IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3040	 62.13	0	3362756..3363637	-	293	39998150	-	GSU3059	-	radical SAM domain-containing protein
3041	 56.86	0	3363768..3364379	+	203	39998151	-	GSU3060	-	TetR family transcriptional regulator
3042	 62.43	0	3364460..3366652	+	730	39998152	shc-2	GSU3061	-	squalene-hopene cyclase
3043	 62.94	0	3366639..3368330	-	563	39998153	-	GSU3062	-	radical SAM domain-containing protein
3044	 62.15	0	3368488..3369639	-	383	39998154	ftsZ	GSU3063	-	cell division protein FtsZ
3045	 62.30	0	3369691..3370926	-	411	39998155	ftsA	GSU3064	-	cell division protein FtsA
3046	 63.06	0	3370942..3371772	-	276	39998156	ftsQ	GSU3065	-	cell division protein FtsQ
3047	 62.78	0	3371784..3372734	-	316	39998157	ddl	GSU3066	-	D-alanine--D-alanine ligase
3048	 64.82	0	3372764..3373630	-	288	39998158	murB	GSU3067	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3049	 62.20	0	3373685..3375073	-	462	39998159	murC	GSU3068	-	UDP-N-acetylmuramate--alanine ligase
3050	 63.65	0	3375076..3376170	-	364	39998160	murG	GSU3069	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3051	 59.06	0	3376167..3377231	-	354	39998161	-	GSU3070	-	cell cycle protein FtsW
3052	 65.42	0	3377285..3378643	-	452	39998162	murD	GSU3071	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
3053	 58.96	0	3378645..3379721	-	358	39998163	mraY	GSU3072	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3054	 62.48	0	3381149..3382678	-	509	39998164	murE	GSU3074	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
3055	 59.98	0	3382710..3384683	-	657	39998165	-	GSU3075	-	penicillin-binding protein
3056	 59.52	0	3384680..3385015	-	111	39998166	-	GSU3076	-	cell division protein FtsL, putative
3057	 63.03	0	3385043..3385978	-	311	39998167	mraW	GSU3077	-	S-adenosyl-methyltransferase MraW
3058	 55.77	0	3385982..3386458	-	158	39998168	-	GSU3078	-	cell division protein MraZ
3059	 59.54	0	3386899..3387249	-	116	39998169	-	GSU3079	-	hypothetical protein
3060	 59.02	0	3387299..3387847	-	182	39998170	-	GSU3080	-	hypothetical protein
3061	 62.39	0	3388257..3388607	-	116	39998171	-	GSU3081	-	hypothetical protein
3062	 56.20	0	3388646..3389008	+	120	39998172	-	GSU3082	-	ISGsu7, transposase OrfA
3063	 56.79	0	3389005..3389895	+	296	39998173	-	GSU3083	-	ISGsu7, transposase OrfB
3064	 56.49	0	3389874..3390335	-	153	39998174	-	GSU3084	-	hypothetical protein
3065	 60.46	0	3390382..3391509	-	375	39998175	-	GSU3085	-	hypothetical protein
3066	 63.86	0	3391779..3392954	-	391	39998176	-	GSU3086	-	hypothetical protein
3067	 61.35	0	3392958..3393785	-	275	39998177	-	GSU3087	-	Sir2 family transcriptional regulator
3068	 60.46	0	3393821..3394303	-	160	39998178	-	GSU3088	-	YbaK/EbsC protein
3069	 57.84	0	3394412..3396145	-	577	39998179	rpoD	GSU3089	-	RNA polymerase sigma factor RpoD
3070	 61.85	0	3396176..3397939	-	587	39998180	dnaG	GSU3090	-	DNA primase
3071	 60.52	0	3397917..3398453	-	178	39998181	-	GSU3091	-	CvpA family protein
3072	 61.45	0	3398549..3398989	-	146	39998182	-	GSU3092	-	YqeY family protein
3073	 48.99	-2	3399113..3399310	-	65	39998183	rpsU	GSU3093	-	30S ribosomal protein S21
