IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2946	 62.11	0	3261189..3261737	-	182	39998056	-	GSU2965	-	hypothetical protein
2947	 58.56	0	3261759..3261980	+	73	39998057	-	GSU2966	-	hypothetical protein
2948	 60.16	0	3262124..3262615	+	163	39998058	-	GSU2967	-	hypothetical protein
2949	 62.45	0	3262848..3263108	+	86	39998059	-	GSU2968	-	hypothetical protein
2950	 60.97	0	3263301..3264248	+	315	39998060	-	GSU2969	-	sensory box/GGDEF family protein
2951	 59.11	0	3264290..3264580	+	96	39998061	-	GSU2970	-	hypothetical protein
2952	 61.95	0	3264683..3264979	+	98	39998062	-	GSU2972	-	hypothetical protein
2953	 63.82	0	3264691..3264936	-	81	39998063	-	GSU2971	-	hypothetical protein
2954	 58.70	0	3265018..3265431	-	137	39998064	-	GSU2973	-	putative lipoprotein
2955	 66.39	+1	3265450..3267267	-	605	39998065	-	GSU2974	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
2956	 65.21	0	3267264..3268916	-	550	39998066	-	GSU2975	-	putative manganese-dependent inorganic pyrophosphatase
2957	 61.47	0	3269006..3269602	+	198	39998067	-	GSU2976	-	DedA family protein
2958	 60.78	0	3269687..3270331	-	214	39998068	-	GSU2977	-	putative translaldolase
2959	 59.84	0	3270375..3270623	-	82	39998069	-	GSU2978	-	hypothetical protein
2960	 63.01	0	3270642..3271133	-	163	39998070	folK	GSU2979	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2961	 60.00	0	3271194..3271613	-	139	39998071	-	GSU2980	-	nickel responsive regulator
2962	 70.69	+1	3271715..3272584	-	289	39998072	-	GSU2981	-	TonB-dependent receptor, putative
2963	 61.48	0	3272590..3274689	-	699	39998073	-	GSU2982	-	TonB dependent receptor, putative
2964	 60.34	0	3275022..3275558	-	178	39998074	-	GSU2983	-	hypothetical protein
2965	 62.76	0	3275601..3276419	-	272	39998075	-	GSU2984	-	ABC transporter, permease protein
2966	 66.67	+1	3276434..3277186	-	250	39998076	-	GSU2985	-	ABC transporter, ATP-binding protein
2967	 65.14	0	3277177..3278157	-	326	39998077	-	GSU2986	-	adhesion lipoprotein
2968	 61.90	0	3278158..3278577	-	139	39998078	-	GSU2987	-	FUR family transcriptional regulator
2969	 66.30	+1	3279233..3280603	+	456	39998079	-	GSU2988	-	hypothetical protein
2970	 69.43	+1	3280633..3281718	-	361	39998080	-	GSU2989	-	L-threonine-O-3-phosphate decarboxylase, putative
2971	 67.81	+1	3281715..3282677	-	320	39998081	cobD	GSU2990	-	cobalamin biosynthesis protein CobD
2972	 63.52	0	3282674..3284707	-	677	39998082	-	GSU2991	-	sensor histidine kinase
2973	 65.04	0	3284732..3286330	-	532	39998083	cobQ	GSU2992	-	cobyric acid synthase
2974	 66.76	+1	3287136..3288191	-	351	39998084	-	GSU2993	-	cobalamin biosynthesis protein CbiG, putative
2975	 69.31	+1	3288222..3289016	-	264	39998085	cobM	GSU2994	-	precorrin-4 C11-methyltransferase
2976	 64.70	0	3289047..3289757	-	236	39998086	cobI	GSU2995	-	precorrin-2 C20-methyltransferase
2977	 63.55	0	3289754..3290971	-	405	39998087	cobL	GSU2996	-	precorrin-6y c5,15-methyltransferase
2978	 68.69	+1	3291016..3292104	-	362	39998088	cbiD	GSU2997	-	cobalamin biosynthesis protein CbiD
2979	 64.09	0	3292111..3292653	-	180	39998089	-	GSU2998	-	nitroimidazole resistance protein, putative
