IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
377	 70.49	+1	413770..414579	+	269	39995487	-	GSU0379	-	biotin/lipoate A/B protein ligase family protein
378	 66.89	+1	414576..415487	+	303	39995488	lipA	GSU0380	-	lipoyl synthase
379	 59.11	0	415484..415708	+	74	39995489	-	GSU0381	-	putative lipoprotein
380	 61.73	0	415717..416121	+	134	39995490	-	GSU0382	-	hypothetical protein
381	 62.00	0	416237..416665	+	142	39995491	-	GSU0383	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
382	 57.65	0	416747..417223	-	158	39995492	-	GSU0384	-	hypothetical protein
383	 65.20	0	417404..418288	+	294	39995493	-	GSU0385	-	NADH dehydrogenase subunit, putative
384	 63.77	0	418326..419015	-	229	39995494	radC	GSU0386	-	DNA repair protein RadC
385	 63.33	0	419107..419916	-	269	39995495	-	GSU0387	-	undecaprenol kinase, putative
386	 56.47	0	420116..420733	+	205	39995496	-	GSU0388	-	hypothetical protein
387	 60.48	0	420726..421727	+	333	39995497	-	GSU0389	-	phosphate transporter, putative
388	 59.83	0	421780..422262	-	160	39995498	-	GSU0390	-	hypothetical protein
389	 65.53	0	422509..423822	+	437	39995499	-	GSU0391	-	Outer membrane efflux family protein
390	 67.21	+1	423819..424931	+	370	39995500	-	GSU0392	-	RND family efflux transporter MFP subunit
391	 65.00	0	424968..425147	+	59	39995501	-	GSU0393	-	hypothetical protein
392	 62.93	0	425153..428386	+	1077	39995502	-	GSU0394	-	AcrB/AcrD/AcrF family protein
393	 63.17	0	428361..428789	+	142	39995503	-	GSU0395	-	hypothetical protein
394	 55.40	0	428803..429015	+	70	39995504	-	GSU0396	-	hypothetical protein
395	 64.86	0	429012..429842	+	276	39995505	-	GSU0397	-	metallo-beta-lactamase family protein
396	 64.71	0	429887..430243	+	118	39995506	-	GSU0398	-	phage shock protein E, putative
397	 66.67	+1	430266..430541	+	91	39995507	-	GSU0399	-	ArsR family transcriptional regulator
398	 62.42	0	430815..432464	+	549	39995508	-	GSU0400	-	methyl-accepting chemotaxis protein
399	 59.57	0	432601..434220	+	539	39995509	-	GSU0401	-	methyl-accepting chemotaxis protein, putative
400	 54.41	-1	434398..434805	+	135	39995510	-	GSU0402	-	hemerythrin family protein
401	 55.65	0	434966..435328	+	120	39995511	cheY-1	GSU0403	-	chemotaxis protein CheY
402	 56.80	0	435325..435831	+	168	39995512	-	GSU0404	-	hypothetical protein
403	 61.08	0	435856..436965	+	369	39995513	-	GSU0405	-	response regulator
404	 63.64	0	437013..439259	+	748	39995514	-	GSU0406	-	TPR domain-containing protein
405	 58.81	0	439493..439912	+	139	39995515	flgB	GSU0407	-	flagellar basal-body rod protein FlgB
406	 62.59	0	439915..440355	+	146	39995516	flgC	GSU0408	-	flagellar basal-body rod protein FlgC
407	 58.75	0	440461..440763	+	100	39995517	fliE	GSU0409	-	flagellar hook-basal body complex protein FliE
408	 61.11	0	440788..442371	+	527	39995518	fliF	GSU0410	-	flagellar M-ring protein FliF
409	 58.81	0	442383..443375	+	330	39995519	fliG	GSU0411	-	flagellar motor switch protein FliG
410	 67.01	+1	443362..444243	+	293	39995520	-	GSU0412	-	flagellar assembly protein fliH, putative
411	 62.52	0	444236..445561	+	441	39995521	fliI	GSU0413	-	flagellum-specific ATP synthase FliI
412	 59.18	0	445621..446061	+	146	39995522	-	GSU0414	-	flagellar protein FliJ, putative
413	 65.29	0	446076..446585	+	169	39995523	-	GSU0415	-	hypothetical protein
414	 65.21	0	446799..448238	+	479	39995524	-	GSU0416	-	hypothetical protein
415	 59.36	0	448263..448919	+	218	39995525	flgD	GSU0417	-	flagellar hook assembly protein FlgD
416	 59.69	0	448927..449313	+	128	39995526	-	GSU0418	-	hypothetical protein
417	 62.86	0	449476..450735	+	419	39995527	flgE	GSU0419	-	flagellar hook protein FlgE
418	 59.96	0	451106..451627	+	173	39995528	-	GSU0420	-	flagellar protein FliL
419	 59.57	0	451662..452648	+	328	39995529	fliM	GSU0421	-	flagellar motor switch protein FliM
420	 57.52	0	452645..452950	+	101	39995530	fliN	GSU0422	-	flagellar motor switch protein FliN
421	 61.59	0	453450..454217	+	255	39995531	fliP	GSU0423	-	flagellar biosynthesis protein FliP
422	 58.89	0	454230..454499	+	89	39995532	fliQ	GSU0424	-	flagellar biosynthetic protein FliQ
423	 60.63	0	454550..455344	+	264	39995533	fliR	GSU0425	-	flagellar biosynthesis protein FliR
424	 55.05	-1	455349..456407	+	352	39995534	flhB	GSU0426	-	flagellar biosynthesis protein FlhB
425	 66.03	0	456466..456936	-	156	39995535	-	GSU0427	-	putative lipoprotein
