IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.71   STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3152	 58.64	0	3481200..3481685	+	161	39998262	-	GSU3172	-	hypothetical protein
3153	 60.47	0	3481696..3483180	+	494	39998263	-	GSU3173	-	hypothetical protein
3154	 55.56	0	3483262..3483747	+	161	39998264	hcP-2	GSU3174	-	hcp protein
3155	 46.05	-2	3483866..3484321	+	151	39998265	-	GSU3175	-	hypothetical protein
3156	 50.22	-1	3484376..3485293	+	305	39998266	-	GSU3176	-	lysM domain-containing protein
3157	 57.31	0	3485350..3487443	+	697	39998267	-	GSU3177	-	Rhs family protein
3158	 53.62	-1	3487475..3487750	+	91	39998268	-	GSU3178	-	hypothetical protein
3159	 53.66	-1	3487734..3487979	+	81	39998269	-	GSU3179	-	hypothetical protein
3160	 59.97	0	3488000..3489253	+	417	39998270	-	GSU3180	-	hypothetical protein
3161	 60.06	0	3489250..3490293	+	347	39998271	-	GSU3181	-	3-oxoacyl-(acyl carrier protein) synthase
3162	 51.44	-1	3490313..3490693	+	126	39998272	-	GSU3182	-	hypothetical protein
3163	 51.32	-1	3490745..3491122	+	125	39998273	-	GSU3183	-	hypothetical protein
3164	 55.14	-1	3491320..3493002	+	560	39998274	-	GSU3184	-	hypothetical protein
3165	 45.34	-2	3492999..3494222	+	407	39998275	-	GSU3185	-	hypothetical protein
3166	 62.00	0	3494464..3495471	+	335	39998276	-	GSU3186	-	hypothetical protein
3167	 57.81	0	3495602..3495793	+	63	39998277	-	GSU3187	-	ferredoxin family protein
3168	 61.01	0	3495860..3496018	+	52	39998278	-	GSU3188	-	rubredoxin
3169	 55.83	0	3496070..3496438	-	122	39998279	-	GSU3189	-	hypothetical protein
3170	 50.63	-1	3496433..3496669	+	78	39998280	-	GSU3190	-	twin arginine-targeting protein translocase
3171	 58.95	0	3496790..3498706	-	638	39998281	-	GSU3191	-	TPR domain-containing protein
3172	 61.56	0	3499180..3499629	+	149	39998282	-	GSU3192	-	HSP20 family protein
3173	 61.75	0	3499629..3502088	+	819	39998283	loN-3	GSU3193	-	ATP-dependent protease La
3174	 66.26	+1	3502085..3503071	+	328	39998284	thiL	GSU3194	-	thiamine monophosphate kinase
3175	 58.12	0	3503129..3504052	+	307	39998285	-	GSU3195	-	chemotaxis protein methyltransferase CheR,putative
3176	 63.95	0	3504112..3505398	+	428	39998286	-	GSU3196	-	methyl-accepting chemotaxis protein
3177	 63.07	0	3505395..3505811	+	138	39998287	-	GSU3197	-	purine-binding chemotaxis protein CheW, putative
3178	 59.02	0	3505828..3506193	+	121	39998288	cheY-7	GSU3198	-	chemotaxis protein CheY
3179	 66.13	+1	3506196..3507881	+	561	39998289	cheA-3	GSU3199	-	chemotaxis protein CheA
3180	 58.21	0	3507878..3508492	+	204	39998290	-	GSU3200	-	chemotaxis protein CheC
3181	 61.35	0	3508489..3508977	+	162	39998291	-	GSU3201	-	chemotaxis protein CheD, putative
3182	 62.48	0	3509017..3509829	+	270	39998292	-	GSU3202	-	hypothetical protein
3183	 61.59	0	3509921..3510649	+	242	39998293	-	GSU3203	-	outer membrane lipoprotein carrier protein LolA, putative
3184	 54.12	-1	3510670..3511155	+	161	39998294	-	GSU3204	-	nucleotide-binding protein
