetical protein
449	 58.37	0	481052..481726	+	224	39995559	-	GSU0451	-	DNA-binding response regulator
450	 61.70	0	481730..483139	+	469	39995560	-	GSU0452	-	sensor histidine kinase
451	 64.89	0	483145..483876	+	243	39995561	pfs	GSU0453	-	MTA/SAH nucleosidase
452	 64.64	0	483876..484712	+	278	39995562	-	GSU0454	-	hypothetical protein
453	 58.28	0	484815..485267	+	150	39995563	-	GSU0455	-	lipoprotein A domain-containing protein
454	 64.55	0	485319..487868	-	849	39995564	-	GSU0456	-	hypothetical protein
455	 66.81	+1	487869..488558	-	229	39995565	-	GSU0457	-	putative lipoprotein
456	 66.67	+1	489195..489584	-	129	39995566	-	GSU0458	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative
457	 67.45	+1	489577..490602	-	341	39995567	-	GSU0459	-	beta-ketoacyl synthase domain-containing protein
458	 67.33	+1	490614..491819	-	401	39995568	fabF-1	GSU0460	-	3-oxoacyl-(acyl-carrier-protein) synthase II
459	 67.07	+1	491954..492694	-	246	39995569	fabG-1	GSU0461	-	3-oxoacyl-(acyl carrier protein) reductase
460	 65.46	0	492743..493816	-	357	39995570	-	GSU0462	-	M48 family peptidase
461	 63.84	0	493813..494943	-	376	39995571	-	GSU0463	-	hypothetical protein
462	 62.50	0	495068..495283	-	71	39995572	-	GSU0464	-	S4 domain-containing protein
463	 62.59	0	495363..495926	+	187	39995573	efp-1	GSU0465	-	translation elongation factor P
464	 62.63	0	496167..497207	-	346	39995574	ccpA-1	GSU0466	-	cytochrome c551 peroxidase
465	 64.74	0	497302..498183	-	293	39995575	-	GSU0467	-	hypothetical protein
466	 62.38	0	498210..498722	-	170	39995576	-	GSU0468	-	hypothetical protein
467	 71.47	+2	498751..499104	-	117	39995577	-	GSU0469	-	hypothetical protein
468	 63.58	0	499286..500647	-	453	39995578	-	GSU0470	-	sigma-54 dependent response regulator
469	 64.29	0	500664..501923	-	419	39995579	-	GSU0471	-	sensor histidine kinase
470	 60.22	0	502068..502532	+	154	39995580	-	GSU0472	-	hypothetical protein
471	 64.38	0	502666..503670	+	334	39995581	-	GSU0473	-	transcriptional regulator, putative
472	 60.61	0	503803..506181	+	792	39995582	-	GSU0474	-	sensory box/GGDEF family protein
473	 60.03	0	506171..508039	-	622	39995583	-	GSU0475	-	sensory box histidine kinase
474	 63.48	0	508371..509531	+	386	39995584	-	GSU0476	-	hypothetical protein
475	 63.54	0	509602..510240	+	212	39995585	-	GSU0477	-	HAD superfamily hydrolase
476	 59.69	0	510237..510695	+	152	39995586	-	GSU0478	-	hypothetical protein
477	 66.59	+1	510727..512118	+	463	39995587	aspA	GSU0479	-	aspartate ammonia-lyase
478	 60.89	0	512162..512386	+	74	39995588	-	GSU0480	-	NifU-like domain-containing protein
479	 57.21	0	512423..512623	+	66	39995589	-	GSU0481	-	hypothetical protein
480	 62.47	0	512758..513948	+	396	39995590	-	GSU0482	-	cardiolipin synthetase, putative
481	 62.32	0	514039..514752	+	237	39995591	-	GSU0483	-	exsB protein
482	 58.43	0	514818..515594	+	258	39995592	-	GSU0484	-	putative GTP cyclohydrolase
483	 62.74	0	515708..516445	+	245	39995593	-	GSU0485	-	hypothetical protein
484	 62.20	0	516396..517604	-	402	39995594	ilvA	GSU0486	-	threonine dehydratase
485	 61.75	0	517626..518621	-	331	39995595	-	GSU0487	-	cation efflux family protein
486	 62.78	0	518779..519729	+	316	39995596	trxB	GSU0488	-	thioredoxin reductase
487	 62.35	0	519735..521264	+	509	39995597	-	GSU0489	-	Mg chelatase-related protein
488	 60.09	0	521516..523111	+	531	39995598	-	GSU0490	-	acetyl-CoA hydrolase/transferase family protein
489	 64.45	0	523215..524567	-	450	39995599	rhlE-1	GSU0491	-	ATP-dependent RNA helicase RhlE
490	 63.50	0	524995..525879	-	294	39995600	-	GSU0492	-	phage integrase family site specific recombinase
491	 62.62	0	526070..527329	+	419	39995601	-	GSU0493	-	pyridine nucleotide-disulphide oxidoreductase family protein