2980	 68.07	+1	3292653..3293294	-	213	39998090	cobH	GSU2999	-	precorrin-8X methylmutase
2981	 65.62	0	3293294..3293677	-	127	39998091	-	GSU3000	-	cbiX protein
2982	 65.12	0	3293679..3294518	-	279	39998092	-	GSU3001	-	cobalt ABC transporter, ATP-binding protein
2983	 67.86	+1	3294515..3295270	-	251	39998093	-	GSU3002	-	cobalt ABC transporter, permease protein
2984	 61.82	0	3295267..3295782	-	171	39998094	-	GSU3003	-	hypothetical protein
2985	 66.46	+1	3295769..3296734	-	321	161579497	-	GSU3004	-	cobalt transport protein CbiM
2986	 67.05	+1	3297117..3298424	-	435	39998096	thiC-2	GSU3005	-	thiamine biosynthesis protein ThiC
2987	 66.45	+1	3298421..3299815	-	464	39998097	cobB	GSU3006	-	cobyrinic acid a,c-diamide synthase
2988	 63.76	0	3299819..3300472	-	217	39998098	-	GSU3007	-	phosphoglycerate mutase family protein, putative
2989	 68.02	+1	3300552..3301292	-	246	39998099	cobS	GSU3008	-	cobalamin 5'-phosphate synthase
2990	 64.59	0	3301289..3302347	-	352	39998100	cobT	GSU3009	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2991	 64.93	0	3302370..3302888	-	172	39998101	cobU	GSU3010	-	bifunctional cobalamin biosynthesis protein CobU
2992	 56.25	0	3302867..3303058	-	63	39998102	-	GSU3011	-	hypothetical protein
2993	 53.94	-1	3303119..3303283	+	54	39998103	-	GSU3012	-	hypothetical protein
2994	 62.80	0	3303260..3303880	-	206	39998104	-	GSU3013	-	GTPase EngB
2995	 57.43	0	3303989..3304897	+	302	39998105	-	GSU3014	-	HD domain-containing protein
2996	 59.84	0	3305088..3305468	-	126	39998106	-	GSU3015	-	flagellin FlaG, putative
2997	 62.65	0	3305627..3311104	-	1825	39998107	-	GSU3016	-	hypothetical protein
2998	 55.38	0	3311632..3311826	+	64	39998108	-	GSU3017	-	hypothetical protein
2999	 42.16	-2	3311879..3312637	+	252	39998109	-	GSU3018	-	hypothetical protein
3000	 49.11	-2	3312678..3314636	+	652	39998110	-	GSU3019	-	dehydrogenase, E1 component, alpha and beta subunits
3001	 49.37	-2	3314633..3315748	+	371	39998111	-	GSU3020	-	hexapeptide transferase family protein
3002	 54.77	-1	3315770..3316954	+	394	39998112	-	GSU3021	-	DegT/DnrJ/EryC1/StrS family protein
3003	 52.62	-1	3316979..3320353	+	1124	39998113	-	GSU3022	-	hypothetical protein
3004	 60.34	0	3320350..3327555	+	2401	39998114	-	GSU3023	-	glycosyl transferase, group 1/2 family protein
3005	 66.35	+1	3327458..3329374	+	638	39998115	-	GSU3024	-	hypothetical protein
3006	 66.09	+1	3329371..3330924	+	517	39998116	-	GSU3025	-	heptosyltransferase family protein
3007	 57.35	0	3330990..3331268	+	92	39998117	-	GSU3026	-	flagellar protein FlbD, putative
3008	 59.08	0	3331289..3332053	+	254	39998118	-	GSU3027	-	chemotaxis MotA protein
3009	 60.67	0	3332063..3332863	+	266	39998119	motB	GSU3028	-	chemotaxis MotB protein
3010	 64.17	0	3332939..3336349	-	1136	39998120	-	GSU3029	-	2-acyl-glycerophospho-ethanolamine acyltransferase
3011	 65.13	0	3336366..3337343	-	325	39998121	-	GSU3030	-	hypothetical protein
3012	 61.85	0	3337484..3339019	+	511	39998122	-	GSU3031	-	sigma-54 dependent transcriptional regulator
