IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2804	 60.80	0	3104018..3104887	-	289	39997914	nifH	GSU2821	-	nitrogenase iron protein
2805	 58.51	0	3105261..3105836	-	191	39997915	-	GSU2822	-	response regulator
2806	 66.26	+1	3105998..3106987	+	329	39997916	-	GSU2823	-	HlyD family secretion protein
2807	 64.46	0	3108907..3110040	+	377	39997917	-	GSU2825	-	hypothetical protein
2808	 56.94	0	3110043..3111173	+	376	39997918	-	GSU2826	-	hypothetical protein
2809	 55.56	0	3111249..3111590	-	113	39997919	-	GSU2827	-	hypothetical protein
2810	 61.44	0	3111708..3112568	-	286	39997920	-	GSU2828	-	GGDEF domain-containing protein
2811	 59.02	0	3112696..3114081	-	461	39997921	-	GSU2829	-	deoxyribodipyrimidine photolyase, putative
2812	 56.25	0	3114556..3115083	-	175	39997922	rplQ	GSU2830	-	50S ribosomal protein L17
2813	 52.39	-1	3115118..3116140	-	340	39997923	rpoA	GSU2831	-	DNA-directed RNA polymerase subunit alpha
2814	 53.43	-1	3116173..3116799	-	208	39997924	rpsD	GSU2832	-	30S ribosomal protein S4
2815	 56.82	0	3116837..3117232	-	131	39997925	rpsK	GSU2833	-	30S ribosomal protein S11
2816	 57.18	0	3117254..3117622	-	122	39997926	rpsM	GSU2834	-	30S ribosomal protein S13
2817	 53.41	-1	3117790..3118536	-	248	39997927	map	GSU2835	-	methionine aminopeptidase, type I
2818	 54.59	-1	3118533..3119186	-	217	39997928	adk	GSU2836	-	adenylate kinase
2819	 52.60	-1	3119208..3120515	-	435	39997929	secY	GSU2837	-	preprotein translocase subunit SecY
2820	 54.81	-1	3120512..3120958	-	148	39997930	rplO	GSU2838	-	50S ribosomal protein L15
2821	 52.22	-1	3120978..3121157	-	59	39997931	rpmD	GSU2839	-	50S ribosomal protein L30
2822	 55.01	-1	3121179..3121667	-	162	39997932	rpsE	GSU2840	-	30S ribosomal protein S5
2823	 53.91	-1	3121690..3122034	-	114	39997933	rplR	GSU2841	-	50S ribosomal protein L18
2824	 53.89	-1	3122077..3122616	-	179	39997934	rplF	GSU2842	-	50S ribosomal protein L6
2825	 53.38	-1	3122645..3123043	-	132	39997935	rpsH	GSU2843	-	30S ribosomal protein S8
2826	 52.69	-1	3123080..3123265	-	61	39997936	rpsN	GSU2844	-	30S ribosomal protein S14
2827	 50.56	-1	3123285..3123824	-	179	39997937	rplE	GSU2845	-	50S ribosomal protein L5
2828	 51.99	-1	3123839..3124165	-	108	39997938	rplX	GSU2846	-	50S ribosomal protein L24
2829	 51.49	-1	3124189..3124557	-	122	39997939	rplN	GSU2847	-	50S ribosomal protein L14
2830	 46.90	-2	3124571..3124828	-	85	39997940	rpsQ	GSU2848	-	30S ribosomal protein S17
2831	 46.15	-2	3124841..3125035	-	64	39997941	rpmC	GSU2849	-	50S ribosomal protein L29
2832	 55.08	-1	3125019..3125441	-	140	39997942	rplP	GSU2850	-	50S ribosomal protein L16
2833	 52.67	-1	3125460..3126095	-	211	39997943	rpsC	GSU2851	-	30S ribosomal protein S3
2834	 55.36	0	3126113..3126448	-	111	39997944	rplV	GSU2852	-	50S ribosomal protein L22
2835	 49.29	-2	3126471..3126752	-	93	39997945	rpsS	GSU2853	-	30S ribosomal protein S19
2836	 53.70	-1	3126780..3127604	-	274	39997946	rplB	GSU2854	-	50S ribosomal protein L2
