IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3016	 60.52	0	3342011..3342433	-	140	39998126	-	GSU3035	-	hypothetical protein
3017	 55.63	0	3342430..3342864	-	144	39998127	fliS	GSU3036	-	flagellar protein FliS
3018	 58.01	0	3342898..3344307	-	469	39998128	fliD	GSU3037	-	flagellar hook-associated protein 2
3019	 65.34	0	3344677..3345507	-	276	39998129	fliC	GSU3038	-	flagellin FliC
3020	 50.00	-1	3345608..3345811	+	67	39998130	-	GSU3039	-	hypothetical protein
3021	 59.17	0	3345798..3346277	-	159	39998131	-	GSU3040	-	flagellar assembly protein FliW
3022	 54.58	-1	3346282..3346521	-	79	39998132	csrA	GSU3041	-	carbon storage regulator
3023	 59.42	0	3346545..3347441	-	298	39998133	flgL	GSU3042	-	flagellar hook-associated protein FlgL
3024	 61.30	0	3347451..3348884	-	477	39998134	flgK	GSU3043	-	flagellar hook-associated protein FlgK
3025	 63.62	0	3348886..3349377	-	163	39998135	-	GSU3044	-	hypothetical protein
3026	 64.24	0	3349396..3349683	-	95	39998136	flgM	GSU3045	-	negative regulator of flagellin synthesis FlgM
3027	 64.30	0	3349686..3350066	-	126	39998137	-	GSU3046	-	flagellar protein FlgJ-like protein
3028	 62.96	0	3350209..3351315	-	368	39998138	flgI	GSU3047	-	flagellar basal body P-ring protein
3029	 61.71	0	3351462..3352127	-	221	39998139	flgH	GSU3048	-	flagellar L-ring protein FlgH
3030	 50.83	-1	3352126..3352245	+	39	39998140	-	GSU3049	-	hypothetical protein
3031	 63.86	0	3352242..3352988	-	248	39998141	-	GSU3050	-	flagella basal body P-ring formation protein flgA, putative
3032	 63.24	0	3352996..3353784	-	262	39998142	flgG	GSU3051	-	flagellar basal body rod protein FlgG
3033	 60.77	0	3353883..3354611	-	242	39998143	flgG-2	GSU3052	-	flagellar basal-body rod protein FlgG
3034	 59.10	0	3354638..3355390	-	250	39998144	fliA	GSU3053	-	RNA polymerase sigma factor for flagellar operon
3035	 61.18	0	3355387..3356316	-	309	39998145	-	GSU3054	-	ParA family protein
3036	 63.35	0	3356313..3357638	-	441	39998146	-	GSU3055	-	flagellar biosynthetic protein FlhF, putative
3037	 62.31	0	3357658..3359748	-	696	39998147	flhA	GSU3056	-	flagellar biosynthesis protein FlhA
3038	 66.03	0	3360147..3361559	-	470	39998148	gltA	GSU3057	-	putative oxidoreductase
3039	 64.76	0	3361556..3362392	-	278	39998149	-	GSU3058	-	ferredoxin--NADP(+) reductase subunit alpha
3040	 62.13	0	3362756..3363637	-	293	39998150	-	GSU3059	-	radical SAM domain-containing protein
3041	 56.86	0	3363768..3364379	+	203	39998151	-	GSU3060	-	TetR family transcriptional regulator
3042	 62.43	0	3364460..3366652	+	730	39998152	shc-2	GSU3061	-	squalene-hopene cyclase
3043	 62.94	0	3366639..3368330	-	563	39998153	-	GSU3062	-	radical SAM domain-containing protein
3044	 62.15	0	3368488..3369639	-	383	39998154	ftsZ	GSU3063	-	cell division protein FtsZ
3045	 62.30	0	3369691..3370926	-	411	39998155	ftsA	GSU3064	-	cell division protein FtsA
3046	 63.06	0	3370942..3371772	-	276	39998156	ftsQ	GSU3065	-	cell division protein FtsQ
3047	 62.78	0	3371784..3372734	-	316	39998157	ddl	GSU3066	-	D-alanine--D-alanine ligase
