IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2842	 54.59	-1	3130763..3132841	-	692	39997952	fusA-3	GSU2860	-	elongation factor G
2843	 54.35	-1	3132883..3133353	-	156	39997953	rpsG	GSU2861	-	30S ribosomal protein S7
2844	 58.86	0	3138159..3142271	-	1370	39997954	rpoB	GSU2863	-	DNA-directed RNA polymerase subunit beta
2845	 58.59	0	3142434..3142817	-	127	39997955	rplL	GSU2864	-	50S ribosomal protein L7/L12
2846	 57.90	0	3142865..3143389	-	174	39997956	rplJ	GSU2865	-	50S ribosomal protein L10
2847	 60.71	0	3143569..3144273	-	234	39997957	rplA	GSU2866	-	50S ribosomal protein L1
2848	 56.10	0	3144291..3144716	-	141	39997958	rplK	GSU2867	-	50S ribosomal protein L11
2849	 54.73	-1	3144778..3145305	-	175	39997959	nusG	GSU2868	-	transcription antitermination protein NusG
2850	 54.23	-1	3145321..3145521	-	66	39997960	secE	GSU2869	-	preprotein translocase subunit SecE
2851	 50.67	-1	3145659..3145808	-	49	39997961	rpmG	GSU2870	-	50S ribosomal protein L33
2852	 60.71	0	3145862..3147052	-	396	39997962	tuf-2	GSU2871	-	elongation factor Tu
2853	 61.87	0	3147726..3148538	-	270	39997963	-	GSU2872	-	electron transfer flavoprotein
2854	 66.94	+1	3148608..3150425	-	605	39997964	-	GSU2873	-	radical SAM domain-containing protein
2855	 63.21	0	3150441..3151481	-	346	39997965	argC	GSU2874	-	N-acetyl-gamma-glutamyl-phosphate reductase
2856	 60.81	0	3151592..3151984	-	130	39997966	rpsI	GSU2875	-	30S ribosomal protein S9
2857	 56.48	0	3152018..3152449	-	143	39997967	rplM	GSU2876	-	50S ribosomal protein L13
2858	 66.12	+1	3152554..3153288	-	244	39997968	truA	GSU2877	-	tRNA pseudouridine synthase A
2859	 63.59	0	3153358..3154461	-	367	39997969	-	GSU2878	-	aspartate-semialdehyde dehydrogenase
2860	 64.55	0	3154503..3155591	-	362	39997970	leuB	GSU2879	-	3-isopropylmalate dehydrogenase
2861	 60.91	0	3155698..3156531	-	277	39997971	-	GSU2880	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
2862	 64.90	0	3156513..3157814	+	433	39997972	-	GSU2881	-	hypothetical protein
2863	 67.10	+1	3157976..3160042	-	688	39997973	-	GSU2882	-	cytochrome c family protein
2864	 67.33	+1	3160224..3162932	-	902	39997974	-	GSU2883	-	cytochrome c family protein
2865	 67.47	+1	3163008..3166124	-	1038	39997975	-	GSU2884	-	cytochrome c family protein
2866	 65.84	0	3166135..3168801	-	888	39997976	-	GSU2885	-	NHL repeat-containing protein
2867	 64.07	0	3169273..3170544	+	423	39997977	-	GSU2886	-	TonB-dependent receptor, putative
2868	 65.01	0	3170511..3173165	-	884	39997978	-	GSU2887	-	cytochrome c family protein
2869	 61.90	0	3173653..3175164	-	503	39997979	-	GSU2888	-	B12 binding /radical SAM domain-containing protein
2870	 59.89	0	3175424..3175777	-	117	39997980	-	GSU2889	-	hypothetical protein
2871	 60.51	0	3175814..3176641	-	275	39997981	-	GSU2890	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
2872	 65.49	0	3176689..3177966	-	425	39997982	-	GSU2891	-	hypothetical protein
2873	 70.18	+1	3178124..3178294	-	56	39997983	-	GSU2892	-	hypothetical protein
