IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2894	 60.24	0	3209979..3210818	-	279	39998004	-	GSU2913	-	cytochrome c family protein
2895	 62.70	0	3210885..3213581	-	898	39998005	-	GSU2914	-	NHL repeat-containing protein
2896	 57.42	0	3213944..3215317	-	457	39998006	-	GSU2915	-	sigma-54 dependent DNA-binding response regulator
2897	 59.90	0	3215428..3216891	-	487	39998007	-	GSU2916	-	sensor histidine kinase
2898	 61.08	0	3217011..3217493	-	160	39998008	-	GSU2917	-	hypothetical protein
2899	 64.02	0	3217554..3218498	-	314	39998009	-	GSU2918	-	transketolase, C-terminal subunit
2900	 62.95	0	3218541..3219374	-	277	39998010	-	GSU2919	-	transketolase, N-terminal subunit
2901	 50.45	-1	3219402..3219512	+	36	39998011	-	GSU2920	-	hypothetical protein
2902	 66.38	+1	3219940..3222354	-	804	39998012	-	GSU2921	-	5-methyltetrahydrofolate-homocysteine methyltransferase, truncation
2903	 62.96	0	3222448..3223041	-	197	39998013	-	GSU2922	-	hypothetical protein
2904	 63.61	0	3223038..3223856	-	272	39998014	murI	GSU2923	-	glutamate racemase
2905	 52.34	-1	3224073..3224414	+	113	39998015	-	GSU2924	-	hypothetical protein
2906	 62.56	0	3224422..3225396	+	324	39998016	-	GSU2925	-	hypothetical protein
2907	 65.35	0	3225393..3226154	+	253	39998017	-	GSU2926	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative
2908	 54.74	-1	3226255..3226539	+	94	39998018	-	GSU2927	-	cytochrome c, putative
2909	 63.08	0	3226547..3227131	+	194	39998019	-	GSU2928	-	hypothetical protein
2910	 57.58	0	3227205..3227600	+	131	39998020	-	GSU2929	-	hypothetical protein
2911	 65.70	0	3227678..3228295	-	205	39998021	-	GSU2930	-	cytochrome c family protein
2912	 68.60	+1	3228374..3228838	+	154	39998022	-	GSU2931	-	hypothetical protein
2913	 62.16	0	3228939..3229559	-	206	39998023	-	GSU2932	-	cytochrome b/b6
2914	 66.92	+1	3229556..3229951	-	131	39998024	-	GSU2933	-	cytochrome b/b6 complex, iron-sulfur subunit
2915	 68.90	+1	3229906..3231159	-	417	39998025	-	GSU2934	-	cytochrome c family protein
2916	 65.10	0	3231104..3233077	-	657	39998026	-	GSU2935	-	cytochrome c family protein
2917	 58.26	0	3233101..3233421	-	106	39998027	-	GSU2936	-	hypothetical protein
2918	 60.10	0	3233479..3234453	-	324	39998028	-	GSU2937	-	cytochrome c family protein
2919	 60.63	0	3234566..3234880	-	104	39998029	-	GSU2938	-	hypothetical protein
2920	 59.05	0	3234920..3236140	-	406	39998030	-	GSU2939	-	outer membrane porin FmdC, putative
2921	 59.63	0	3236208..3237614	-	468	39998031	-	GSU2940	-	putative lipoprotein
2922	 59.62	0	3237885..3238820	+	311	39998032	-	GSU2941	-	LysR family transcriptional regulator
2923	 62.45	0	3238978..3240612	+	544	39998033	-	GSU2942	-	methyl-accepting chemotaxis protein
2924	 63.70	0	3240768..3241205	+	145	39998034	-	GSU2943	-	hypothetical protein
2925	 61.65	0	3241463..3242758	+	431	39998035	-	GSU2944	-	(R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit, putative
2926	 67.07	+1	3242763..3243509	+	248	39998036	-	GSU2945	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative
2927	 62.95	0	3243689..3244360	+	223	39998037	-	GSU2946	-	DNA-binding heavy metal response regulator
2928	 63.87	0	3244341..3245768	+	475	39998038	-	GSU2947	-	sensor histidine kinase
2929	 62.25	0	3245954..3247855	+	633	39998039	-	GSU2948	-	hypothetical protein
2930	 65.51	0	3247858..3248718	+	286	39998040	-	GSU2949	-	PAP2 family protein
2931	 65.24	0	3248816..3250432	+	538	39998041	-	GSU2950	-	ABC transporter, permease protein
2932	 66.74	+1	3250442..3251749	+	435	39998042	-	GSU2951	-	ABC transporter, ATP-binding protein
2933	 61.99	0	3251800..3252141	+	113	39998043	-	GSU2952	-	ArsR family transcriptional regulator
2934	 63.12	0	3252197..3252619	+	140	39998044	arsC	GSU2953	-	arsenate reductase
2935	 61.82	0	3252612..3253664	+	350	39998045	acr3	GSU2954	-	arsenical-resistance protein
2936	 57.17	0	3253679..3254626	+	315	39998046	-	GSU2955	-	hypothetical protein
2937	 51.48	-1	3254643..3254879	+	78	39998047	-	GSU2956	-	redox-active disulfide protein 2
2938	 62.43	0	3254879..3255256	+	125	39998048	-	GSU2957	-	thioredoxin family protein
2939	 64.77	0	3255253..3255939	+	228	39998049	-	GSU2958	-	thiol:disulfide interchange protein, putative
2940	 63.79	0	3255969..3256628	+	219	39998050	-	GSU2959	-	hypothetical protein
2941	 64.26	0	3256634..3257671	-	345	39998051	modC	GSU2960	-	molybdenum ABC transporter, ATP-binding protein modC
2942	 61.26	0	3257691..3258374	-	227	39998052	modB	GSU2961	-	molybdenum ABC transporter, permease protein modB
2943	 60.82	0	3258378..3259130	-	250	39998053	modA	GSU2962	-	molybdenum ABC transporter, periplasmic molybdenum-binding protein modA
2944	 63.97	0	3259168..3260019	-	283	39998054	-	GSU2963	-	modD protein
2945	 60.37	0	3260255..3261064	-	269	39998055	modE	GSU2964	-	molybdenum transport regulatory protein ModE
2946	 62.11	0	3261189..3261737	-	182	39998056	-	GSU2965	-	hypothetical protein
2947	 58.56	0	3261759..3261980	+	73	39998057	-	GSU2966	-	hypothetical protein
2948	 60.16	0	3262124..3262615	+	163	39998058	-	GSU2967	-	hypothetical protein
2949	 62.45	0	3262848..3263108	+	86	39998059	-	GSU2968	-	hypothetical protein
2950	 60.97	0	3263301..3264248	+	315	39998060	-	GSU2969	-	sensory box/GGDEF family protein
2951	 59.11	0	3264290..3264580	+	96	39998061	-	GSU2970	-	hypothetical protein
2952	 61.95	0	3264683..3264979	+	98	39998062	-	GSU2972	-	hypothetical protein
2953	 63.82	0	3264691..3264936	-	81	39998063	-	GSU2971	-	hypothetical protein
2954	 58.70	0	3265018..3265431	-	137	39998064	-	GSU2973	-	putative lipoprotein
2955	 66.39	+1	3265450..3267267	-	605	39998065	-	GSU2974	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
2956	 65.21	0	3267264..3268916	-	550	39998066	-	GSU2975	-	putative manganese-dependent inorganic pyrophosphatase
2957	 61.47	0	3269006..3269602	+	198	39998067	-	GSU2976	-	DedA family protein
2958	 60.78	0	3269687..3270331	-	214	39998068	-	GSU2977	-	putative translaldolase
2959	 59.84	0	3270375..3270623	-	82	39998069	-	GSU2978	-	hypothetical protein
2960	 63.01	0	3270642..3271133	-	163	39998070	folK	GSU2979	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2961	 60.00	0	3271194..3271613	-	139	39998071	-	GSU2980	-	nickel responsive regulator