426	 61.44	0	457223..457777	+	184	39995536	-	GSU0428	-	putative lipoprotein
427	 68.18	+1	457774..459165	+	463	39995537	-	GSU0429	-	hypothetical protein
428	 64.22	0	459169..459576	+	135	39995538	-	GSU0430	-	tail lysozyme, putative
429	 64.19	0	459605..461338	+	577	39995539	-	GSU0431	-	hypothetical protein
430	 65.76	0	461302..462294	+	330	39995540	-	GSU0432	-	hypothetical protein
431	 68.87	+1	462307..464934	+	875	39995541	-	GSU0433	-	clpB protein, putative
432	 62.99	0	464944..465948	-	334	39995542	-	GSU0434	-	hypothetical protein
433	 65.76	0	466122..467771	+	549	39995543	-	GSU0435	-	MSHA biogenesis protein MshE, putative
434	 62.56	0	467785..468855	+	356	39995544	pilT-3	GSU0436	-	twitching motility protein PilT
435	 68.57	+1	469239..470654	+	471	39995545	ubiD	GSU0437	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
436	 64.03	0	470654..471184	+	176	39995546	-	GSU0438	-	putative lipoprotein
437	 64.66	0	471184..472080	+	298	39995547	ubiA	GSU0439	-	prenyltransferase
438	 65.71	0	472077..472700	+	207	39995548	-	GSU0440	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative
439	 65.19	0	472705..473790	+	361	39995549	-	GSU0441	-	radical SAM domain-containing protein
440	 65.73	0	473790..474854	+	354	39995550	-	GSU0442	-	radical SAM domain-containing protein
441	 65.71	0	475021..476166	+	381	39995551	-	GSU0443	-	ribonuclease D, putative
442	 65.01	0	476304..477026	-	240	39995552	-	GSU0444	-	hypothetical protein
443	 66.02	0	476386..477006	+	206	39995553	-	GSU0445	-	hypothetical protein
444	 65.39	0	477066..477848	-	260	39995554	-	GSU0446	-	hypothetical protein
445	 67.00	+1	477851..478750	-	299	39995555	prmA	GSU0447	-	ribosomal protein L11 methyltransferase
446	 64.43	0	478895..480058	+	387	39995556	-	GSU0448	-	hydrolase, putative
447	 44.76	-2	480111..480215	-	34	39995557	-	GSU0449	-	hypothetical protein
448	 61.60	0	480195..481004	+	269	39995558	-	GSU0450	-	hypothetical protein
449	 58.37	0	481052..481726	+	224	39995559	-	GSU0451	-	DNA-binding response regulator
450	 61.70	0	481730..483139	+	469	39995560	-	GSU0452	-	sensor histidine kinase
451	 64.89	0	483145..483876	+	243	39995561	pfs	GSU0453	-	MTA/SAH nucleosidase
452	 64.64	0	483876..484712	+	278	39995562	-	GSU0454	-	hypothetical protein
453	 58.28	0	484815..485267	+	150	39995563	-	GSU0455	-	lipoprotein A domain-containing protein
454	 64.55	0	485319..487868	-	849	39995564	-	GSU0456	-	hypothetical protein
455	 66.81	+1	487869..488558	-	229	39995565	-	GSU0457	-	putative lipoprotein
456	 66.67	+1	489195..489584	-	129	39995566	-	GSU0458	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase, putative
457	 67.45	+1	489577..490602	-	341	39995567	-	GSU0459	-	beta-ketoacyl synthase domain-containing protein
458	 67.33	+1	490614..491819	-	401	39995568	fabF-1	GSU0460	-	3-oxoacyl-(acyl-carrier-protein) synthase II
459	 67.07	+1	491954..492694	-	246	39995569	fabG-1	GSU0461	-	3-oxoacyl-(acyl carrier protein) reductase
460	 65.46	0	492743..493816	-	357	39995570	-	GSU0462	-	M48 family peptidase
461	 63.84	0	493813..494943	-	376	39995571	-	GSU0463	-	hypothetical protein
462	 62.50	0	495068..495283	-	71	39995572	-	GSU0464	-	S4 domain-containing protein
463	 62.59	0	495363..495926	+	187	39995573	efp-1	GSU0465	-	translation elongation factor P
464	 62.63	0	496167..497207	-	346	39995574	ccpA-1	GSU0466	-	cytochrome c551 peroxidase
465	 64.74	0	497302..498183	-	293	39995575	-	GSU0467	-	hypothetical protein
466	 62.38	0	498210..498722	-	170	39995576	-	GSU0468	-	hypothetical protein
467	 71.47	+2	498751..499104	-	117	39995577	-	GSU0469	-	hypothetical protein
468	 63.58	0	499286..500647	-	453	39995578	-	GSU0470	-	sigma-54 dependent response regulator
469	 64.29	0	500664..501923	-	419	39995579	-	GSU0471	-	sensor histidine kinase
470	 60.22	0	502068..502532	+	154	39995580	-	GSU0472	-	hypothetical protein
471	 64.38	0	502666..503670	+	334	39995581	-	GSU0473	-	transcriptional regulator, putative
472	 60.61	0	503803..506181	+	792	39995582	-	GSU0474	-	sensory box/GGDEF family protein
473	 60.03	0	506171..508039	-	622	39995583	-	GSU0475	-	sensory box histidine kinase
474	 63.48	0	508371..509531	+	386	39995584	-	GSU0476	-	hypothetical protein
475	 63.54	0	509602..510240	+	212	39995585	-	GSU0477	-	HAD superfamily hydrolase
476	 59.69	0	510237..510695	+	152	39995586	-	GSU0478	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.