2874	 63.55	0	3178281..3179501	-	406	39997984	-	GSU2893	-	hypothetical protein
2875	 62.20	0	3180104..3180841	+	245	39997985	-	GSU2894	-	hypothetical protein
2876	 64.98	0	3180870..3181403	-	177	39997986	-	GSU2895	-	hypothetical protein
2877	 63.78	0	3181453..3182493	-	346	39997987	-	GSU2896	-	ankyrin-related protein
2878	 58.33	0	3182630..3182725	-	31	39997988	-	GSU2897	-	hypothetical protein
2879	 64.98	0	3182745..3191156	-	2803	39997989	-	GSU2898	-	high-molecular-weight cytochrome c
2880	 66.02	0	3191201..3194140	-	979	39997990	-	GSU2899	-	high-molecular-weight cytochrome c
2881	 40.40	-2	3194429..3194527	+	32	39997991	-	GSU2900	-	hypothetical protein
2882	 70.04	+1	3194535..3195572	-	345	39997992	-	GSU2901	-	hypothetical protein
2883	 65.49	0	3195596..3196189	-	197	39997993	-	GSU2902	-	TPR domain-containing protein
2884	 62.79	0	3196158..3196931	-	257	39997994	-	GSU2903	-	hypothetical protein
2885	 68.16	+1	3197101..3197970	-	289	39997995	-	GSU2904	-	hypothetical protein
2886	 67.86	+1	3197975..3199144	-	389	39997996	-	GSU2905	-	radical SAM domain-containing protein
2887	 58.88	0	3199445..3199765	-	106	39997997	-	GSU2906	-	hypothetical protein
2888	 66.07	0	3199825..3201660	-	611	39997998	-	GSU2907	-	hypothetical protein
2889	 64.58	0	3201779..3202687	-	302	39997999	-	GSU2908	-	hypothetical protein
2890	 62.54	0	3202707..3203264	-	185	39998000	-	GSU2909	-	putative lipoprotein
2891	 68.70	+1	3203337..3204026	-	229	39998001	-	GSU2910	-	hypothetical protein
2892	 66.03	0	3204023..3206524	-	833	39998002	-	GSU2911	-	hypothetical protein
2893	 64.95	0	3206802..3209942	-	1046	39998003	-	GSU2912	-	cytochrome c family protein
2894	 60.24	0	3209979..3210818	-	279	39998004	-	GSU2913	-	cytochrome c family protein
2895	 62.70	0	3210885..3213581	-	898	39998005	-	GSU2914	-	NHL repeat-containing protein
2896	 57.42	0	3213944..3215317	-	457	39998006	-	GSU2915	-	sigma-54 dependent DNA-binding response regulator
2897	 59.90	0	3215428..3216891	-	487	39998007	-	GSU2916	-	sensor histidine kinase
2898	 61.08	0	3217011..3217493	-	160	39998008	-	GSU2917	-	hypothetical protein
2899	 64.02	0	3217554..3218498	-	314	39998009	-	GSU2918	-	transketolase, C-terminal subunit
2900	 62.95	0	3218541..3219374	-	277	39998010	-	GSU2919	-	transketolase, N-terminal subunit
2901	 50.45	-1	3219402..3219512	+	36	39998011	-	GSU2920	-	hypothetical protein
2902	 66.38	+1	3219940..3222354	-	804	39998012	-	GSU2921	-	5-methyltetrahydrofolate-homocysteine methyltransferase, truncation
2903	 62.96	0	3222448..3223041	-	197	39998013	-	GSU2922	-	hypothetical protein
2904	 63.61	0	3223038..3223856	-	272	39998014	murI	GSU2923	-	glutamate racemase
2905	 52.34	-1	3224073..3224414	+	113	39998015	-	GSU2924	-	hypothetical protein
2906	 62.56	0	3224422..3225396	+	324	39998016	-	GSU2925	-	hypothetical protein
2907	 65.35	0	3225393..3226154	+	253	39998017	-	GSU2926	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative
2908	 54.74	-1	3226255..3226539	+	94	39998018	-	GSU2927	-	cytochrome c, putative
