IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
325	 60.36	0	355233..355676	-	147	39995435	gspG	GSU0326	-	general secretion pathway protein G
326	 64.11	0	355703..356914	-	403	39995436	-	GSU0327	-	general secretion pathway protein F
327	 64.08	0	356895..358439	-	514	39995437	gspE	GSU0328	-	general secretion pathway protein E
328	 59.98	0	358454..360352	-	632	39995438	-	GSU0329	-	general secretion pathway protein D, putative
329	 60.62	0	360462..361337	-	291	39995439	-	GSU0330	-	general secretion pathway protein C, putative
330	 58.14	0	361506..362900	+	464	39995440	-	GSU0331	-	trypsin domain/PDZ domain-containing protein
331	 59.83	0	362976..364466	+	496	39995441	pepA	GSU0332	-	aminopeptidase A/I
332	 55.80	0	364544..364819	-	91	39995442	atpE	GSU0333	-	ATP synthase F0, C subunit
333	 51.88	-1	364879..365568	-	229	39995443	atpB	GSU0334	-	ATP synthase F0, A subunit
334	 54.26	-1	365573..365959	-	128	39995444	-	GSU0335	-	hypothetical protein
335	 46.75	-2	365931..366176	-	81	39995445	-	GSU0336	-	hypothetical protein
336	 57.32	0	366273..367556	-	427	39995446	hemL	GSU0337	-	glutamate-1-semialdehyde-2,1-aminomutase
337	 48.18	-2	367863..368219	+	118	39995447	nuoA-1	GSU0338	-	NADH dehydrogenase I, A subunit
338	 55.95	0	368210..368722	+	170	39995448	nuoB	GSU0339	-	NADH dehydrogenase I, B subunit
339	 53.37	-1	368755..369243	+	162	39995449	nuoC	GSU0340	-	NADH dehydrogenase I, C subunit
340	 52.43	-1	369296..370468	+	390	39995450	nouD	GSU0341	-	NADH dehydrogenase I, D subunit
341	 54.60	-1	370496..371017	+	173	39995451	nuoE-1	GSU0342	-	NADH dehydrogenase I, E subunit
342	 54.00	-1	371053..372828	+	591	39995452	nouF	GSU0343	-	NADH dehydrogenase I, F subunit
343	 54.57	-1	372869..375349	+	826	39995453	-	GSU0344	-	NADH dehydrogenase I, G subunit, putative
344	 52.05	-1	375402..376448	+	348	39995454	nuoH-1	GSU0345	-	NADH dehydrogenase I, H subunit
345	 47.12	-2	376470..376868	+	132	39995455	nuoI-1	GSU0346	-	NADH dehydrogenase I, I subunit
346	 50.40	-1	376879..377382	+	167	39995456	nouJ	GSU0347	-	NADH dehydrogenase I, J subunit
347	 45.87	-2	377401..377703	+	100	39995457	nuoK	GSU0348	-	NADH dehydrogenase I, K subunit
348	 51.17	-1	377757..379757	+	666	39995458	nuoL-1	GSU0349	-	NADH dehydrogenase I, L subunit
349	 51.43	-1	379791..381359	+	522	39995459	nuoM-1	GSU0350	-	NADH dehydrogenase I, M subunit
350	 51.89	-1	381394..382848	+	484	39995460	nuoN-1	GSU0351	-	NADH dehydrogenase I, N subunit
351	 56.20	0	382951..383466	+	171	39995461	psaD	GSU0352	-	thiol peroxidase
352	 55.70	0	383605..384051	+	148	39995462	-	GSU0353	-	hypothetical protein
353	 59.36	0	384038..385228	+	396	39995463	-	GSU0354	-	hypothetical protein
354	 56.05	0	385231..385635	+	134	39995464	-	GSU0355	-	hypothetical protein
355	 59.80	0	387351..388952	-	533	39995465	-	GSU0357	-	cytochrome c family protein
356	 61.27	0	388985..389410	-	141	39995466	-	GSU0358	-	iron-sulfur cluster-binding protein
357	 60.42	0	389808..391184	-	458	39995467	-	GSU0359	-	sensory box protein/sigma-54 dependent transcriptional regulator
