IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2730	 63.89	0	3022635..3023714	+	359	39997840	-	GSU2746	-	hypothetical protein
2731	 60.32	0	3023798..3023986	-	62	39997841	-	GSU2747	-	hypothetical protein
2732	 66.48	+1	3024100..3024645	+	181	39997842	-	GSU2748	-	cytochrome c family protein, putative
2733	 68.33	+1	3024642..3025601	+	319	39997843	-	GSU2749	-	NOL1/NOP2/sun family protein
2734	 66.13	+1	3025675..3026046	-	123	39997844	-	GSU2750	-	hypothetical protein
2735	 63.05	0	3026124..3027452	-	442	39997845	dcuB	GSU2751	-	anaerobic C4-dicarboxylate transporter
2736	 43.14	-2	3027517..3027618	+	33	39997846	-	GSU2752	-	hypothetical protein
2737	 66.88	+1	3027724..3029130	-	468	39997847	-	GSU2753	-	sigma-54 dependent DNA-binding response regulator
2738	 63.04	0	3029155..3029292	+	45	39997848	-	GSU2754	-	hypothetical protein
2739	 67.91	+1	3029367..3031139	-	590	39997849	-	GSU2755	-	periplasmic substrate-binding protein/sensor histidine kinase
2740	 67.97	+1	3031262..3032029	+	255	39997850	-	GSU2756	-	hypothetical protein
2741	 69.88	+1	3033064..3038631	-	1855	39997851	-	GSU2758	-	excinuclease ABC family protein
2742	 66.67	+1	3038707..3040590	-	627	39997852	-	GSU2759	-	potassium efflux system protein
2743	 62.56	0	3040587..3041195	-	202	39997853	-	GSU2760	-	NAD(P)H oxidoreductase, putative
2744	 71.69	+2	3041518..3043071	-	517	39997854	-	GSU2761	-	FAD-dependent glycerol-3-phosphate dehydrogenase subunit
2745	 71.43	+1	3043068..3044558	-	496	39997855	glpK	GSU2762	-	glycerol kinase
2746	 64.57	0	3044601..3045077	-	158	39997856	-	GSU2763	-	hypothetical protein
2747	 61.07	0	3045108..3045482	-	124	39997857	-	GSU2764	-	hypothetical protein
2748	 70.97	+1	3045506..3045598	-	30	39997858	-	GSU2765	-	hypothetical protein
2749	 67.01	+1	3045657..3046247	-	196	39997859	-	GSU2766	-	decarboxylase family protein
2750	 70.29	+1	3046538..3046813	-	91	39997860	-	GSU2767	-	cytochrome c family protein, putative
2751	 65.95	0	3047068..3048744	+	558	39997861	-	GSU2768	-	hypothetical protein
2752	 46.85	-2	3048784..3049671	-	295	39997862	-	GSU2769	-	metallo-beta-lactamase family protein
2753	 51.80	-1	3050003..3051361	-	452	39997863	-	GSU2770	-	hypothetical protein
2754	 54.55	-1	3051489..3052445	-	318	39997864	-	GSU2771	-	hypothetical protein
2755	 54.91	-1	3052662..3053750	-	362	39997865	-	GSU2772	-	ISGsu3, transposase
2756	 38.79	-2	3053934..3054905	-	323	39997866	-	GSU2773	-	hypothetical protein
2757	 43.39	-2	3054983..3055648	-	221	39997867	-	GSU2774	-	hypothetical protein
2758	 62.84	0	3056230..3056595	-	121	39997868	-	GSU2775	-	hypothetical protein
2759	 64.04	0	3056612..3056953	-	113	39997869	-	GSU2776	-	hypothetical protein
2760	 69.01	+1	3057126..3057764	+	212	39997870	-	GSU2777	-	amino acid transporter LysE
2761	 65.05	0	3057881..3058066	+	61	39997871	-	GSU2778	-	hypothetical protein
2762	 67.20	+1	3058112..3058669	+	185	39997872	-	GSU2779	-	MerR family transcriptional regulator
2763	 59.17	0	3058694..3059200	-	168	39997873	-	GSU2780	-	hypothetical protein