3185	 62.05	0	3511168..3512511	+	447	39998295	-	GSU3205	-	MiaB-like tRNA modifying enzyme YliG
3186	 58.33	0	3512703..3513122	+	139	39998296	-	GSU3206	-	dnaK suppressor protein, putative
3187	 65.50	0	3513216..3514757	-	513	39998297	gpmA	GSU3207	-	phosphoglyceromutase
3188	 65.15	0	3514776..3515237	-	153	39998298	-	GSU3208	-	hypothetical protein
3189	 61.87	0	3515275..3515670	-	131	39998299	-	GSU3209	-	iojap-related protein
3190	 63.29	0	3515660..3516310	-	216	39998300	nadD	GSU3210	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
3191	 62.85	0	3516342..3517598	-	418	39998301	proA	GSU3211	-	gamma-glutamyl phosphate reductase
3192	 65.78	0	3517870..3518991	-	373	39998302	proB	GSU3212	-	gamma-glutamyl kinase
3193	 64.60	0	3519000..3520016	-	338	39998303	obgE	GSU3213	-	GTPase ObgE
3194	 62.75	0	3520152..3520790	-	212	39998304	-	GSU3214	-	cytochrome c family protein
3195	 64.58	0	3521209..3521352	+	47	39998305	-	GSU3215	-	hypothetical protein
3196	 62.78	0	3521447..3522475	+	342	39998306	-	GSU3216	-	sensor histidine kinase, putative
3197	 60.82	0	3522478..3523983	+	501	39998307	-	GSU3217	-	sigma-54 dependent DNA-binding response regulator
3198	 62.02	0	3523993..3525435	+	480	39998308	-	GSU3218	-	cytochrome c family protein
3199	 65.03	0	3525819..3531911	+	2030	39998309	-	GSU3219	-	fibronectin type III domain-containing protein
3200	 50.00	-1	3531992..3532093	+	33	39998310	-	GSU3220	-	hypothetical protein
3201	 60.25	0	3532306..3533100	+	264	39998311	-	GSU3221	-	cytochrome c family protein
3202	 61.10	0	3533249..3534487	+	412	39998312	-	GSU3222	-	NHL repeat-containing protein
3203	 64.80	0	3534509..3535096	+	195	39998313	-	GSU3223	-	cytochrome c family protein
3204	 59.96	0	3535172..3537139	+	655	39998314	-	GSU3224	-	hypothetical protein
3205	 64.75	0	3537164..3538261	+	365	39998315	-	GSU3225	-	NHL repeat-containing protein
3206	 64.12	0	3538273..3540003	+	576	39998316	-	GSU3226	-	cytochrome c family protein
3207	 63.29	0	3540430..3540843	+	137	39998317	-	GSU3227	-	hypothetical protein
3208	 63.24	0	3540862..3543837	+	991	39998318	-	GSU3228	-	cytochrome c family protein
3209	 63.19	0	3543991..3544680	-	229	39998319	-	GSU3229	-	LuxR family DNA-binding response regulator
3210	 62.24	0	3544670..3546226	-	518	39998320	-	GSU3230	-	sensory box histidine kinase
3211	 58.33	0	3546660..3546779	-	39	39998321	-	GSU3231	-	hypothetical protein
3212	 63.66	0	3546769..3547101	+	110	39998322	-	GSU3232	-	cytochrome c family protein, putative
3213	 62.55	0	3547120..3550323	+	1067	39998323	-	GSU3233	-	cytochrome c family protein
3214	 55.10	-1	3550468..3550614	+	48	39998324	-	GSU3234	-	hypothetical protein
3215	 60.08	0	3550599..3550856	-	85	39998325	rpmA	GSU3235	-	50S ribosomal protein L27
3216	 53.07	-1	3550937..3551245	-	102	39998326	rplU	GSU3236	-	50S ribosomal protein L21
3217	 39.47	-2	3551233..3551346	-	37	39998327	-	GSU3237	-	hypothetical protein
