IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2655	 62.50	0	2945693..2947300	+	535	39997765	-	GSU2671	-	hypothetical protein
2656	 62.68	0	2947371..2947847	+	158	39997766	-	GSU2672	-	hypothetical protein
2657	 59.81	0	2947883..2949223	+	446	39997767	-	GSU2673	-	hypothetical protein
2658	 62.99	0	2949285..2953013	+	1242	39997768	-	GSU2674	-	hypothetical protein
2659	 64.15	0	2953225..2955291	-	688	39997769	-	GSU2675	-	hypothetical protein
2660	 69.78	+1	2955391..2956290	-	299	39997770	-	GSU2676	-	hypothetical protein
2661	 68.98	+1	2956339..2957247	-	302	39997771	-	GSU2677	-	hypothetical protein
2662	 57.02	0	2957582..2958037	+	151	39997772	-	GSU2678	-	HSP20 family protein
2663	 68.26	+1	2958166..2958603	+	145	39997773	-	GSU2679	-	hypothetical protein
2664	 65.80	0	2958626..2959087	+	153	39997774	-	GSU2680	-	hypothetical protein
2665	 66.35	+1	2959099..2960655	-	518	39997775	-	GSU2681	-	iron-sulfur cluster-binding protein
2666	 65.76	0	2960670..2961551	-	293	39997776	-	GSU2682	-	hypothetical protein
2667	 64.69	0	2961626..2962534	-	302	39997777	panE	GSU2683	-	2-dehydropantoate 2-reductase
2668	 67.38	+1	2962534..2962815	-	93	39997778	-	GSU2684	-	hypothetical protein
2669	 62.39	0	2962866..2963987	-	373	39997779	-	GSU2685	-	hypothetical protein
2670	 66.02	0	2963990..2966782	-	930	39997780	-	GSU2686	-	ABC transporter, ATP-binding protein
2671	 65.74	0	2966779..2967852	-	357	39997781	-	GSU2687	-	HlyD family secretion protein
2672	 56.06	0	2967889..2968020	-	43	39997782	-	GSU2688	-	hypothetical protein
2673	 61.62	0	2968017..2968115	-	32	39997783	-	GSU2689	-	hypothetical protein
2674	 62.88	0	2968161..2968925	-	254	39997784	-	GSU2690	-	hypothetical protein
2675	 60.06	0	2968929..2970215	-	428	39997785	-	GSU2691	-	hypothetical protein
2676	 63.03	0	2970258..2971247	-	329	39997786	-	GSU2692	-	immunogenic protein family protein
2677	 51.42	-1	2971392..2971778	-	128	39997787	-	GSU2693	-	response regulator
2678	 54.76	-1	2972203..2972328	+	41	39997788	-	GSU2694	-	hypothetical protein
2679	 63.09	0	2972298..2973836	-	512	39997789	-	GSU2695	-	outer membrane efflux protein
2680	 60.30	0	2973838..2976996	-	1052	39997790	-	GSU2696	-	AcrB/AcrD/AcrF family protein
2681	 63.34	0	2977070..2978272	-	400	39997791	-	GSU2697	-	multidrug resistance protein
2682	 56.37	0	2978501..2979112	-	203	39997792	-	GSU2698	-	TetR family transcriptional regulator
2683	 58.85	0	2979466..2979849	+	127	39997793	-	GSU2699	-	molybdopterin converting factor, subunit 2
2684	 57.90	0	2979878..2980687	+	269	39997794	-	GSU2700	-	tungstate ABC transporter, periplasmic tungstate-binding protein, putative
2685	 65.65	0	2980760..2981446	+	228	39997795	-	GSU2701	-	ABC transporter, permease protein
2686	 63.16	0	2981454..2982194	+	246	39997796	-	GSU2702	-	ABC transporter, ATP-binding protein
2687	 65.44	0	2982149..2983366	+	405	39997797	moeA	GSU2703	-	molybdopterin biosynthesis protein MoeA