358	 60.62	0	391444..392733	+	429	39995468	-	GSU0360	-	OmpA domain-containing protein
359	 59.96	0	392844..393737	-	297	39995469	-	GSU0361	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
360	 56.80	0	393987..394442	+	151	39995470	-	GSU0362	-	hypothetical protein
361	 65.40	0	394457..396979	-	840	39995471	dinG	GSU0363	-	ATP-dependent helicase DinG
362	 60.51	0	397076..397351	-	91	39995472	cyd-1	GSU0364	-	cytochrome c3
363	 60.07	0	397486..397773	-	95	39995473	cyd-2	GSU0365	-	cytochrome c3
364	 66.45	+1	397904..398824	+	306	39995474	-	GSU0366	-	transcriptional regulator, putative
365	 66.45	+1	398821..399738	+	305	39995475	-	GSU0367	-	radical SAM family protein
366	 61.39	0	399774..401024	-	416	39995476	-	GSU0368	-	putative lipoprotein
367	 65.20	0	401190..401462	-	90	39995477	-	GSU0369	-	FlhB domain-containing protein
368	 69.85	+1	401449..403206	-	585	39995478	-	GSU0370	-	hypothetical protein
369	 64.80	0	403252..405816	-	854	39995479	-	GSU0371	-	carbohydrate phosphorylase family protein
370	 63.71	0	406003..407388	-	461	39995480	-	GSU0372	-	sigma-54 dependent DNA-binding response regulator
371	 61.61	0	407414..408916	-	500	39995481	-	GSU0373	-	sensor histidine kinase
372	 65.77	0	409015..409347	+	110	39995482	hypA	GSU0374	-	hydrogenase expression/formation protein hupa
373	 65.38	0	409470..410558	+	362	39995483	gcvT	GSU0375	-	glycine cleavage system T protein
374	 60.80	0	410614..410988	+	124	39995484	gcvH-1	GSU0376	-	glycine cleavage system H protein
375	 67.56	+1	410988..412334	+	448	39995485	-	GSU0377	-	glycine dehydrogenase subunit 1
376	 64.18	0	412325..413770	+	481	39995486	-	GSU0378	-	glycine dehydrogenase subunit 2
377	 70.49	+1	413770..414579	+	269	39995487	-	GSU0379	-	biotin/lipoate A/B protein ligase family protein
378	 66.89	+1	414576..415487	+	303	39995488	lipA	GSU0380	-	lipoyl synthase
379	 59.11	0	415484..415708	+	74	39995489	-	GSU0381	-	putative lipoprotein
380	 61.73	0	415717..416121	+	134	39995490	-	GSU0382	-	hypothetical protein
381	 62.00	0	416237..416665	+	142	39995491	-	GSU0383	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
382	 57.65	0	416747..417223	-	158	39995492	-	GSU0384	-	hypothetical protein
383	 65.20	0	417404..418288	+	294	39995493	-	GSU0385	-	NADH dehydrogenase subunit, putative
384	 63.77	0	418326..419015	-	229	39995494	radC	GSU0386	-	DNA repair protein RadC
385	 63.33	0	419107..419916	-	269	39995495	-	GSU0387	-	undecaprenol kinase, putative
386	 56.47	0	420116..420733	+	205	39995496	-	GSU0388	-	hypothetical protein
387	 60.48	0	420726..421727	+	333	39995497	-	GSU0389	-	phosphate transporter, putative
388	 59.83	0	421780..422262	-	160	39995498	-	GSU0390	-	hypothetical protein
389	 65.53	0	422509..423822	+	437	39995499	-	GSU0391	-	Outer membrane efflux family protein
390	 67.21	+1	423819..424931	+	370	39995500	-	GSU0392	-	RND family efflux transporter MFP subunit
391	 65.00	0	424968..425147	+	59	39995501	-	GSU0393	-	hypothetical protein
