IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3256	 62.99	0	3594416..3595123	-	235	39998366	-	GSU3277	-	lysM domain-containing protein
3257	 62.77	0	3595125..3598025	-	966	39998367	-	GSU3278	-	hypothetical protein
3258	 61.67	0	3598194..3600035	+	613	39998368	uvrC	GSU3279	-	excinuclease ABC, C subunit
3259	 55.43	0	3600112..3600627	-	171	39998369	-	GSU3280	-	thioredoxin-related protein
3260	 55.76	0	3600648..3600977	-	109	39998370	trx	GSU3281	-	thioredoxin
3261	 61.78	0	3601183..3601857	+	224	39998371	-	GSU3282	-	siroheme synthase
3262	 59.56	0	3601854..3602669	+	271	39998372	-	GSU3283	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
3263	 60.38	0	3602688..3603992	+	434	39998373	hemA	GSU3284	-	glutamyl-tRNA reductase
3264	 62.90	0	3604051..3605007	+	318	39998374	hemC	GSU3285	-	porphobilinogen deaminase
3265	 65.18	0	3605124..3606671	+	515	39998375	-	GSU3286	-	uroporphyrinogen III synthase/methyltransferase
3266	 66.28	+1	3606699..3607475	+	258	39998376	-	GSU3287	-	TatD family hydrolase
3267	 63.80	0	3607503..3608270	+	255	39998377	-	GSU3288	-	thiF family protein
3268	 54.42	-1	3608359..3608856	+	165	39998378	-	GSU3289	-	hypothetical protein
3269	 64.68	0	3608974..3609174	-	66	39998379	-	GSU3290	-	hypothetical protein
3270	 63.53	0	3609341..3611383	-	680	39998380	hppA	GSU3291	-	membrane-bound proton-translocating pyrophosphatase
3271	 60.11	0	3611697..3612062	+	121	39998381	-	GSU3292	-	FUR family transcriptional regulator
3272	 55.19	-1	3612260..3612712	+	150	39998382	-	GSU3293	-	hypothetical protein
3273	 58.11	0	3612842..3614056	+	404	39998383	-	GSU3294	-	rubredoxin-oxygen oxidoreductase, putative
3274	 63.41	0	3614102..3615421	+	439	39998384	-	GSU3295	-	hypothetical protein
3275	 62.46	0	3615489..3616868	+	459	39998385	-	GSU3296	-	glycolate oxidase subunit GlcD, putative
3276	 63.74	0	3616956..3618221	+	421	39998386	-	GSU3297	-	iron-sulfur cluster-binding protein
3277	 54.08	-1	3618530..3619093	+	187	39998387	-	GSU3298	-	Cro/CI family transcriptional regulator
3278	 61.70	0	3619432..3621042	+	536	39998388	-	GSU3299	-	carboxyl transferase domain-containing protein
3279	 59.84	0	3621220..3623958	+	912	39998389	-	GSU3300	-	biotin-requiring enzyme subunit
3280	 54.87	-1	3624159..3624794	+	211	39998390	-	GSU3301	-	hypothetical protein
3281	 60.64	0	3624910..3626568	+	552	39998391	-	GSU3302	-	methylmalonyl-CoA mutase, putative
3282	 56.30	0	3626626..3627030	+	134	39998392	-	GSU3303	-	methylmalonyl-CoA epimerase
3283	 58.59	0	3627493..3628866	+	457	39998393	-	GSU3304	-	LamB porin family protein, putative
3284	 52.84	-1	3628992..3629273	+	93	39998394	-	GSU3305	-	hypothetical protein
3285	 59.29	0	3629453..3630970	+	505	39998395	-	GSU3306	-	hypothetical protein
3286	 60.97	0	3631136..3632452	+	438	39998396	hisZ	GSU3307	-	ATP phosphoribosyltransferase regulatory subunit
3287	 60.83	0	3632453..3633754	+	433	39998397	purA	GSU3308	-	adenylosuccinate synthetase
3288	 61.17	0	3634083..3634901	-	272	39998398	-	GSU3309	-	hypothetical protein