2688	 64.80	0	2983379..2983861	+	160	39997798	moaC	GSU2704	-	molybdenum cofactor biosynthesis protein MoaC
2689	 66.87	+1	2983858..2984349	+	163	39997799	moaB	GSU2705	-	molybdenum cofactor biosynthesis protein B
2690	 61.98	0	2984470..2985471	+	333	39997800	-	GSU2706	-	phosphate acetyltransferase
2691	 57.35	0	2985616..2986881	-	421	39997801	ackA-1	GSU2707	-	acetate kinase
2692	 59.06	0	2987136..2987306	+	56	39997802	-	GSU2708	-	ferredoxin family protein
2693	 52.03	-1	2987293..2987415	-	40	39997803	-	GSU2709	-	hypothetical protein
2694	 61.18	0	2987509..2988765	-	418	39997804	-	GSU2710	-	hypothetical protein
2695	 54.42	-1	2988923..2989069	-	48	39997805	-	GSU2711	-	hypothetical protein
2696	 49.21	-2	2989086..2989211	+	41	39997806	-	GSU2712	-	hypothetical protein
2697	 57.25	0	2989184..2989873	+	229	39997807	-	GSU2713	-	hypothetical protein
2698	 57.06	0	2989839..2990816	-	325	39997808	-	GSU2714	-	metallo-beta-lactamase family protein
2699	 60.92	0	2991035..2993629	-	864	39997809	-	GSU2715	-	fibronectin type III domain-containing protein
2700	 66.52	+1	2993769..2994467	+	232	39997810	sfsA	GSU2716	-	sugar fermentation stimulation protein
2701	 69.96	+1	2994472..2994927	-	151	39997811	-	GSU2717	-	hypothetical protein
2702	 66.88	+1	2994943..2996379	-	478	39997812	hoxH	GSU2718	-	NAD-reducing hydrogenase, beta subunit
2703	 65.99	0	2996388..2996975	-	195	39997813	hoxY	GSU2719	-	NAD-reducing hydrogenase, delta subunit
2704	 64.57	0	2996972..2997688	-	238	39997814	hoxU	GSU2720	-	bidirectional hydrogenase complex protein HoxU
2705	 69.06	+1	2997688..2999400	-	570	39997815	hoxF	GSU2721	-	NAD-reducing hydrogenase, alpha subunit
2706	 65.97	0	2999397..2999972	-	191	39997816	-	GSU2722	-	bidirectional hydrogenase complex protein HoxE
2707	 62.68	0	3000077..3001054	-	325	39997817	-	GSU2723	-	putative sulfite oxidase subunit YedY
2708	 66.05	0	3001124..3003238	-	704	39997818	-	GSU2724	-	cytochrome c family protein
2709	 63.08	0	3003210..3003683	-	157	39997819	-	GSU2725	-	cytochrome c family protein
2710	 63.58	0	3003680..3004975	-	431	39997820	-	GSU2726	-	hypothetical protein
2711	 52.76	-1	3005347..3005799	+	150	39997821	-	GSU2727	-	hypothetical protein
2712	 63.41	0	3005820..3006956	-	378	39997822	-	GSU2728	-	hypothetical protein
2713	 70.11	+1	3007014..3007187	+	57	39997823	-	GSU2729	-	hypothetical protein
2714	 58.23	0	3007184..3007645	-	153	39997824	-	GSU2730	-	hypothetical protein
2715	 63.11	0	3007851..3010157	-	768	39997825	ferA	GSU2731	-	polyheme membrane-associated cytochrome c
2716	 61.49	0	3010192..3010887	-	231	39997826	-	GSU2732	-	cytochrome c family protein
2717	 60.31	0	3010903..3012114	-	403	39997827	-	GSU2733	-	hypothetical protein
2718	 56.60	0	3012118..3012276	+	52	39997828	-	GSU2734	-	hypothetical protein
2719	 60.56	0	3012258..3012863	-	201	39997829	-	GSU2735	-	TetR family transcriptional regulator
2720	 53.90	-1	3012855..3012995	+	46	39997830	-	GSU2736	-	hypothetical protein
2721	 62.77	0	3013390..3015624	-	744	39997831	-	GSU2737	-	polyheme membrane-associated cytochrome c