3074	 55.05	-1	3399456..3399782	-	108	39998184	-	GSU3094	-	phosphoribosyl-ATP pyrophosphohydrolase
3075	 64.96	0	3399779..3400540	-	253	39998185	hisF	GSU3095	-	imidazole glycerol phosphate synthase subunit HisF
3076	 64.49	0	3400542..3401276	-	244	39998186	hisA	GSU3096	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
3077	 61.11	0	3401273..3401902	-	209	39998187	hisH	GSU3097	-	imidazole glycerol phosphate synthase subunit HisH
3078	 59.69	0	3401904..3402491	-	195	39998188	hisB	GSU3098	-	imidazoleglycerol-phosphate dehydratase
3079	 62.49	0	3402517..3403569	-	350	39998189	hisC	GSU3099	-	histidinol-phosphate aminotransferase
3080	 65.19	0	3403592..3404881	-	429	39998190	hisD	GSU3100	-	histidinol dehydrogenase
3081	 59.31	0	3404878..3405516	-	212	39998191	hisG	GSU3101	-	ATP phosphoribosyltransferase catalytic subunit
3082	 61.56	0	3405581..3406834	-	417	39998192	murA	GSU3102	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3083	 63.63	0	3406891..3407745	-	284	39998193	-	GSU3103	-	HemK family modification methylase
3084	 62.36	0	3407771..3408838	-	355	39998194	prfA	GSU3104	-	peptide chain release factor 1
3085	 59.75	0	3408858..3409811	-	317	39998195	-	GSU3105	-	hypothetical protein
3086	 64.23	0	3409808..3410506	-	232	39998196	thyX	GSU3106	-	FAD-dependent thymidylate synthase
3087	 53.54	-1	3410597..3410794	-	65	39998197	rpmE	GSU3107	-	50S ribosomal protein L31
3088	 58.65	0	3410940..3412187	-	415	39998198	rho	GSU3108	-	transcription termination factor Rho
3089	 61.89	0	3412645..3413418	+	257	39998199	-	GSU3109	-	IclR family transcriptional regulator
3090	 60.84	0	3413447..3413755	-	102	39998200	-	GSU3110	-	hypothetical protein
3091	 56.60	0	3413770..3414057	-	95	39998201	-	GSU3111	-	hypothetical protein
3092	 62.33	0	3414131..3416368	-	745	39998202	-	GSU3112	-	cell division protein FtsK, putative
3093	 62.67	0	3416422..3418023	-	533	39998203	-	GSU3113	-	metallo-beta-lactamase family protein
3094	 64.18	0	3418114..3418515	-	133	39998204	-	GSU3114	-	hypothetical protein
3095	 68.89	+1	3418522..3418701	-	59	39998205	-	GSU3115	-	hypothetical protein
3096	 64.68	0	3418703..3419407	-	234	39998206	-	GSU3116	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
3097	 64.40	0	3419688..3420128	+	146	39998207	ssb-2	GSU3117	-	single-strand binding protein
3098	 62.43	0	3420191..3420874	-	227	39998208	-	GSU3118	-	DNA-binding response regulator
3099	 65.12	0	3420871..3422421	-	516	39998209	-	GSU3119	-	sensor histidine kinase
3100	 63.10	0	3422490..3422966	+	158	39998210	-	GSU3120	-	hypothetical protein
3101	 60.43	0	3423035..3423499	+	154	39998211	-	GSU3121	-	EF hand domain-containing protein
3102	 59.36	0	3423529..3424596	-	355	39998212	-	GSU3122	-	metallo-beta-lactamase family protein
3103	 58.06	0	3424668..3425039	-	123	39998213	-	GSU3123	-	aldehyde ferredoxin oxidoreductase domain-containing protein
3104	 61.33	0	3425036..3425485	-	149	39998214	-	GSU3124	-	iron-sulfur cluster-binding protein
3105	 64.12	0	3425543..3426601	-	352	39998215	-	GSU3125	-	alcohol dehydrogenase, zinc-containing
