IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3199	 65.03	0	3525819..3531911	+	2030	39998309	-	GSU3219	-	fibronectin type III domain-containing protein
3200	 50.00	-1	3531992..3532093	+	33	39998310	-	GSU3220	-	hypothetical protein
3201	 60.25	0	3532306..3533100	+	264	39998311	-	GSU3221	-	cytochrome c family protein
3202	 61.10	0	3533249..3534487	+	412	39998312	-	GSU3222	-	NHL repeat-containing protein
3203	 64.80	0	3534509..3535096	+	195	39998313	-	GSU3223	-	cytochrome c family protein
3204	 59.96	0	3535172..3537139	+	655	39998314	-	GSU3224	-	hypothetical protein
3205	 64.75	0	3537164..3538261	+	365	39998315	-	GSU3225	-	NHL repeat-containing protein
3206	 64.12	0	3538273..3540003	+	576	39998316	-	GSU3226	-	cytochrome c family protein
3207	 63.29	0	3540430..3540843	+	137	39998317	-	GSU3227	-	hypothetical protein
3208	 63.24	0	3540862..3543837	+	991	39998318	-	GSU3228	-	cytochrome c family protein
3209	 63.19	0	3543991..3544680	-	229	39998319	-	GSU3229	-	LuxR family DNA-binding response regulator
3210	 62.24	0	3544670..3546226	-	518	39998320	-	GSU3230	-	sensory box histidine kinase
3211	 58.33	0	3546660..3546779	-	39	39998321	-	GSU3231	-	hypothetical protein
3212	 63.66	0	3546769..3547101	+	110	39998322	-	GSU3232	-	cytochrome c family protein, putative
3213	 62.55	0	3547120..3550323	+	1067	39998323	-	GSU3233	-	cytochrome c family protein
3214	 55.10	-1	3550468..3550614	+	48	39998324	-	GSU3234	-	hypothetical protein
3215	 60.08	0	3550599..3550856	-	85	39998325	rpmA	GSU3235	-	50S ribosomal protein L27
3216	 53.07	-1	3550937..3551245	-	102	39998326	rplU	GSU3236	-	50S ribosomal protein L21
3217	 39.47	-2	3551233..3551346	-	37	39998327	-	GSU3237	-	hypothetical protein
3218	 58.33	0	3551349..3551648	-	99	39998328	-	GSU3238	-	Rieske 2Fe-2S family protein
3219	 58.77	0	3551672..3553267	-	531	39998329	cafA	GSU3239	-	ribonuclease G
3220	 64.21	0	3553203..3555641	-	812	39998330	-	GSU3240	-	radical SAM domain-containing protein
3221	 54.50	-1	3555958..3556335	-	125	39998331	-	GSU3241	-	hypothetical protein
3222	 48.15	-2	3556109..3556216	+	35	39998332	-	GSU3242	-	hypothetical protein
3223	 64.52	0	3556304..3556675	-	123	39998333	-	GSU3243	-	hypothetical protein
3224	 61.87	0	3556672..3557088	-	138	39998334	-	GSU3244	-	hypothetical protein
3225	 64.39	0	3557188..3559425	-	745	39998335	-	GSU3245	-	DNA polymerase II, putative
3226	 57.76	0	3559499..3560104	-	201	39998336	-	GSU3246	-	thioredoxin peroxidase
3227	 63.80	0	3560212..3560943	-	243	39998337	-	GSU3247	-	iron-sulfur cluster-binding protein
3228	 59.66	0	3560987..3561343	-	118	39998338	-	GSU3248	-	hypothetical protein
3229	 46.88	-2	3561352..3561447	-	31	39998339	-	GSU3249	-	hypothetical protein
3230	 66.96	+1	3561440..3562807	+	455	39998340	pcnB	GSU3250	-	polyA polymerase
3231	 58.44	0	3562966..3563913	-	315	39998341	-	GSU3251	-	hypothetical protein
3232	 60.16	0	3564114..3565757	+	547	39998342	-	GSU3252	-	sensor histidine kinase