2837	 50.18	-1	3127629..3127913	-	94	39997947	rplW	GSU2855	-	50S ribosomal protein L23
2838	 50.48	-1	3127910..3128533	-	207	39997948	rplD	GSU2856	-	50S ribosomal protein L4
2839	 55.13	-1	3128558..3129190	-	210	39997949	rplC	GSU2857	-	50S ribosomal protein L3
2840	 53.40	-1	3129218..3129526	-	102	39997950	rpsJ	GSU2858	-	30S ribosomal protein S10
2841	 60.54	0	3129545..3130735	-	396	39997951	tuf-1	GSU2859	-	elongation factor Tu
2842	 54.59	-1	3130763..3132841	-	692	39997952	fusA-3	GSU2860	-	elongation factor G
2843	 54.35	-1	3132883..3133353	-	156	39997953	rpsG	GSU2861	-	30S ribosomal protein S7
2844	 58.86	0	3138159..3142271	-	1370	39997954	rpoB	GSU2863	-	DNA-directed RNA polymerase subunit beta
2845	 58.59	0	3142434..3142817	-	127	39997955	rplL	GSU2864	-	50S ribosomal protein L7/L12
2846	 57.90	0	3142865..3143389	-	174	39997956	rplJ	GSU2865	-	50S ribosomal protein L10
2847	 60.71	0	3143569..3144273	-	234	39997957	rplA	GSU2866	-	50S ribosomal protein L1
2848	 56.10	0	3144291..3144716	-	141	39997958	rplK	GSU2867	-	50S ribosomal protein L11
2849	 54.73	-1	3144778..3145305	-	175	39997959	nusG	GSU2868	-	transcription antitermination protein NusG
2850	 54.23	-1	3145321..3145521	-	66	39997960	secE	GSU2869	-	preprotein translocase subunit SecE
2851	 50.67	-1	3145659..3145808	-	49	39997961	rpmG	GSU2870	-	50S ribosomal protein L33
2852	 60.71	0	3145862..3147052	-	396	39997962	tuf-2	GSU2871	-	elongation factor Tu
2853	 61.87	0	3147726..3148538	-	270	39997963	-	GSU2872	-	electron transfer flavoprotein
2854	 66.94	+1	3148608..3150425	-	605	39997964	-	GSU2873	-	radical SAM domain-containing protein
2855	 63.21	0	3150441..3151481	-	346	39997965	argC	GSU2874	-	N-acetyl-gamma-glutamyl-phosphate reductase
2856	 60.81	0	3151592..3151984	-	130	39997966	rpsI	GSU2875	-	30S ribosomal protein S9
2857	 56.48	0	3152018..3152449	-	143	39997967	rplM	GSU2876	-	50S ribosomal protein L13
2858	 66.12	+1	3152554..3153288	-	244	39997968	truA	GSU2877	-	tRNA pseudouridine synthase A
2859	 63.59	0	3153358..3154461	-	367	39997969	-	GSU2878	-	aspartate-semialdehyde dehydrogenase
2860	 64.55	0	3154503..3155591	-	362	39997970	leuB	GSU2879	-	3-isopropylmalate dehydrogenase
2861	 60.91	0	3155698..3156531	-	277	39997971	-	GSU2880	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
2862	 64.90	0	3156513..3157814	+	433	39997972	-	GSU2881	-	hypothetical protein
2863	 67.10	+1	3157976..3160042	-	688	39997973	-	GSU2882	-	cytochrome c family protein
2864	 67.33	+1	3160224..3162932	-	902	39997974	-	GSU2883	-	cytochrome c family protein
2865	 67.47	+1	3163008..3166124	-	1038	39997975	-	GSU2884	-	cytochrome c family protein
2866	 65.84	0	3166135..3168801	-	888	39997976	-	GSU2885	-	NHL repeat-containing protein
2867	 64.07	0	3169273..3170544	+	423	39997977	-	GSU2886	-	TonB-dependent receptor, putative
2868	 65.01	0	3170511..3173165	-	884	39997978	-	GSU2887	-	cytochrome c family protein
2869	 61.90	0	3173653..3175164	-	503	39997979	-	GSU2888	-	B12 binding /radical SAM domain-containing protein
