IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
291	 63.74	0	321610..321951	+	113	39995401	-	GSU0292	-	hypothetical protein
292	 63.45	0	321952..323040	-	362	39995402	cheB-1	GSU0293	-	protein-glutamate methylesterase
293	 59.32	0	323047..323958	-	303	39995403	-	GSU0294	-	HD domain-containing protein
294	 50.96	-1	323955..324788	-	277	39995404	cheR-1	GSU0295	-	chemotaxis protein methyltransferase CheR
295	 61.92	0	324839..326671	-	610	39995405	-	GSU0296	-	chemotaxis protein CheA, putative
296	 56.57	0	326720..327214	-	164	39995406	cheW-1	GSU0297	-	purine-binding chemotaxis protein CheW
297	 58.16	0	327608..328606	+	332	39995407	-	GSU0298	-	sigma-54 dependent DNA-binding response regulator, interruption-C
298	 51.03	-1	328610..329728	-	372	39995408	-	GSU0299	-	ISGsu1, transposase
299	 54.25	-1	329817..330251	+	144	39995409	-	GSU0300	-	sigma-54 dependent DNA-binding response regulator, interruption-N
300	 65.48	0	330437..331027	+	196	39995410	-	GSU0301	-	lytic murein transglycosylase, putative
301	 63.87	0	331170..333134	+	654	39995411	-	GSU0302	-	hypothetical protein
302	 59.11	0	333197..334414	+	405	39995412	-	GSU0303	-	sensory box protein
303	 62.95	0	334411..337044	-	877	39995413	pepN	GSU0304	-	aminopeptidase N
304	 58.69	0	337596..338360	+	254	39995414	hypB	GSU0305	-	hydrogenase accessory protein HypB
305	 64.92	0	338376..340667	+	763	39995415	hypF	GSU0306	-	hydrogenase maturation protein HypF
306	 58.87	0	340674..340904	+	76	39995416	hypC	GSU0307	-	hydrogenase assembly chaperone hypC/hupF
307	 65.84	0	340904..341995	+	363	39995417	hypD	GSU0308	-	hydrogenase expression/formation protein HypD
308	 64.50	0	342016..343029	+	337	39995418	hypE	GSU0309	-	hydrogenase expression/formation protein HypE
309	 61.17	0	343116..343970	+	284	39995419	-	GSU0310	-	hypothetical protein
310	 51.52	-1	344076..344207	-	43	39995420	-	GSU0311	-	hypothetical protein
311	 53.41	-1	344230..344508	+	92	39995421	-	GSU0312	-	hypothetical protein
312	 64.97	0	344584..345351	+	255	39995422	-	GSU0313	-	dnaJ domain-containing protein
313	 60.69	0	345463..346566	+	367	39995423	-	GSU0314	-	general secretion pathway protein E
314	 59.40	0	346535..347002	-	155	39995424	-	GSU0315	-	hypothetical protein
315	 60.78	0	346965..347660	-	231	39995425	-	GSU0316	-	hypothetical protein
316	 58.74	0	348045..348776	+	243	39995426	-	GSU0317	-	hypothetical protein
317	 61.04	0	348883..350127	+	414	39995427	-	GSU0318	-	M48 family peptidase
318	 64.52	0	350163..351002	-	279	39995428	-	GSU0319	-	hypothetical protein
319	 59.38	0	350999..351547	-	182	39995429	-	GSU0320	-	hypothetical protein
320	 65.45	0	351544..352860	-	438	39995430	-	GSU0321	-	general secretion pathway protein L, putative
321	 62.00	0	352860..353780	-	306	39995431	gspK	GSU0322	-	general secretion pathway protein K
322	 62.39	0	353777..354337	-	186	39995432	-	GSU0323	-	general secretion pathway protein j, putative
323	 59.10	0	354384..354740	-	118	39995433	-	GSU0324	-	general secretion pathway protein I, putative