3289	 55.30	-1	3634910..3635173	-	87	39998399	-	GSU3310	-	hypothetical protein
3290	 58.47	0	3635189..3636091	+	300	39998400	-	GSU3311	-	hypothetical protein
3291	 61.74	0	3636130..3637083	-	317	39998401	hemH	GSU3312	-	ferrochelatase
3292	 65.30	0	3637191..3638798	-	535	39998402	-	GSU3313	-	thiolase, putative
3293	 61.95	0	3638936..3639952	-	338	39998403	-	GSU3314	-	putative lipoprotein
3294	 64.58	0	3640042..3641286	-	414	39998404	-	GSU3315	-	major facilitator family transporter
3295	 63.47	0	3641415..3642134	+	239	39998405	-	GSU3316	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
3296	 65.41	0	3642950..3644059	+	369	39998406	-	GSU3317	-	hypothetical protein
3297	 64.25	0	3644195..3645598	-	467	39998407	-	GSU3318	-	hypothetical protein
3298	 62.31	0	3645704..3646300	-	198	39998408	ppiA	GSU3319	-	peptidyl-prolyl cis-trans isomerase A
3299	 65.16	0	3646373..3646969	-	198	39998409	-	GSU3320	-	ribosomal protein L11 methyltransferase, putative
3300	 66.81	+1	3647128..3648537	+	469	39998410	-	GSU3321	-	phosphoglucomutase/phosphomannomutase family protein
3301	 57.23	0	3648635..3649588	+	317	39998411	corA-2	GSU3322	-	magnesium and cobalt transport protein CorA
3302	 64.33	0	3649590..3651773	+	727	39998412	ppk	GSU3323	-	polyphosphate kinase
3303	 64.16	0	3651999..3652637	-	212	39998413	-	GSU3324	-	Cro/CI family transcriptional regulator
3304	 63.04	0	3652846..3655659	+	937	39998414	uvrA	GSU3325	-	excinuclease ABC, A subunit
3305	 64.89	0	3655690..3656421	-	243	39998415	-	GSU3326	-	hypothetical protein
3306	 61.22	0	3656418..3656711	-	97	39998416	-	GSU3327	-	hypothetical protein
3307	 63.58	0	3656802..3657545	-	247	39998417	-	GSU3328	-	hypothetical protein
3308	 65.28	0	3657542..3658837	-	431	39998418	-	GSU3329	-	radical SAM domain-containing protein
3309	 65.78	0	3658912..3660036	-	374	39998419	-	GSU3330	-	Oye family NADH-dependent flavin oxidoreductase
3310	 64.38	0	3660079..3661521	-	480	39998420	pyk	GSU3331	-	pyruvate kinase
3311	 61.49	0	3661539..3661886	-	115	39998421	-	GSU3332	-	cytochrome c family protein, putative
3312	 64.29	0	3662036..3663046	-	336	161579496	-	GSU3333	-	3-deoxy-7-phosphoheptulonate synthase
3313	 60.95	0	3663224..3663538	+	104	39998423	-	GSU3334	-	cytochrome c family protein, putative
3314	 64.21	0	3663545..3663829	+	94	39998424	-	GSU3335	-	hypothetical protein
3315	 59.34	0	3663853..3664125	+	90	39998425	-	GSU3336	-	hypothetical protein
3316	 65.60	0	3664119..3664682	+	187	39998426	-	GSU3337	-	hypothetical protein
3317	 61.40	0	3664470..3664583	-	37	39998427	-	GSU3338	-	hypothetical protein
3318	 57.99	0	3664919..3665206	+	95	39998428	groES	GSU3339	-	co-chaperonin GroES
3319	 62.94	0	3665270..3666904	+	544	39998429	groEL	GSU3340	-	chaperonin GroEL
3320	 60.31	0	3667264..3669228	+	654	39998430	-	GSU3341	-	hypothetical protein
3321	 63.24	0	3669269..3670612	+	447	39998431	-	GSU3342	-	hypothetical protein
3322	 60.38	0	3670697..3672319	+	540	39998432	-	GSU3343	-	SpoVR-like family protein
