IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.33	-1	30..1367	+	445	47525234	dnaA	GSU0000.1	-	chromosomal replication initiator protein DnaA
2	 56.39	0	1594..2712	+	372	39995112	dnaN	GSU0001	-	DNA polymerase III, beta subunit
3	 61.29	0	2793..3890	+	365	39995113	recF	GSU0002	-	recF protein
4	 61.31	0	3901..6288	+	795	39995114	gyrB	GSU0003	-	DNA gyrase, B subunit
5	 62.55	0	6417..8990	+	857	39995115	gyrA	GSU0004	-	DNA gyrase, A subunit
6	 65.29	0	8956..10629	+	557	39995116	-	GSU0005	-	hypothetical protein
7	 64.98	0	10674..11681	+	335	39995117	gpsA	GSU0006	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
8	 60.99	0	11779..14067	+	762	39995118	-	GSU0007	-	sensory box histidine kinase
9	 62.80	0	14064..15614	+	516	39995119	-	GSU0008	-	sensory box histidine kinase/response regulator
10	 62.47	0	15619..17118	+	499	39995120	-	GSU0009	-	sensory box histidine kinase
11	 61.77	0	17115..19298	+	727	39995121	-	GSU0010	-	sensory box histidine kinase/response regulator
12	 64.19	0	19306..20232	+	308	39995122	-	GSU0011	-	ABC transporter, ATP-binding protein
13	 64.54	0	20296..21705	-	469	39995123	hemG	GSU0012	-	protoporphyrinogen oxidase
14	 57.11	0	21747..22175	-	142	39995124	-	GSU0013	-	MarR family transcriptional regulator
15	 60.68	0	22322..23206	+	294	39995125	-	GSU0014	-	phage prohead protease
16	 59.94	0	23311..24276	-	321	39995126	-	GSU0015	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
17	 59.77	0	24354..25295	-	313	39995127	-	GSU0016	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
18	 64.59	0	25356..28829	-	1157	39995128	mfd	GSU0017	-	transcription-repair coupling factor
19	 65.62	0	28904..30340	-	478	39995129	-	GSU0018	-	GntR family transcriptional regulator
20	 63.25	0	30586..31464	+	292	39995130	-	GSU0019	-	pentapeptide repeat-containing protein
21	 61.67	0	31533..32072	-	179	39995131	-	GSU0020	-	hexapeptide transferase family protein
22	 62.19	0	32106..33020	-	304	39995132	nadA	GSU0021	-	quinolinate synthetase
23	 62.20	0	33252..33587	+	111	39995133	-	GSU0022	-	mttA/Hcf106 family protein
24	 60.69	0	33645..34481	-	278	39995134	-	GSU0023	-	TPR domain-containing protein
25	 60.68	0	34573..35157	-	194	39995135	-	GSU0024	-	OmpA domain-containing protein
26	 61.05	0	35287..36585	-	432	39995136	-	GSU0025	-	tolB protein
27	 62.41	0	36585..37265	-	226	39995137	-	GSU0026	-	TonB-dependent receptor, putative
28	 59.76	0	37322..37741	-	139	39995138	-	GSU0027	-	TolR protein
29	 59.73	0	37751..38428	-	225	39995139	tolQ	GSU0028	-	tolQ protein
30	 62.95	0	38522..39301	-	259	39995140	-	GSU0029	-	carbon-nitrogen family hydrolase
31	 64.77	0	39428..40585	+	385	39995141	-	GSU0030	-	oxygen-independent coproporphyrinogen III oxidase, putative
32	 60.93	0	40721..41749	+	342	39995142	hrcA	GSU0031	-	heat-inducible transcription repressor HrcA
33	 61.53	0	41789..42391	+	200	39995143	grpE	GSU0032	-	GrpE protein
34	 61.17	0	42473..44383	+	636	39995144	dnaK	GSU0033	-	chaperone protein dnaK
35	 60.43	0	44496..45617	+	373	39995145	dnaJ	GSU0034	-	chaperone protein dnaJ
36	 62.78	0	45707..46246	-	179	39995146	-	GSU0035	-	2',5' RNA ligase, putative
37	 63.73	0	46259..47314	-	351	39995147	-	GSU0036	-	capsule biosynthesis protein, putative
38	 58.47	0	47406..48674	+	422	39995148	serS	GSU0037	-	seryl-tRNA synthetase
39	 52.35	-1	48933..49421	+	162	39995149	-	GSU0038	-	putative lipoprotein
40	 44.76	-2	49833..49937	+	34	39995150	-	GSU0039	-	hypothetical protein
41	 65.48	0	50370..51041	+	223	39995151	-	GSU0040	-	hypothetical protein
42	 67.33	+1	51143..51748	+	201	39995152	lexA-1	GSU0041	-	LexA repressor
43	 65.06	0	51755..52003	+	82	39995153	-	GSU0042	-	hypothetical protein
44	 63.12	0	52000..53241	+	413	39995154	-	GSU0043	-	ImpB/MucB/SamB family protein
45	 56.53	0	53925..60278	-	2117	39995155	-	GSU0044	-	hypothetical protein
46	 44.22	-2	60303..61211	-	302	39995156	-	GSU0045	-	hypothetical protein
47	 58.77	0	61246..62271	+	341	39995157	-	GSU0046	-	ISGsu6, transposase OrfA
48	 58.24	0	62268..63062	+	264	39995158	-	GSU0047	-	transposase/IS protein
49	 58.42	0	63072..63908	+	278	39995159	-	GSU0048	-	integrase
50	 54.62	-1	64130..65092	+	320	39995160	-	GSU0049	-	hypothetical protein