324	 63.83	0	354737..355264	-	175	39995434	-	GSU0325	-	general secretion pathway protein H, putative
325	 60.36	0	355233..355676	-	147	39995435	gspG	GSU0326	-	general secretion pathway protein G
326	 64.11	0	355703..356914	-	403	39995436	-	GSU0327	-	general secretion pathway protein F
327	 64.08	0	356895..358439	-	514	39995437	gspE	GSU0328	-	general secretion pathway protein E
328	 59.98	0	358454..360352	-	632	39995438	-	GSU0329	-	general secretion pathway protein D, putative
329	 60.62	0	360462..361337	-	291	39995439	-	GSU0330	-	general secretion pathway protein C, putative
330	 58.14	0	361506..362900	+	464	39995440	-	GSU0331	-	trypsin domain/PDZ domain-containing protein
331	 59.83	0	362976..364466	+	496	39995441	pepA	GSU0332	-	aminopeptidase A/I
332	 55.80	0	364544..364819	-	91	39995442	atpE	GSU0333	-	ATP synthase F0, C subunit
333	 51.88	-1	364879..365568	-	229	39995443	atpB	GSU0334	-	ATP synthase F0, A subunit
334	 54.26	-1	365573..365959	-	128	39995444	-	GSU0335	-	hypothetical protein
335	 46.75	-2	365931..366176	-	81	39995445	-	GSU0336	-	hypothetical protein
336	 57.32	0	366273..367556	-	427	39995446	hemL	GSU0337	-	glutamate-1-semialdehyde-2,1-aminomutase
337	 48.18	-2	367863..368219	+	118	39995447	nuoA-1	GSU0338	-	NADH dehydrogenase I, A subunit
338	 55.95	0	368210..368722	+	170	39995448	nuoB	GSU0339	-	NADH dehydrogenase I, B subunit
339	 53.37	-1	368755..369243	+	162	39995449	nuoC	GSU0340	-	NADH dehydrogenase I, C subunit
340	 52.43	-1	369296..370468	+	390	39995450	nouD	GSU0341	-	NADH dehydrogenase I, D subunit
341	 54.60	-1	370496..371017	+	173	39995451	nuoE-1	GSU0342	-	NADH dehydrogenase I, E subunit
342	 54.00	-1	371053..372828	+	591	39995452	nouF	GSU0343	-	NADH dehydrogenase I, F subunit
343	 54.57	-1	372869..375349	+	826	39995453	-	GSU0344	-	NADH dehydrogenase I, G subunit, putative
344	 52.05	-1	375402..376448	+	348	39995454	nuoH-1	GSU0345	-	NADH dehydrogenase I, H subunit
345	 47.12	-2	376470..376868	+	132	39995455	nuoI-1	GSU0346	-	NADH dehydrogenase I, I subunit
346	 50.40	-1	376879..377382	+	167	39995456	nouJ	GSU0347	-	NADH dehydrogenase I, J subunit
347	 45.87	-2	377401..377703	+	100	39995457	nuoK	GSU0348	-	NADH dehydrogenase I, K subunit
348	 51.17	-1	377757..379757	+	666	39995458	nuoL-1	GSU0349	-	NADH dehydrogenase I, L subunit
349	 51.43	-1	379791..381359	+	522	39995459	nuoM-1	GSU0350	-	NADH dehydrogenase I, M subunit
350	 51.89	-1	381394..382848	+	484	39995460	nuoN-1	GSU0351	-	NADH dehydrogenase I, N subunit
351	 56.20	0	382951..383466	+	171	39995461	psaD	GSU0352	-	thiol peroxidase
352	 55.70	0	383605..384051	+	148	39995462	-	GSU0353	-	hypothetical protein
353	 59.36	0	384038..385228	+	396	39995463	-	GSU0354	-	hypothetical protein
354	 56.05	0	385231..385635	+	134	39995464	-	GSU0355	-	hypothetical protein
355	 59.80	0	387351..388952	-	533	39995465	-	GSU0357	-	cytochrome c family protein
356	 61.27	0	388985..389410	-	141	39995466	-	GSU0358	-	iron-sulfur cluster-binding protein