2722	 61.49	0	3015659..3016354	-	231	39997832	-	GSU2738	-	cytochrome c family protein
2723	 60.23	0	3016370..3017581	-	403	39997833	-	GSU2739	-	hypothetical protein
2724	 56.60	0	3017585..3017743	+	52	39997834	-	GSU2740	-	hypothetical protein
2725	 59.72	0	3017725..3018372	-	215	39997835	-	GSU2741	-	TetR family transcriptional regulator
2726	 59.44	0	3018809..3019237	-	142	39997836	-	GSU2742	-	hypothetical protein
2727	 58.93	0	3019271..3019606	-	111	39997837	-	GSU2743	-	cytochrome c family protein
2728	 68.44	+1	3019720..3020901	-	393	39997838	-	GSU2744	-	major facilitator family transporter
2729	 67.94	+1	3020923..3022410	-	495	39997839	-	GSU2745	-	AAA family ATPase
2730	 63.89	0	3022635..3023714	+	359	39997840	-	GSU2746	-	hypothetical protein
2731	 60.32	0	3023798..3023986	-	62	39997841	-	GSU2747	-	hypothetical protein
2732	 66.48	+1	3024100..3024645	+	181	39997842	-	GSU2748	-	cytochrome c family protein, putative
2733	 68.33	+1	3024642..3025601	+	319	39997843	-	GSU2749	-	NOL1/NOP2/sun family protein
2734	 66.13	+1	3025675..3026046	-	123	39997844	-	GSU2750	-	hypothetical protein
2735	 63.05	0	3026124..3027452	-	442	39997845	dcuB	GSU2751	-	anaerobic C4-dicarboxylate transporter
2736	 43.14	-2	3027517..3027618	+	33	39997846	-	GSU2752	-	hypothetical protein
2737	 66.88	+1	3027724..3029130	-	468	39997847	-	GSU2753	-	sigma-54 dependent DNA-binding response regulator
2738	 63.04	0	3029155..3029292	+	45	39997848	-	GSU2754	-	hypothetical protein
2739	 67.91	+1	3029367..3031139	-	590	39997849	-	GSU2755	-	periplasmic substrate-binding protein/sensor histidine kinase
2740	 67.97	+1	3031262..3032029	+	255	39997850	-	GSU2756	-	hypothetical protein
2741	 69.88	+1	3033064..3038631	-	1855	39997851	-	GSU2758	-	excinuclease ABC family protein
2742	 66.67	+1	3038707..3040590	-	627	39997852	-	GSU2759	-	potassium efflux system protein
2743	 62.56	0	3040587..3041195	-	202	39997853	-	GSU2760	-	NAD(P)H oxidoreductase, putative
2744	 71.69	+2	3041518..3043071	-	517	39997854	-	GSU2761	-	FAD-dependent glycerol-3-phosphate dehydrogenase subunit
2745	 71.43	+1	3043068..3044558	-	496	39997855	glpK	GSU2762	-	glycerol kinase
2746	 64.57	0	3044601..3045077	-	158	39997856	-	GSU2763	-	hypothetical protein
2747	 61.07	0	3045108..3045482	-	124	39997857	-	GSU2764	-	hypothetical protein
2748	 70.97	+1	3045506..3045598	-	30	39997858	-	GSU2765	-	hypothetical protein
2749	 67.01	+1	3045657..3046247	-	196	39997859	-	GSU2766	-	decarboxylase family protein
2750	 70.29	+1	3046538..3046813	-	91	39997860	-	GSU2767	-	cytochrome c family protein, putative
2751	 65.95	0	3047068..3048744	+	558	39997861	-	GSU2768	-	hypothetical protein
2752	 46.85	-2	3048784..3049671	-	295	39997862	-	GSU2769	-	metallo-beta-lactamase family protein
2753	 51.80	-1	3050003..3051361	-	452	39997863	-	GSU2770	-	hypothetical protein
2754	 54.55	-1	3051489..3052445	-	318	39997864	-	GSU2771	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.