3048	 64.82	0	3372764..3373630	-	288	39998158	murB	GSU3067	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3049	 62.20	0	3373685..3375073	-	462	39998159	murC	GSU3068	-	UDP-N-acetylmuramate--alanine ligase
3050	 63.65	0	3375076..3376170	-	364	39998160	murG	GSU3069	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
3051	 59.06	0	3376167..3377231	-	354	39998161	-	GSU3070	-	cell cycle protein FtsW
3052	 65.42	0	3377285..3378643	-	452	39998162	murD	GSU3071	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
3053	 58.96	0	3378645..3379721	-	358	39998163	mraY	GSU3072	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3054	 62.48	0	3381149..3382678	-	509	39998164	murE	GSU3074	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
3055	 59.98	0	3382710..3384683	-	657	39998165	-	GSU3075	-	penicillin-binding protein
3056	 59.52	0	3384680..3385015	-	111	39998166	-	GSU3076	-	cell division protein FtsL, putative
3057	 63.03	0	3385043..3385978	-	311	39998167	mraW	GSU3077	-	S-adenosyl-methyltransferase MraW
3058	 55.77	0	3385982..3386458	-	158	39998168	-	GSU3078	-	cell division protein MraZ
3059	 59.54	0	3386899..3387249	-	116	39998169	-	GSU3079	-	hypothetical protein
3060	 59.02	0	3387299..3387847	-	182	39998170	-	GSU3080	-	hypothetical protein
3061	 62.39	0	3388257..3388607	-	116	39998171	-	GSU3081	-	hypothetical protein
3062	 56.20	0	3388646..3389008	+	120	39998172	-	GSU3082	-	ISGsu7, transposase OrfA
3063	 56.79	0	3389005..3389895	+	296	39998173	-	GSU3083	-	ISGsu7, transposase OrfB
3064	 56.49	0	3389874..3390335	-	153	39998174	-	GSU3084	-	hypothetical protein
3065	 60.46	0	3390382..3391509	-	375	39998175	-	GSU3085	-	hypothetical protein
3066	 63.86	0	3391779..3392954	-	391	39998176	-	GSU3086	-	hypothetical protein
3067	 61.35	0	3392958..3393785	-	275	39998177	-	GSU3087	-	Sir2 family transcriptional regulator
3068	 60.46	0	3393821..3394303	-	160	39998178	-	GSU3088	-	YbaK/EbsC protein
3069	 57.84	0	3394412..3396145	-	577	39998179	rpoD	GSU3089	-	RNA polymerase sigma factor RpoD
3070	 61.85	0	3396176..3397939	-	587	39998180	dnaG	GSU3090	-	DNA primase
3071	 60.52	0	3397917..3398453	-	178	39998181	-	GSU3091	-	CvpA family protein
3072	 61.45	0	3398549..3398989	-	146	39998182	-	GSU3092	-	YqeY family protein
3073	 48.99	-2	3399113..3399310	-	65	39998183	rpsU	GSU3093	-	30S ribosomal protein S21
3074	 55.05	-1	3399456..3399782	-	108	39998184	-	GSU3094	-	phosphoribosyl-ATP pyrophosphohydrolase
3075	 64.96	0	3399779..3400540	-	253	39998185	hisF	GSU3095	-	imidazole glycerol phosphate synthase subunit HisF
3076	 64.49	0	3400542..3401276	-	244	39998186	hisA	GSU3096	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
3077	 61.11	0	3401273..3401902	-	209	39998187	hisH	GSU3097	-	imidazole glycerol phosphate synthase subunit HisH
3078	 59.69	0	3401904..3402491	-	195	39998188	hisB	GSU3098	-	imidazoleglycerol-phosphate dehydratase
3079	 62.49	0	3402517..3403569	-	350	39998189	hisC	GSU3099	-	histidinol-phosphate aminotransferase
3080	 65.19	0	3403592..3404881	-	429	39998190	hisD	GSU3100	-	histidinol dehydrogenase
3081	 59.31	0	3404878..3405516	-	212	39998191	hisG	GSU3101	-	ATP phosphoribosyltransferase catalytic subunit