3233	 58.33	0	3565735..3566106	+	123	39998343	-	GSU3253	-	response regulator
3234	 61.41	0	3566149..3568659	+	836	39998344	-	GSU3254	-	phosphoglucomutase/phosphomannomutase family protein
3235	 64.11	0	3568660..3570849	+	729	39998345	-	GSU3255	-	hypothetical protein
3236	 62.48	0	3570860..3571885	+	341	39998346	galT	GSU3256	-	galactose-1-phosphate uridylyltransferase
3237	 63.78	0	3571890..3573344	+	484	39998347	glgA-2	GSU3257	-	glycogen synthase
3238	 56.55	0	3573348..3573515	+	55	39998348	-	GSU3258	-	hypothetical protein
3239	 59.84	0	3573587..3575110	-	507	39998349	-	GSU3259	-	cytochrome c family protein
3240	 62.10	0	3575462..3576535	+	357	39998350	-	GSU3260	-	phosphoserine aminotransferase, putative
3241	 61.81	0	3576650..3577102	+	150	39998351	-	GSU3261	-	response regulator
3242	 62.76	0	3577166..3579160	+	664	39998352	uvrB	GSU3262	-	excinuclease ABC subunit B
3243	 64.22	0	3579182..3579877	+	231	39998353	-	GSU3263	-	response regulator
3244	 64.30	0	3579874..3581100	+	408	39998354	-	GSU3264	-	hypothetical protein
3245	 62.24	0	3581132..3581809	+	225	39998355	-	GSU3265	-	sulfite reductase, assimilatory-type
3246	 67.44	+1	3581843..3585079	-	1078	39998356	-	GSU3266	-	DNA helicase II, putative
3247	 62.02	0	3585163..3585291	-	42	39998357	-	GSU3267	-	hypothetical protein
3248	 62.21	0	3585295..3587538	-	747	39998358	feoB-2	GSU3268	-	ferrous iron transport protein B
3249	 59.61	0	3587766..3588020	-	84	39998359	-	GSU3270	-	feoA family protein
3250	 63.05	0	3588092..3589501	-	469	39998360	-	GSU3271	-	hypothetical protein
3251	 55.37	0	3589489..3589665	-	58	39998361	-	GSU3272	-	hypothetical protein
3252	 60.10	0	3589678..3590727	-	349	39998362	-	GSU3273	-	hypothetical protein
3253	 57.21	0	3590746..3591168	-	140	39998363	-	GSU3274	-	cytochrome c family protein, putative
3254	 63.51	0	3591525..3592634	+	369	39998364	-	GSU3275	-	hypothetical protein
3255	 60.97	0	3592634..3594319	+	561	39998365	-	GSU3276	-	LysM domain-containing protein
3256	 62.99	0	3594416..3595123	-	235	39998366	-	GSU3277	-	lysM domain-containing protein
3257	 62.77	0	3595125..3598025	-	966	39998367	-	GSU3278	-	hypothetical protein
3258	 61.67	0	3598194..3600035	+	613	39998368	uvrC	GSU3279	-	excinuclease ABC, C subunit
3259	 55.43	0	3600112..3600627	-	171	39998369	-	GSU3280	-	thioredoxin-related protein
3260	 55.76	0	3600648..3600977	-	109	39998370	trx	GSU3281	-	thioredoxin
3261	 61.78	0	3601183..3601857	+	224	39998371	-	GSU3282	-	siroheme synthase
3262	 59.56	0	3601854..3602669	+	271	39998372	-	GSU3283	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
3263	 60.38	0	3602688..3603992	+	434	39998373	hemA	GSU3284	-	glutamyl-tRNA reductase
3264	 62.90	0	3604051..3605007	+	318	39998374	hemC	GSU3285	-	porphobilinogen deaminase
3265	 65.18	0	3605124..3606671	+	515	39998375	-	GSU3286	-	uroporphyrinogen III synthase/methyltransferase
3266	 66.28	+1	3606699..3607475	+	258	39998376	-	GSU3287	-	TatD family hydrolase