2909	 63.08	0	3226547..3227131	+	194	39998019	-	GSU2928	-	hypothetical protein
2910	 57.58	0	3227205..3227600	+	131	39998020	-	GSU2929	-	hypothetical protein
2911	 65.70	0	3227678..3228295	-	205	39998021	-	GSU2930	-	cytochrome c family protein
2912	 68.60	+1	3228374..3228838	+	154	39998022	-	GSU2931	-	hypothetical protein
2913	 62.16	0	3228939..3229559	-	206	39998023	-	GSU2932	-	cytochrome b/b6
2914	 66.92	+1	3229556..3229951	-	131	39998024	-	GSU2933	-	cytochrome b/b6 complex, iron-sulfur subunit
2915	 68.90	+1	3229906..3231159	-	417	39998025	-	GSU2934	-	cytochrome c family protein
2916	 65.10	0	3231104..3233077	-	657	39998026	-	GSU2935	-	cytochrome c family protein
2917	 58.26	0	3233101..3233421	-	106	39998027	-	GSU2936	-	hypothetical protein
2918	 60.10	0	3233479..3234453	-	324	39998028	-	GSU2937	-	cytochrome c family protein
2919	 60.63	0	3234566..3234880	-	104	39998029	-	GSU2938	-	hypothetical protein
2920	 59.05	0	3234920..3236140	-	406	39998030	-	GSU2939	-	outer membrane porin FmdC, putative
2921	 59.63	0	3236208..3237614	-	468	39998031	-	GSU2940	-	putative lipoprotein
2922	 59.62	0	3237885..3238820	+	311	39998032	-	GSU2941	-	LysR family transcriptional regulator
2923	 62.45	0	3238978..3240612	+	544	39998033	-	GSU2942	-	methyl-accepting chemotaxis protein
2924	 63.70	0	3240768..3241205	+	145	39998034	-	GSU2943	-	hypothetical protein
2925	 61.65	0	3241463..3242758	+	431	39998035	-	GSU2944	-	(R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit, putative
2926	 67.07	+1	3242763..3243509	+	248	39998036	-	GSU2945	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative
2927	 62.95	0	3243689..3244360	+	223	39998037	-	GSU2946	-	DNA-binding heavy metal response regulator
2928	 63.87	0	3244341..3245768	+	475	39998038	-	GSU2947	-	sensor histidine kinase
2929	 62.25	0	3245954..3247855	+	633	39998039	-	GSU2948	-	hypothetical protein
2930	 65.51	0	3247858..3248718	+	286	39998040	-	GSU2949	-	PAP2 family protein
2931	 65.24	0	3248816..3250432	+	538	39998041	-	GSU2950	-	ABC transporter, permease protein
2932	 66.74	+1	3250442..3251749	+	435	39998042	-	GSU2951	-	ABC transporter, ATP-binding protein
2933	 61.99	0	3251800..3252141	+	113	39998043	-	GSU2952	-	ArsR family transcriptional regulator
2934	 63.12	0	3252197..3252619	+	140	39998044	arsC	GSU2953	-	arsenate reductase
2935	 61.82	0	3252612..3253664	+	350	39998045	acr3	GSU2954	-	arsenical-resistance protein
2936	 57.17	0	3253679..3254626	+	315	39998046	-	GSU2955	-	hypothetical protein
2937	 51.48	-1	3254643..3254879	+	78	39998047	-	GSU2956	-	redox-active disulfide protein 2
2938	 62.43	0	3254879..3255256	+	125	39998048	-	GSU2957	-	thioredoxin family protein
2939	 64.77	0	3255253..3255939	+	228	39998049	-	GSU2958	-	thiol:disulfide interchange protein, putative
2940	 63.79	0	3255969..3256628	+	219	39998050	-	GSU2959	-	hypothetical protein
2941	 64.26	0	3256634..3257671	-	345	39998051	modC	GSU2960	-	molybdenum ABC transporter, ATP-binding protein modC
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.