2870	 59.89	0	3175424..3175777	-	117	39997980	-	GSU2889	-	hypothetical protein
2871	 60.51	0	3175814..3176641	-	275	39997981	-	GSU2890	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
2872	 65.49	0	3176689..3177966	-	425	39997982	-	GSU2891	-	hypothetical protein
2873	 70.18	+1	3178124..3178294	-	56	39997983	-	GSU2892	-	hypothetical protein
2874	 63.55	0	3178281..3179501	-	406	39997984	-	GSU2893	-	hypothetical protein
2875	 62.20	0	3180104..3180841	+	245	39997985	-	GSU2894	-	hypothetical protein
2876	 64.98	0	3180870..3181403	-	177	39997986	-	GSU2895	-	hypothetical protein
2877	 63.78	0	3181453..3182493	-	346	39997987	-	GSU2896	-	ankyrin-related protein
2878	 58.33	0	3182630..3182725	-	31	39997988	-	GSU2897	-	hypothetical protein
2879	 64.98	0	3182745..3191156	-	2803	39997989	-	GSU2898	-	high-molecular-weight cytochrome c
2880	 66.02	0	3191201..3194140	-	979	39997990	-	GSU2899	-	high-molecular-weight cytochrome c
2881	 40.40	-2	3194429..3194527	+	32	39997991	-	GSU2900	-	hypothetical protein
2882	 70.04	+1	3194535..3195572	-	345	39997992	-	GSU2901	-	hypothetical protein
2883	 65.49	0	3195596..3196189	-	197	39997993	-	GSU2902	-	TPR domain-containing protein
2884	 62.79	0	3196158..3196931	-	257	39997994	-	GSU2903	-	hypothetical protein
2885	 68.16	+1	3197101..3197970	-	289	39997995	-	GSU2904	-	hypothetical protein
2886	 67.86	+1	3197975..3199144	-	389	39997996	-	GSU2905	-	radical SAM domain-containing protein
2887	 58.88	0	3199445..3199765	-	106	39997997	-	GSU2906	-	hypothetical protein
2888	 66.07	0	3199825..3201660	-	611	39997998	-	GSU2907	-	hypothetical protein
2889	 64.58	0	3201779..3202687	-	302	39997999	-	GSU2908	-	hypothetical protein
2890	 62.54	0	3202707..3203264	-	185	39998000	-	GSU2909	-	putative lipoprotein
2891	 68.70	+1	3203337..3204026	-	229	39998001	-	GSU2910	-	hypothetical protein
2892	 66.03	0	3204023..3206524	-	833	39998002	-	GSU2911	-	hypothetical protein
2893	 64.95	0	3206802..3209942	-	1046	39998003	-	GSU2912	-	cytochrome c family protein
2894	 60.24	0	3209979..3210818	-	279	39998004	-	GSU2913	-	cytochrome c family protein
2895	 62.70	0	3210885..3213581	-	898	39998005	-	GSU2914	-	NHL repeat-containing protein
2896	 57.42	0	3213944..3215317	-	457	39998006	-	GSU2915	-	sigma-54 dependent DNA-binding response regulator
2897	 59.90	0	3215428..3216891	-	487	39998007	-	GSU2916	-	sensor histidine kinase
2898	 61.08	0	3217011..3217493	-	160	39998008	-	GSU2917	-	hypothetical protein
2899	 64.02	0	3217554..3218498	-	314	39998009	-	GSU2918	-	transketolase, C-terminal subunit
2900	 62.95	0	3218541..3219374	-	277	39998010	-	GSU2919	-	transketolase, N-terminal subunit
2901	 50.45	-1	3219402..3219512	+	36	39998011	-	GSU2920	-	hypothetical protein
2902	 66.38	+1	3219940..3222354	-	804	39998012	-	GSU2921	-	5-methyltetrahydrofolate-homocysteine methyltransferase, truncation
2903	 62.96	0	3222448..3223041	-	197	39998013	-	GSU2922	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.