492	 65.69	0	527317..528447	+	376	39995602	-	GSU0494	-	iron-sulfur cluster-binding protein
493	 61.01	0	528549..528707	+	52	39995603	-	GSU0495	-	hypothetical protein
494	 62.45	0	528747..529955	+	402	39995604	-	GSU0496	-	RND family efflux transporter MFP subunit
495	 59.65	0	531917..532087	+	56	39995605	-	GSU0498	-	hypothetical protein
496	 62.17	0	532095..532850	-	251	39995606	-	GSU0499	-	M23/M37 peptidase domain-containing protein
497	 60.82	0	533056..534852	+	598	39995607	typA	GSU0500	-	GTP-binding protein TypA
498	 57.52	0	534968..535732	+	254	39995608	-	GSU0501	-	putative lipoprotein
499	 63.98	0	535734..536105	+	123	39995609	-	GSU0502	-	putative lipoprotein
500	 61.23	0	536089..536511	+	140	39995610	-	GSU0503	-	crcB protein
501	 60.28	0	536521..536880	+	119	39995611	-	GSU0504	-	hypothetical protein
502	 61.18	0	536877..537386	+	169	39995612	-	GSU0505	-	rhodanese-like domain-containing protein
503	 57.31	0	537386..537802	+	138	39995613	-	GSU0506	-	methylamine utilization protein MauE, putative
504	 61.71	0	537876..538460	+	194	39995614	-	GSU0507	-	hypothetical protein
505	 59.24	0	538457..539479	+	340	39995615	-	GSU0508	-	hypothetical protein
506	 59.45	0	539537..542071	-	844	39995616	sfrA	GSU0509	-	Fe(III) reductase, alpha subunit
507	 60.62	0	542195..544213	-	672	39995617	sfrB	GSU0510	-	Fe(III) reductase, beta subunit
508	 58.42	0	544177..545607	+	476	39995618	-	GSU0511	-	hypothetical protein
509	 60.94	0	545697..547337	+	546	39995619	-	GSU0512	-	hypothetical protein
510	 63.97	0	547440..548033	+	197	39995620	-	GSU0513	-	dephospho-CoA kinase
511	 56.70	0	548065..548847	-	260	39995621	-	GSU0514	-	IclR family transcriptional regulator
512	 57.89	0	549161..549616	+	151	39995622	-	GSU0515	-	universal stress protein
513	 59.09	0	549749..550540	-	263	39995623	-	GSU0516	-	hypothetical protein
514	 64.61	0	550546..551760	-	404	39995624	-	GSU0517	-	hypothetical protein
515	 65.35	0	551782..553305	-	507	39995625	-	GSU0518	-	sodium/solute symporter family protein
516	 58.72	0	553298..553624	-	108	39995626	-	GSU0519	-	hypothetical protein
517	 68.87	+1	553701..554927	-	408	39995627	-	GSU0520	-	hypothetical protein
518	 59.84	0	554931..555560	-	209	39995628	-	GSU0521	-	methyltransferase, putative
519	 63.89	0	555700..557031	+	443	39995629	rhlB	GSU0522	-	ATP-dependent RNA helicase RhlB
520	 67.67	+1	557100..558890	-	596	39995630	pabB	GSU0523	-	para-aminobenzoate synthase, component I
521	 65.82	0	558887..559594	-	235	39995631	-	GSU0524	-	hypothetical protein
522	 62.31	0	559887..560345	-	152	39995632	dtd	GSU0525	-	D-tyrosyl-tRNA deacylase
523	 69.35	+1	560342..560863	-	173	39995633	-	GSU0526	-	hypothetical protein
524	 64.42	0	561008..562702	-	564	39995634	-	GSU0527	-	TrkA domain-containing protein
525	 69.21	+1	562724..563548	-	274	39995635	-	GSU0528	-	nitroreductase family protein
526	 64.42	0	563536..564426	-	296	39995636	nfo	GSU0529	-	endonuclease IV
527	 65.48	0	564430..564849	-	139	39995637	-	GSU0530	-	HIT family protein
528	 62.43	0	564955..565803	-	282	39995638	dapF	GSU0531	-	diaminopimelate epimerase
529	 51.25	-1	565957..566235	-	92	39995639	-	GSU0532	-	hypothetical protein
530	 60.74	0	566260..566664	+	134	39995640	-	GSU0533	-	cytochrome c family protein, putative
531	 58.28	0	566814..567278	+	154	39995641	-	GSU0534	-	Rrf2 family protein
532	 65.04	0	567299..568222	+	307	39995642	cysK	GSU0535	-	cysteine synthase A
533	 64.69	0	568286..569095	+	269	39995643	-	GSU0536	-	hypothetical protein
534	 64.76	0	569343..571391	+	682	39995644	-	GSU0537	-	sensory box/GGDEF family protein
535	 60.14	0	571372..571815	-	147	39995645	-	GSU0538	-	HSP20 family protein
536	 51.41	-1	571962..572138	-	58	39995646	-	GSU0539	-	hypothetical protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.