357	 60.42	0	389808..391184	-	458	39995467	-	GSU0359	-	sensory box protein/sigma-54 dependent transcriptional regulator
358	 60.62	0	391444..392733	+	429	39995468	-	GSU0360	-	OmpA domain-containing protein
359	 59.96	0	392844..393737	-	297	39995469	-	GSU0361	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
360	 56.80	0	393987..394442	+	151	39995470	-	GSU0362	-	hypothetical protein
361	 65.40	0	394457..396979	-	840	39995471	dinG	GSU0363	-	ATP-dependent helicase DinG
362	 60.51	0	397076..397351	-	91	39995472	cyd-1	GSU0364	-	cytochrome c3
363	 60.07	0	397486..397773	-	95	39995473	cyd-2	GSU0365	-	cytochrome c3
364	 66.45	+1	397904..398824	+	306	39995474	-	GSU0366	-	transcriptional regulator, putative
365	 66.45	+1	398821..399738	+	305	39995475	-	GSU0367	-	radical SAM family protein
366	 61.39	0	399774..401024	-	416	39995476	-	GSU0368	-	putative lipoprotein
367	 65.20	0	401190..401462	-	90	39995477	-	GSU0369	-	FlhB domain-containing protein
368	 69.85	+1	401449..403206	-	585	39995478	-	GSU0370	-	hypothetical protein
369	 64.80	0	403252..405816	-	854	39995479	-	GSU0371	-	carbohydrate phosphorylase family protein
370	 63.71	0	406003..407388	-	461	39995480	-	GSU0372	-	sigma-54 dependent DNA-binding response regulator
371	 61.61	0	407414..408916	-	500	39995481	-	GSU0373	-	sensor histidine kinase
372	 65.77	0	409015..409347	+	110	39995482	hypA	GSU0374	-	hydrogenase expression/formation protein hupa
373	 65.38	0	409470..410558	+	362	39995483	gcvT	GSU0375	-	glycine cleavage system T protein
374	 60.80	0	410614..410988	+	124	39995484	gcvH-1	GSU0376	-	glycine cleavage system H protein
375	 67.56	+1	410988..412334	+	448	39995485	-	GSU0377	-	glycine dehydrogenase subunit 1
376	 64.18	0	412325..413770	+	481	39995486	-	GSU0378	-	glycine dehydrogenase subunit 2
377	 70.49	+1	413770..414579	+	269	39995487	-	GSU0379	-	biotin/lipoate A/B protein ligase family protein
378	 66.89	+1	414576..415487	+	303	39995488	lipA	GSU0380	-	lipoyl synthase
379	 59.11	0	415484..415708	+	74	39995489	-	GSU0381	-	putative lipoprotein
380	 61.73	0	415717..416121	+	134	39995490	-	GSU0382	-	hypothetical protein
381	 62.00	0	416237..416665	+	142	39995491	-	GSU0383	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
382	 57.65	0	416747..417223	-	158	39995492	-	GSU0384	-	hypothetical protein
383	 65.20	0	417404..418288	+	294	39995493	-	GSU0385	-	NADH dehydrogenase subunit, putative
384	 63.77	0	418326..419015	-	229	39995494	radC	GSU0386	-	DNA repair protein RadC
385	 63.33	0	419107..419916	-	269	39995495	-	GSU0387	-	undecaprenol kinase, putative
386	 56.47	0	420116..420733	+	205	39995496	-	GSU0388	-	hypothetical protein
387	 60.48	0	420726..421727	+	333	39995497	-	GSU0389	-	phosphate transporter, putative
388	 59.83	0	421780..422262	-	160	39995498	-	GSU0390	-	hypothetical protein
389	 65.53	0	422509..423822	+	437	39995499	-	GSU0391	-	Outer membrane efflux family protein
390	 67.21	+1	423819..424931	+	370	39995500	-	GSU0392	-	RND family efflux transporter MFP subunit
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.