3013	 64.07	0	3339016..3340593	-	525	39998123	-	GSU3032	-	hypothetical protein
3014	 62.56	0	3340671..3341474	-	267	39998124	-	GSU3033	-	hypothetical protein
3015	 62.28	0	3341490..3341945	-	151	39998125	-	GSU3034	-	hypothetical protein
3016	 60.52	0	3342011..3342433	-	140	39998126	-	GSU3035	-	hypothetical protein
3017	 55.63	0	3342430..3342864	-	144	39998127	fliS	GSU3036	-	flagellar protein FliS
3018	 58.01	0	3342898..3344307	-	469	39998128	fliD	GSU3037	-	flagellar hook-associated protein 2
3019	 65.34	0	3344677..3345507	-	276	39998129	fliC	GSU3038	-	flagellin FliC
3020	 50.00	-1	3345608..3345811	+	67	39998130	-	GSU3039	-	hypothetical protein
3021	 59.17	0	3345798..3346277	-	159	39998131	-	GSU3040	-	flagellar assembly protein FliW
3022	 54.58	-1	3346282..3346521	-	79	39998132	csrA	GSU3041	-	carbon storage regulator
3023	 59.42	0	3346545..3347441	-	298	39998133	flgL	GSU3042	-	flagellar hook-associated protein FlgL
3024	 61.30	0	3347451..3348884	-	477	39998134	flgK	GSU3043	-	flagellar hook-associated protein FlgK
3025	 63.62	0	3348886..3349377	-	163	39998135	-	GSU3044	-	hypothetical protein
3026	 64.24	0	3349396..3349683	-	95	39998136	flgM	GSU3045	-	negative regulator of flagellin synthesis FlgM
3027	 64.30	0	3349686..3350066	-	126	39998137	-	GSU3046	-	flagellar protein FlgJ-like protein
3028	 62.96	0	3350209..3351315	-	368	39998138	flgI	GSU3047	-	flagellar basal body P-ring protein
3029	 61.71	0	3351462..3352127	-	221	39998139	flgH	GSU3048	-	flagellar L-ring protein FlgH
3030	 50.83	-1	3352126..3352245	+	39	39998140	-	GSU3049	-	hypothetical protein
3031	 63.86	0	3352242..3352988	-	248	39998141	-	GSU3050	-	flagella basal body P-ring formation protein flgA, putative
3032	 63.24	0	3352996..3353784	-	262	39998142	flgG	GSU3051	-	flagellar basal body rod protein FlgG
3033	 60.77	0	3353883..3354611	-	242	39998143	flgG-2	GSU3052	-	flagellar basal-body rod protein FlgG
3034	 59.10	0	3354638..3355390	-	250	39998144	fliA	GSU3053	-	RNA polymerase sigma factor for flagellar operon
3035	 61.18	0	3355387..3356316	-	309	39998145	-	GSU3054	-	ParA family protein
3036	 63.35	0	3356313..3357638	-	441	39998146	-	GSU3055	-	flagellar biosynthetic protein FlhF, putative
3037	 62.31	0	3357658..3359748	-	696	39998147	flhA	GSU3056	-	flagellar biosynthesis protein FlhA
3038	 66.03	0	3360147..3361559	-	470	39998148	gltA	GSU3057	-	putative oxidoreductase
3039	 64.76	0	3361556..3362392	-	278	39998149	-	GSU3058	-	ferredoxin--NADP(+) reductase subunit alpha
3040	 62.13	0	3362756..3363637	-	293	39998150	-	GSU3059	-	radical SAM domain-containing protein
3041	 56.86	0	3363768..3364379	+	203	39998151	-	GSU3060	-	TetR family transcriptional regulator
3042	 62.43	0	3364460..3366652	+	730	39998152	shc-2	GSU3061	-	squalene-hopene cyclase
3043	 62.94	0	3366639..3368330	-	563	39998153	-	GSU3062	-	radical SAM domain-containing protein
3044	 62.15	0	3368488..3369639	-	383	39998154	ftsZ	GSU3063	-	cell division protein FtsZ
3045	 62.30	0	3369691..3370926	-	411	39998155	ftsA	GSU3064	-	cell division protein FtsA
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.