51	 56.39	0	65166..65564	+	132	39995161	-	GSU0050	-	hypothetical protein
52	 56.54	0	65570..68335	+	921	39995162	-	GSU0051	-	CRISPR-associated HD domain-containing protein
53	 50.39	-1	68332..69222	+	296	39995163	-	GSU0052	-	hypothetical protein
54	 54.03	-1	69225..70316	+	363	39995164	-	GSU0053	-	hypothetical protein
55	 58.09	0	70330..71949	+	539	39995165	-	GSU0054	-	hypothetical protein
56	 55.56	0	72000..72296	-	98	39995166	-	GSU0055	-	hypothetical protein
57	 51.85	-1	72289..72585	-	98	39995167	-	GSU0056	-	hypothetical protein
58	 63.51	0	72630..74309	+	559	39995168	-	GSU0057	-	CRISPR-associated Cas1/Cas4 family protein
59	 52.43	-1	74314..74601	+	95	39995169	-	GSU0058	-	CRISPR-associated Cas2 family protein
60	 59.63	0	77772..78041	-	89	39995170	-	GSU0059	-	hypothetical protein
61	 59.17	0	78089..78208	+	39	39995171	-	GSU0060	-	hypothetical protein
62	 55.56	0	78381..78839	+	152	39995172	-	GSU0061	-	hypothetical protein
63	 57.36	0	78940..79272	+	110	39995173	-	GSU0062	-	TraD protein, putative
64	 63.51	0	79477..79698	+	73	39995174	-	GSU0063	-	hypothetical protein
65	 55.00	-1	79725..81044	-	439	39995175	-	GSU0064	-	integrative genetic element Gsu32, integrase
66	 58.15	0	81425..81964	+	179	39995176	-	GSU0065	-	cytidine/deoxycytidylate deaminase family protein
67	 59.04	0	82566..83273	+	235	39995177	-	GSU0066	-	AhpC/Tsa family protein, selenocysteine-containing
68	 57.87	0	83254..83901	+	215	39995178	-	GSU0067	-	carbonic anhydrase
69	 60.46	0	84006..84488	+	160	39995179	-	GSU0068	-	cytochrome c family protein
70	 61.63	0	84481..85254	+	257	39995180	-	GSU0069	-	oxidoreductase, iron-sulfur cluster-binding subunit
71	 58.93	0	85257..86510	+	417	39995181	-	GSU0070	-	oxidoreductase, membrane subunit
72	 54.89	-1	86581..87030	-	149	39995182	-	GSU0071	-	hypothetical protein
73	 48.96	-2	87371..87466	-	31	39995183	-	GSU0072	-	hypothetical protein
74	 60.70	0	87476..88078	-	200	39995184	-	GSU0073	-	outer membrane protein, putative
75	 62.84	0	88132..88785	-	217	39995185	elbB	GSU0074	-	isoprenoid biosynthesis protein
76	 64.81	0	88858..89775	-	305	39995186	-	GSU0075	-	hypothetical protein
77	 63.50	0	89887..90486	+	199	39995187	-	GSU0076	-	hypothetical protein
78	 59.00	0	90505..90765	+	86	39995188	-	GSU0077	-	hypothetical protein
79	 65.50	0	90775..91116	+	113	39995189	-	GSU0078	-	hypothetical protein
80	 58.54	0	91135..91725	-	196	39995190	-	GSU0079	-	Cro/CI family transcriptional regulator
81	 63.06	0	91907..93322	+	471	39995191	degQ	GSU0080	-	protease degQ
82	 61.36	0	93366..93629	+	87	39995192	-	GSU0081	-	hypothetical protein
83	 65.43	0	93714..94682	+	322	39995193	rluD	GSU0082	-	ribosomal large subunit pseudouridine synthase D
84	 64.92	0	94685..95485	+	266	39995194	-	GSU0083	-	hypothetical protein
85	 67.43	+1	95499..96674	+	391	39995195	-	GSU0084	-	hypothetical protein
86	 64.06	0	96773..97615	-	280	39995196	-	GSU0085	-	heterodisulfide reductase, cytochrome reductase subunit
87	 57.35	0	97614..98021	+	135	39995197	-	GSU0086	-	hypothetical protein
88	 63.38	0	98008..99012	-	334	39995198	-	GSU0087	-	heterodisulfide reductase, iron-sulfur binding subunit, putative
89	 65.70	0	99056..99985	-	309	39995199	-	GSU0088	-	heterodisulfide reductase subunit
90	 62.28	0	100019..100519	-	166	39995200	-	GSU0089	-	heterodisulfide reductase subunit
91	 64.26	0	100519..102516	-	665	39995201	-	GSU0090	-	heterodisulfide reductase subunit
92	 64.09	0	102517..103407	-	296	39995202	-	GSU0091	-	heterodisulfide reductase subunit
93	 59.74	0	103404..103952	-	182	39995203	-	GSU0092	-	heterodisulfide reductase subunit
94	 61.92	0	104580..106412	+	610	39995204	-	GSU0093	-	ABC transporter, ATP-binding/permease protein
95	 63.51	0	106783..108522	+	579	39995205	dnaX	GSU0094	-	DNA polymerase III, gamma and tau subunits
96	 56.19	0	108593..108907	+	104	39995206	-	GSU0095	-	hypothetical protein
97	 62.63	0	109096..109689	+	197	39995207	recR	GSU0096	-	recombination protein RecR
98	 62.90	0	109754..113341	+	1195	39995208	-	GSU0097	-	pyruvate ferredoxin/flavodoxin oxidoreductase
99	 57.93	0	113608..114099	+	163	39995209	-	GSU0098	-	MglB protein
100	 56.29	0	114118..114705	+	195	39995210	-	GSU0099	-	MglA protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.