3323	 59.03	0	3672332..3674635	+	767	39998433	-	GSU3344	-	hypothetical protein
3324	 63.69	0	3674668..3675036	+	122	39998434	-	GSU3345	-	hypothetical protein
3325	 60.39	0	3675042..3676874	-	610	39998435	-	GSU3346	-	potassium uptake protein, Kup system
3326	 65.57	0	3677009..3679381	+	790	39998436	-	GSU3347	-	U32 family peptidase
3327	 64.02	0	3679517..3680422	+	301	39998437	-	GSU3348	-	heat shock protein 33
3328	 66.23	+1	3680526..3681209	+	227	39998438	-	GSU3349	-	cyclase, putative
3329	 65.19	0	3681280..3682977	+	565	39998439	-	GSU3350	-	sensor histidine kinase/GGDEF domain-containing protein
3330	 61.45	0	3683067..3683564	+	165	39998440	-	GSU3351	-	hypothetical protein
3331	 64.60	0	3683584..3683970	+	128	39998441	-	GSU3352	-	hypothetical protein
3332	 67.12	+1	3684041..3684931	-	296	39998442	-	GSU3353	-	RNA pseudouridine synthase family protein
3333	 65.33	0	3684928..3685449	-	173	39998443	-	GSU3354	-	mutT/nudix family protein
3334	 56.25	0	3685436..3685579	+	47	39998444	-	GSU3355	-	hypothetical protein
3335	 62.86	0	3685627..3687228	+	533	39998445	-	GSU3356	-	GGDEF domain/HAMP domain-containing protein
3336	 62.56	0	3687303..3689687	+	794	39998446	-	GSU3357	-	sensory box histidine kinase
3337	 61.42	0	3689689..3690126	-	145	39998447	-	GSU3358	-	hypothetical protein
3338	 65.07	0	3690311..3691372	+	353	39998448	-	GSU3359	-	hypothetical protein
3339	 64.92	0	3691369..3692688	+	439	39998449	-	GSU3360	-	M16 family peptidase
3340	 64.34	0	3692660..3694207	-	515	39998450	-	GSU3361	-	transglutaminase domain-containing protein
3341	 61.99	0	3694218..3694559	-	113	39998451	-	GSU3362	-	hypothetical protein
3342	 58.73	0	3694820..3697111	+	763	39998452	-	GSU3363	-	sigma-54 dependent trancsriptional regulator
3343	 48.37	-2	3697200..3697505	+	101	39998453	-	GSU3364	-	hypothetical protein
3344	 60.03	0	3697619..3699064	-	481	39998454	cysS	GSU3365	-	cysteinyl-tRNA synthetase
3345	 62.46	0	3699097..3700761	-	554	39998455	glnS	GSU3366	-	glutaminyl-tRNA synthetase
3346	 63.71	0	3700792..3701265	-	157	39998456	ispF	GSU3367	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3347	 64.23	0	3701309..3702007	-	232	39998457	ispD	GSU3368	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
3348	 66.16	+1	3702160..3703548	-	462	39998458	selA	GSU3369	-	selenocysteine synthase
3349	 57.49	0	3703818..3704525	-	235	39998459	-	GSU3370	-	GntR family transcriptional regulator
3350	 62.39	0	3704800..3705570	+	256	39998460	-	GSU3371	-	AP endonuclease
3351	 61.33	0	3705606..3707048	-	480	39998461	-	GSU3372	-	cardiolipin synthetase, putative
3352	 64.88	0	3707306..3708652	+	448	39998462	sun	GSU3373	-	Sun protein
3353	 61.26	0	3708688..3709353	+	221	39998463	rpe	GSU3374	-	ribulose-phosphate 3-epimerase
3354	 62.21	0	3709465..3709980	+	171	39998464	-	GSU3375	-	mutT/nudix family protein
3355	 61.49	0	3710034..3710960	+	308	39998465	-	GSU3376	-	GGDEF/response regulator receiver domain-containing protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.