3106	 63.58	0	3426711..3427715	-	334	39998216	-	GSU3126	-	aldo/keto reductase family oxidoreductase
3107	 63.58	0	3427883..3428821	+	312	39998217	-	GSU3127	-	AraC family transcriptional regulator
3108	 56.28	0	3428934..3429116	+	60	39998218	-	GSU3128	-	hypothetical protein
3109	 66.00	0	3429286..3430644	+	452	39998219	-	GSU3129	-	MATE efflux family protein
3110	 64.71	0	3430691..3431353	-	220	39998220	-	GSU3130	-	putative lipoprotein
3111	 66.78	+1	3431433..3434960	-	1175	39998221	-	GSU3131	-	hypothetical protein
3112	 61.40	0	3435206..3435490	-	94	39998222	huP-2	GSU3132	-	DNA-binding protein HU
3113	 61.23	0	3435686..3438076	-	796	39998223	-	GSU3133	-	1A family penicillin-binding protein
3114	 64.24	0	3438253..3439281	+	342	39998224	-	GSU3134	-	hypothetical protein
3115	 61.49	0	3439285..3439767	-	160	39998225	lspA	GSU3135	-	lipoprotein signal peptidase
3116	 63.82	0	3439773..3442544	-	923	39998226	ileS	GSU3136	-	isoleucyl-tRNA synthetase
3117	 65.48	0	3442747..3444522	+	591	39998227	-	GSU3137	-	cytochrome c family protein
3118	 61.99	0	3444551..3446005	+	484	39998228	-	GSU3138	-	sensor histidine kinase/response regulator
3119	 60.31	0	3446013..3446861	-	282	39998229	-	GSU3139	-	hypothetical protein
3120	 66.43	+1	3446890..3448962	-	690	39998230	-	GSU3140	-	peptidase, M1 family protein
3121	 66.04	0	3449070..3449546	-	158	39998231	-	GSU3141	-	hypothetical protein
3122	 62.35	0	3449646..3450665	-	339	39998232	-	GSU3142	-	3-deoxy-7-phosphoheptulonate synthase
3123	 61.38	0	3451151..3451585	+	144	39998233	-	GSU3143	-	peptidyl-prolyl cis-trans isomerase, FKBP-type, putative
3124	 64.43	0	3451680..3452888	+	402	39998234	-	GSU3144	-	hypothetical protein
3125	 64.60	0	3453011..3453445	-	144	39998235	-	GSU3145	-	MOSC domain-containing protein
3126	 62.59	0	3453478..3454458	-	326	39998236	-	GSU3146	-	molybdenum cofactor biosynthesis protein A, putative
3127	 61.18	0	3454545..3455054	-	169	39998237	mobB	GSU3147	-	molybdopterin-guanine dinucleotide biosynthesis protein MobB
3128	 63.29	0	3455690..3457705	-	671	39998238	-	GSU3148	-	sensor histidine kinase
3129	 64.17	0	3457683..3457802	-	39	39998239	-	GSU3149	-	hypothetical protein
3130	 66.67	+1	3457827..3458321	-	164	39998240	-	GSU3150	-	HPP family protein
3131	 66.67	+1	3458395..3459048	-	217	39998241	-	GSU3151	-	hypothetical protein
3132	 67.11	+1	3459198..3459653	-	151	39998242	-	GSU3152	-	sensory box protein
3133	 65.28	0	3459731..3460738	-	335	39998243	-	GSU3153	-	iron-sulfur cluster-binding protein
3134	 62.12	0	3460814..3462286	-	490	39998244	-	GSU3154	-	cytochrome c nitrite reductase, catalytic subunit NrfA, putative
3135	 66.67	+1	3462332..3462736	-	134	39998245	-	GSU3155	-	cytochrome c nitrite reductase, small subunit NrfH, putative
3136	 59.47	0	3463071..3464168	+	365	39998246	-	GSU3156	-	methyl-accepting chemotaxis protein, putative
3137	 66.54	+1	3464329..3465129	+	266	39998247	-	GSU3157	-	alpha/beta fold family hydrolase
3138	 66.02	0	3465190..3466116	-	308	39998248	cysM	GSU3158	-	cysteine synthase B
3139	 69.01	+1	3466266..3466820	+	184	39998249	-	GSU3159	-	mutT/nudix family protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.