2962	 70.69	+1	3271715..3272584	-	289	39998072	-	GSU2981	-	TonB-dependent receptor, putative
2963	 61.48	0	3272590..3274689	-	699	39998073	-	GSU2982	-	TonB dependent receptor, putative
2964	 60.34	0	3275022..3275558	-	178	39998074	-	GSU2983	-	hypothetical protein
2965	 62.76	0	3275601..3276419	-	272	39998075	-	GSU2984	-	ABC transporter, permease protein
2966	 66.67	+1	3276434..3277186	-	250	39998076	-	GSU2985	-	ABC transporter, ATP-binding protein
2967	 65.14	0	3277177..3278157	-	326	39998077	-	GSU2986	-	adhesion lipoprotein
2968	 61.90	0	3278158..3278577	-	139	39998078	-	GSU2987	-	FUR family transcriptional regulator
2969	 66.30	+1	3279233..3280603	+	456	39998079	-	GSU2988	-	hypothetical protein
2970	 69.43	+1	3280633..3281718	-	361	39998080	-	GSU2989	-	L-threonine-O-3-phosphate decarboxylase, putative
2971	 67.81	+1	3281715..3282677	-	320	39998081	cobD	GSU2990	-	cobalamin biosynthesis protein CobD
2972	 63.52	0	3282674..3284707	-	677	39998082	-	GSU2991	-	sensor histidine kinase
2973	 65.04	0	3284732..3286330	-	532	39998083	cobQ	GSU2992	-	cobyric acid synthase
2974	 66.76	+1	3287136..3288191	-	351	39998084	-	GSU2993	-	cobalamin biosynthesis protein CbiG, putative
2975	 69.31	+1	3288222..3289016	-	264	39998085	cobM	GSU2994	-	precorrin-4 C11-methyltransferase
2976	 64.70	0	3289047..3289757	-	236	39998086	cobI	GSU2995	-	precorrin-2 C20-methyltransferase
2977	 63.55	0	3289754..3290971	-	405	39998087	cobL	GSU2996	-	precorrin-6y c5,15-methyltransferase
2978	 68.69	+1	3291016..3292104	-	362	39998088	cbiD	GSU2997	-	cobalamin biosynthesis protein CbiD
2979	 64.09	0	3292111..3292653	-	180	39998089	-	GSU2998	-	nitroimidazole resistance protein, putative
2980	 68.07	+1	3292653..3293294	-	213	39998090	cobH	GSU2999	-	precorrin-8X methylmutase
2981	 65.62	0	3293294..3293677	-	127	39998091	-	GSU3000	-	cbiX protein
2982	 65.12	0	3293679..3294518	-	279	39998092	-	GSU3001	-	cobalt ABC transporter, ATP-binding protein
2983	 67.86	+1	3294515..3295270	-	251	39998093	-	GSU3002	-	cobalt ABC transporter, permease protein
2984	 61.82	0	3295267..3295782	-	171	39998094	-	GSU3003	-	hypothetical protein
2985	 66.46	+1	3295769..3296734	-	321	161579497	-	GSU3004	-	cobalt transport protein CbiM
2986	 67.05	+1	3297117..3298424	-	435	39998096	thiC-2	GSU3005	-	thiamine biosynthesis protein ThiC
2987	 66.45	+1	3298421..3299815	-	464	39998097	cobB	GSU3006	-	cobyrinic acid a,c-diamide synthase
2988	 63.76	0	3299819..3300472	-	217	39998098	-	GSU3007	-	phosphoglycerate mutase family protein, putative
2989	 68.02	+1	3300552..3301292	-	246	39998099	cobS	GSU3008	-	cobalamin 5'-phosphate synthase
2990	 64.59	0	3301289..3302347	-	352	39998100	cobT	GSU3009	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2991	 64.93	0	3302370..3302888	-	172	39998101	cobU	GSU3010	-	bifunctional cobalamin biosynthesis protein CobU
2992	 56.25	0	3302867..3303058	-	63	39998102	-	GSU3011	-	hypothetical protein
2993	 53.94	-1	3303119..3303283	+	54	39998103	-	GSU3012	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.