2764	 67.38	+1	3059292..3060410	+	372	39997874	-	GSU2781	-	RND family efflux transporter MFP subunit
2765	 67.02	+1	3060587..3063697	+	1036	39997875	-	GSU2782	-	AcrB/AcrD/AcrF family protein
2766	 68.75	+1	3063713..3064288	+	191	39997876	-	GSU2783	-	HDIG domain-containing protein
2767	 69.23	+1	3064345..3064617	-	90	39997877	-	GSU2784	-	hypothetical protein
2768	 64.66	0	3064629..3064877	-	82	39997878	-	GSU2785	-	hypothetical protein
2769	 70.36	+1	3064891..3066027	-	378	39997879	-	GSU2786	-	cysteine desulfurase
2770	 61.98	0	3066335..3067252	+	305	39997880	-	GSU2787	-	LysR family transcriptional regulator
2771	 63.10	0	3067408..3067968	+	186	39997881	-	GSU2788	-	hypothetical protein
2772	 63.86	0	3068098..3070410	-	770	39997882	-	GSU2789	-	sensory box histidine kinase
2773	 63.59	0	3070492..3070914	-	140	39997883	-	GSU2790	-	hypothetical protein
2774	 63.86	0	3071109..3071429	+	106	161579498	-	GSU2791	-	hypothetical protein
2775	 69.32	+1	3071446..3072198	+	250	39997885	-	GSU2792	-	hypothetical protein
2776	 63.27	0	3072206..3072499	-	97	39997886	-	GSU2793	-	hypothetical protein
2777	 58.80	0	3072594..3073025	+	143	39997887	mscL	GSU2794	-	large-conductance mechanosensitive channel
2778	 64.60	0	3073134..3075119	-	661	39997888	-	GSU2795	-	iron-sulfur cluster-binding protein
2779	 65.79	0	3075175..3076197	-	340	39997889	etfA	GSU2796	-	electron transfer flavoprotein, alpha subunit
2780	 64.96	0	3076562..3077380	-	272	39997890	etfB	GSU2797	-	electron transfer flavoprotein, beta subunit
2781	 70.90	+1	3077578..3078381	-	267	39997891	-	GSU2798	-	acetyltransferase
2782	 64.60	0	3078386..3079258	-	290	39997892	-	GSU2799	-	radical SAM domain-containing protein
2783	 64.19	0	3079699..3080628	+	309	39997893	draG	GSU2800	-	dinitrogenase reductase activating glycohydrolase
2784	 63.26	0	3080715..3082181	+	488	39997894	-	GSU2801	-	cytochrome c family protein
2785	 60.78	0	3082277..3083074	-	265	39997895	dRAT	GSU2802	-	NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase
2786	 63.94	0	3083133..3083462	-	109	39997896	-	GSU2803	-	dinitrogenase iron-molybdenum cofactor family protein
2787	 56.06	0	3083491..3083754	-	87	39997897	-	GSU2804	-	ferredoxin family protein
2788	 62.82	0	3083822..3084211	-	129	39997898	nifX	GSU2805	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifX
2789	 64.46	0	3084293..3087052	-	919	39997899	nifEN	GSU2806	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifEN
2790	 61.16	0	3087268..3087957	-	229	39997900	-	GSU2807	-	hypothetical protein
2791	 58.95	0	3088058..3088627	+	189	39997901	-	GSU2808	-	cytochrome c family protein
2792	 56.64	0	3088861..3089319	+	152	39997902	-	GSU2809	-	FUR family transcriptional regulator
2793	 60.98	0	3089483..3089605	+	40	39997903	-	GSU2810	-	hypothetical protein
2794	 59.97	0	3089715..3091118	+	467	39997904	hsc	GSU2811	-	cytochrome c Hsc
2795	 60.45	0	3091152..3091553	+	133	39997905	-	GSU2812	-	glutaredoxin family protein
2796	 61.66	0	3091634..3092671	+	345	39997906	ccpA-2	GSU2813	-	cytochrome c551 peroxidase