3082	 61.56	0	3405581..3406834	-	417	39998192	murA	GSU3102	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3083	 63.63	0	3406891..3407745	-	284	39998193	-	GSU3103	-	HemK family modification methylase
3084	 62.36	0	3407771..3408838	-	355	39998194	prfA	GSU3104	-	peptide chain release factor 1
3085	 59.75	0	3408858..3409811	-	317	39998195	-	GSU3105	-	hypothetical protein
3086	 64.23	0	3409808..3410506	-	232	39998196	thyX	GSU3106	-	FAD-dependent thymidylate synthase
3087	 53.54	-1	3410597..3410794	-	65	39998197	rpmE	GSU3107	-	50S ribosomal protein L31
3088	 58.65	0	3410940..3412187	-	415	39998198	rho	GSU3108	-	transcription termination factor Rho
3089	 61.89	0	3412645..3413418	+	257	39998199	-	GSU3109	-	IclR family transcriptional regulator
3090	 60.84	0	3413447..3413755	-	102	39998200	-	GSU3110	-	hypothetical protein
3091	 56.60	0	3413770..3414057	-	95	39998201	-	GSU3111	-	hypothetical protein
3092	 62.33	0	3414131..3416368	-	745	39998202	-	GSU3112	-	cell division protein FtsK, putative
3093	 62.67	0	3416422..3418023	-	533	39998203	-	GSU3113	-	metallo-beta-lactamase family protein
3094	 64.18	0	3418114..3418515	-	133	39998204	-	GSU3114	-	hypothetical protein
3095	 68.89	+1	3418522..3418701	-	59	39998205	-	GSU3115	-	hypothetical protein
3096	 64.68	0	3418703..3419407	-	234	39998206	-	GSU3116	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
3097	 64.40	0	3419688..3420128	+	146	39998207	ssb-2	GSU3117	-	single-strand binding protein
3098	 62.43	0	3420191..3420874	-	227	39998208	-	GSU3118	-	DNA-binding response regulator
3099	 65.12	0	3420871..3422421	-	516	39998209	-	GSU3119	-	sensor histidine kinase
3100	 63.10	0	3422490..3422966	+	158	39998210	-	GSU3120	-	hypothetical protein
3101	 60.43	0	3423035..3423499	+	154	39998211	-	GSU3121	-	EF hand domain-containing protein
3102	 59.36	0	3423529..3424596	-	355	39998212	-	GSU3122	-	metallo-beta-lactamase family protein
3103	 58.06	0	3424668..3425039	-	123	39998213	-	GSU3123	-	aldehyde ferredoxin oxidoreductase domain-containing protein
3104	 61.33	0	3425036..3425485	-	149	39998214	-	GSU3124	-	iron-sulfur cluster-binding protein
3105	 64.12	0	3425543..3426601	-	352	39998215	-	GSU3125	-	alcohol dehydrogenase, zinc-containing
3106	 63.58	0	3426711..3427715	-	334	39998216	-	GSU3126	-	aldo/keto reductase family oxidoreductase
3107	 63.58	0	3427883..3428821	+	312	39998217	-	GSU3127	-	AraC family transcriptional regulator
3108	 56.28	0	3428934..3429116	+	60	39998218	-	GSU3128	-	hypothetical protein
3109	 66.00	0	3429286..3430644	+	452	39998219	-	GSU3129	-	MATE efflux family protein
3110	 64.71	0	3430691..3431353	-	220	39998220	-	GSU3130	-	putative lipoprotein
3111	 66.78	+1	3431433..3434960	-	1175	39998221	-	GSU3131	-	hypothetical protein
3112	 61.40	0	3435206..3435490	-	94	39998222	huP-2	GSU3132	-	DNA-binding protein HU
3113	 61.23	0	3435686..3438076	-	796	39998223	-	GSU3133	-	1A family penicillin-binding protein
3114	 64.24	0	3438253..3439281	+	342	39998224	-	GSU3134	-	hypothetical protein
3115	 61.49	0	3439285..3439767	-	160	39998225	lspA	GSU3135	-	lipoprotein signal peptidase
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.