392	 62.93	0	425153..428386	+	1077	39995502	-	GSU0394	-	AcrB/AcrD/AcrF family protein
393	 63.17	0	428361..428789	+	142	39995503	-	GSU0395	-	hypothetical protein
394	 55.40	0	428803..429015	+	70	39995504	-	GSU0396	-	hypothetical protein
395	 64.86	0	429012..429842	+	276	39995505	-	GSU0397	-	metallo-beta-lactamase family protein
396	 64.71	0	429887..430243	+	118	39995506	-	GSU0398	-	phage shock protein E, putative
397	 66.67	+1	430266..430541	+	91	39995507	-	GSU0399	-	ArsR family transcriptional regulator
398	 62.42	0	430815..432464	+	549	39995508	-	GSU0400	-	methyl-accepting chemotaxis protein
399	 59.57	0	432601..434220	+	539	39995509	-	GSU0401	-	methyl-accepting chemotaxis protein, putative
400	 54.41	-1	434398..434805	+	135	39995510	-	GSU0402	-	hemerythrin family protein
401	 55.65	0	434966..435328	+	120	39995511	cheY-1	GSU0403	-	chemotaxis protein CheY
402	 56.80	0	435325..435831	+	168	39995512	-	GSU0404	-	hypothetical protein
403	 61.08	0	435856..436965	+	369	39995513	-	GSU0405	-	response regulator
404	 63.64	0	437013..439259	+	748	39995514	-	GSU0406	-	TPR domain-containing protein
405	 58.81	0	439493..439912	+	139	39995515	flgB	GSU0407	-	flagellar basal-body rod protein FlgB
406	 62.59	0	439915..440355	+	146	39995516	flgC	GSU0408	-	flagellar basal-body rod protein FlgC
407	 58.75	0	440461..440763	+	100	39995517	fliE	GSU0409	-	flagellar hook-basal body complex protein FliE
408	 61.11	0	440788..442371	+	527	39995518	fliF	GSU0410	-	flagellar M-ring protein FliF
409	 58.81	0	442383..443375	+	330	39995519	fliG	GSU0411	-	flagellar motor switch protein FliG
410	 67.01	+1	443362..444243	+	293	39995520	-	GSU0412	-	flagellar assembly protein fliH, putative
411	 62.52	0	444236..445561	+	441	39995521	fliI	GSU0413	-	flagellum-specific ATP synthase FliI
412	 59.18	0	445621..446061	+	146	39995522	-	GSU0414	-	flagellar protein FliJ, putative
413	 65.29	0	446076..446585	+	169	39995523	-	GSU0415	-	hypothetical protein
414	 65.21	0	446799..448238	+	479	39995524	-	GSU0416	-	hypothetical protein
415	 59.36	0	448263..448919	+	218	39995525	flgD	GSU0417	-	flagellar hook assembly protein FlgD
416	 59.69	0	448927..449313	+	128	39995526	-	GSU0418	-	hypothetical protein
417	 62.86	0	449476..450735	+	419	39995527	flgE	GSU0419	-	flagellar hook protein FlgE
418	 59.96	0	451106..451627	+	173	39995528	-	GSU0420	-	flagellar protein FliL
419	 59.57	0	451662..452648	+	328	39995529	fliM	GSU0421	-	flagellar motor switch protein FliM
420	 57.52	0	452645..452950	+	101	39995530	fliN	GSU0422	-	flagellar motor switch protein FliN
421	 61.59	0	453450..454217	+	255	39995531	fliP	GSU0423	-	flagellar biosynthesis protein FliP
422	 58.89	0	454230..454499	+	89	39995532	fliQ	GSU0424	-	flagellar biosynthetic protein FliQ
423	 60.63	0	454550..455344	+	264	39995533	fliR	GSU0425	-	flagellar biosynthesis protein FliR
424	 55.05	-1	455349..456407	+	352	39995534	flhB	GSU0426	-	flagellar biosynthesis protein FlhB
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.