2797	 61.61	0	3092806..3093378	+	190	39997907	-	GSU2814	-	rubrerythrin
2798	 60.93	0	3093614..3095863	+	749	39997908	-	GSU2815	-	sensory box histidine kinase
2799	 57.23	0	3095966..3098614	-	882	39997909	-	GSU2816	-	sensory box histidine kinase/response regulator
2800	 54.99	-1	3098717..3099607	-	296	39997910	-	GSU2817	-	LysR family transcriptional regulator
2801	 58.62	0	3099680..3100648	+	322	39997911	-	GSU2818	-	hypothetical protein
2802	 61.56	0	3100763..3102232	-	489	39997912	nifK	GSU2819	-	nitrogenase molybdenum-iron protein, beta subunit
2803	 60.90	0	3102400..3103839	-	479	39997913	nifD	GSU2820	-	nitrogenase molybdenum-iron protein, alpha chain
2804	 60.80	0	3104018..3104887	-	289	39997914	nifH	GSU2821	-	nitrogenase iron protein
2805	 58.51	0	3105261..3105836	-	191	39997915	-	GSU2822	-	response regulator
2806	 66.26	+1	3105998..3106987	+	329	39997916	-	GSU2823	-	HlyD family secretion protein
2807	 64.46	0	3108907..3110040	+	377	39997917	-	GSU2825	-	hypothetical protein
2808	 56.94	0	3110043..3111173	+	376	39997918	-	GSU2826	-	hypothetical protein
2809	 55.56	0	3111249..3111590	-	113	39997919	-	GSU2827	-	hypothetical protein
2810	 61.44	0	3111708..3112568	-	286	39997920	-	GSU2828	-	GGDEF domain-containing protein
2811	 59.02	0	3112696..3114081	-	461	39997921	-	GSU2829	-	deoxyribodipyrimidine photolyase, putative
2812	 56.25	0	3114556..3115083	-	175	39997922	rplQ	GSU2830	-	50S ribosomal protein L17
2813	 52.39	-1	3115118..3116140	-	340	39997923	rpoA	GSU2831	-	DNA-directed RNA polymerase subunit alpha
2814	 53.43	-1	3116173..3116799	-	208	39997924	rpsD	GSU2832	-	30S ribosomal protein S4
2815	 56.82	0	3116837..3117232	-	131	39997925	rpsK	GSU2833	-	30S ribosomal protein S11
2816	 57.18	0	3117254..3117622	-	122	39997926	rpsM	GSU2834	-	30S ribosomal protein S13
2817	 53.41	-1	3117790..3118536	-	248	39997927	map	GSU2835	-	methionine aminopeptidase, type I
2818	 54.59	-1	3118533..3119186	-	217	39997928	adk	GSU2836	-	adenylate kinase
2819	 52.60	-1	3119208..3120515	-	435	39997929	secY	GSU2837	-	preprotein translocase subunit SecY
2820	 54.81	-1	3120512..3120958	-	148	39997930	rplO	GSU2838	-	50S ribosomal protein L15
2821	 52.22	-1	3120978..3121157	-	59	39997931	rpmD	GSU2839	-	50S ribosomal protein L30
2822	 55.01	-1	3121179..3121667	-	162	39997932	rpsE	GSU2840	-	30S ribosomal protein S5
2823	 53.91	-1	3121690..3122034	-	114	39997933	rplR	GSU2841	-	50S ribosomal protein L18
2824	 53.89	-1	3122077..3122616	-	179	39997934	rplF	GSU2842	-	50S ribosomal protein L6
2825	 53.38	-1	3122645..3123043	-	132	39997935	rpsH	GSU2843	-	30S ribosomal protein S8
2826	 52.69	-1	3123080..3123265	-	61	39997936	rpsN	GSU2844	-	30S ribosomal protein S14
2827	 50.56	-1	3123285..3123824	-	179	39997937	rplE	GSU2845	-	50S ribosomal protein L5
2828	 51.99	-1	3123839..3124165	-	108	39997938	rplX	GSU2846	-	50S ribosomal protein L24
2829	 51.49	-1	3124189..3124557	-	122	39997939	rplN	GSU2847	-	50S ribosomal protein L14
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.