3218	 58.33	0	3551349..3551648	-	99	39998328	-	GSU3238	-	Rieske 2Fe-2S family protein
3219	 58.77	0	3551672..3553267	-	531	39998329	cafA	GSU3239	-	ribonuclease G
3220	 64.21	0	3553203..3555641	-	812	39998330	-	GSU3240	-	radical SAM domain-containing protein
3221	 54.50	-1	3555958..3556335	-	125	39998331	-	GSU3241	-	hypothetical protein
3222	 48.15	-2	3556109..3556216	+	35	39998332	-	GSU3242	-	hypothetical protein
3223	 64.52	0	3556304..3556675	-	123	39998333	-	GSU3243	-	hypothetical protein
3224	 61.87	0	3556672..3557088	-	138	39998334	-	GSU3244	-	hypothetical protein
3225	 64.39	0	3557188..3559425	-	745	39998335	-	GSU3245	-	DNA polymerase II, putative
3226	 57.76	0	3559499..3560104	-	201	39998336	-	GSU3246	-	thioredoxin peroxidase
3227	 63.80	0	3560212..3560943	-	243	39998337	-	GSU3247	-	iron-sulfur cluster-binding protein
3228	 59.66	0	3560987..3561343	-	118	39998338	-	GSU3248	-	hypothetical protein
3229	 46.88	-2	3561352..3561447	-	31	39998339	-	GSU3249	-	hypothetical protein
3230	 66.96	+1	3561440..3562807	+	455	39998340	pcnB	GSU3250	-	polyA polymerase
3231	 58.44	0	3562966..3563913	-	315	39998341	-	GSU3251	-	hypothetical protein
3232	 60.16	0	3564114..3565757	+	547	39998342	-	GSU3252	-	sensor histidine kinase
3233	 58.33	0	3565735..3566106	+	123	39998343	-	GSU3253	-	response regulator
3234	 61.41	0	3566149..3568659	+	836	39998344	-	GSU3254	-	phosphoglucomutase/phosphomannomutase family protein
3235	 64.11	0	3568660..3570849	+	729	39998345	-	GSU3255	-	hypothetical protein
3236	 62.48	0	3570860..3571885	+	341	39998346	galT	GSU3256	-	galactose-1-phosphate uridylyltransferase
3237	 63.78	0	3571890..3573344	+	484	39998347	glgA-2	GSU3257	-	glycogen synthase
3238	 56.55	0	3573348..3573515	+	55	39998348	-	GSU3258	-	hypothetical protein
3239	 59.84	0	3573587..3575110	-	507	39998349	-	GSU3259	-	cytochrome c family protein
3240	 62.10	0	3575462..3576535	+	357	39998350	-	GSU3260	-	phosphoserine aminotransferase, putative
3241	 61.81	0	3576650..3577102	+	150	39998351	-	GSU3261	-	response regulator
3242	 62.76	0	3577166..3579160	+	664	39998352	uvrB	GSU3262	-	excinuclease ABC subunit B
3243	 64.22	0	3579182..3579877	+	231	39998353	-	GSU3263	-	response regulator
3244	 64.30	0	3579874..3581100	+	408	39998354	-	GSU3264	-	hypothetical protein
3245	 62.24	0	3581132..3581809	+	225	39998355	-	GSU3265	-	sulfite reductase, assimilatory-type
3246	 67.44	+1	3581843..3585079	-	1078	39998356	-	GSU3266	-	DNA helicase II, putative
3247	 62.02	0	3585163..3585291	-	42	39998357	-	GSU3267	-	hypothetical protein
3248	 62.21	0	3585295..3587538	-	747	39998358	feoB-2	GSU3268	-	ferrous iron transport protein B
3249	 59.61	0	3587766..3588020	-	84	39998359	-	GSU3270	-	feoA family protein
3250	 63.05	0	3588092..3589501	-	469	39998360	-	GSU3271	-	hypothetical protein
3251	 55.37	0	3589489..3589665	-	58	39998361	-	GSU3272	-	hypothetical protein
60.71	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.