3267	 63.80	0	3607503..3608270	+	255	39998377	-	GSU3288	-	thiF family protein
3268	 54.42	-1	3608359..3608856	+	165	39998378	-	GSU3289	-	hypothetical protein
3269	 64.68	0	3608974..3609174	-	66	39998379	-	GSU3290	-	hypothetical protein
3270	 63.53	0	3609341..3611383	-	680	39998380	hppA	GSU3291	-	membrane-bound proton-translocating pyrophosphatase
3271	 60.11	0	3611697..3612062	+	121	39998381	-	GSU3292	-	FUR family transcriptional regulator
3272	 55.19	-1	3612260..3612712	+	150	39998382	-	GSU3293	-	hypothetical protein
3273	 58.11	0	3612842..3614056	+	404	39998383	-	GSU3294	-	rubredoxin-oxygen oxidoreductase, putative
3274	 63.41	0	3614102..3615421	+	439	39998384	-	GSU3295	-	hypothetical protein
3275	 62.46	0	3615489..3616868	+	459	39998385	-	GSU3296	-	glycolate oxidase subunit GlcD, putative
3276	 63.74	0	3616956..3618221	+	421	39998386	-	GSU3297	-	iron-sulfur cluster-binding protein
3277	 54.08	-1	3618530..3619093	+	187	39998387	-	GSU3298	-	Cro/CI family transcriptional regulator
3278	 61.70	0	3619432..3621042	+	536	39998388	-	GSU3299	-	carboxyl transferase domain-containing protein
3279	 59.84	0	3621220..3623958	+	912	39998389	-	GSU3300	-	biotin-requiring enzyme subunit
3280	 54.87	-1	3624159..3624794	+	211	39998390	-	GSU3301	-	hypothetical protein
3281	 60.64	0	3624910..3626568	+	552	39998391	-	GSU3302	-	methylmalonyl-CoA mutase, putative
3282	 56.30	0	3626626..3627030	+	134	39998392	-	GSU3303	-	methylmalonyl-CoA epimerase
3283	 58.59	0	3627493..3628866	+	457	39998393	-	GSU3304	-	LamB porin family protein, putative
3284	 52.84	-1	3628992..3629273	+	93	39998394	-	GSU3305	-	hypothetical protein
3285	 59.29	0	3629453..3630970	+	505	39998395	-	GSU3306	-	hypothetical protein
3286	 60.97	0	3631136..3632452	+	438	39998396	hisZ	GSU3307	-	ATP phosphoribosyltransferase regulatory subunit
3287	 60.83	0	3632453..3633754	+	433	39998397	purA	GSU3308	-	adenylosuccinate synthetase
3288	 61.17	0	3634083..3634901	-	272	39998398	-	GSU3309	-	hypothetical protein
3289	 55.30	-1	3634910..3635173	-	87	39998399	-	GSU3310	-	hypothetical protein
3290	 58.47	0	3635189..3636091	+	300	39998400	-	GSU3311	-	hypothetical protein
3291	 61.74	0	3636130..3637083	-	317	39998401	hemH	GSU3312	-	ferrochelatase
3292	 65.30	0	3637191..3638798	-	535	39998402	-	GSU3313	-	thiolase, putative
3293	 61.95	0	3638936..3639952	-	338	39998403	-	GSU3314	-	putative lipoprotein
3294	 64.58	0	3640042..3641286	-	414	39998404	-	GSU3315	-	major facilitator family transporter
3295	 63.47	0	3641415..3642134	+	239	39998405	-	GSU3316	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
3296	 65.41	0	3642950..3644059	+	369	39998406	-	GSU3317	-	hypothetical protein
3297	 64.25	0	3644195..3645598	-	467	39998407	-	GSU3318	-	hypothetical protein
3298	 62.31	0	3645704..3646300	-	198	39998408	ppiA	GSU3319	-	peptidyl-prolyl cis-trans isomerase A
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.