IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2541	 67.16	+1	2818455..2819669	+	404	39997651	-	GSU2556	-	U32 family peptidase
2542	 69.34	+1	2819677..2820612	+	311	39997652	-	GSU2557	-	polysaccharide deacetylase family protein
2543	 62.25	0	2820654..2821469	+	271	39997653	-	GSU2558	-	hypothetical protein
2544	 65.95	0	2821751..2823292	-	513	39997654	-	GSU2559	-	exopolyphosphatase, putative
2545	 67.90	+1	2823289..2824179	-	296	39997655	-	GSU2560	-	hypothetical protein
2546	 65.71	0	2824228..2824752	-	174	39997656	-	GSU2561	-	hypothetical protein
2547	 71.40	+1	2824780..2825265	-	161	39997657	sixA	GSU2562	-	phosphohistidine phosphatase SixA
2548	 57.50	0	2825411..2825770	+	119	39997658	-	GSU2563	-	hypothetical protein
2549	 65.41	0	2825830..2827107	+	425	39997659	-	GSU2564	-	hypothetical protein
2550	 62.76	0	2827104..2827871	+	255	39997660	-	GSU2565	-	sensor histidine kinase
2551	 53.15	-1	2827850..2827960	-	36	39997661	-	GSU2566	-	hypothetical protein
2552	 64.61	0	2827974..2829725	+	583	39997662	-	GSU2567	-	sensor histidine kinase
2553	 67.97	+1	2829875..2831179	-	434	39997663	-	GSU2568	-	MiaB-like tRNA modifying enzyme
2554	 68.55	+1	2831179..2832240	-	353	39997664	trmU	GSU2569	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2555	 68.02	+1	2832260..2833444	-	394	39997665	-	GSU2570	-	cysteine desulfurase
2556	 67.35	+1	2833441..2833878	-	145	39997666	-	GSU2571	-	Rrf2 family protein
2557	 64.60	0	2833882..2834559	-	225	39997667	cysE	GSU2572	-	serine acetyltransferase
2558	 72.60	+2	2834710..2835063	-	117	39997668	-	GSU2573	-	hypothetical protein
2559	 63.23	0	2835091..2836197	-	368	39997669	-	GSU2574	-	response regulator
2560	 66.90	+1	2836201..2838753	-	850	39997670	-	GSU2575	-	sensor histidine kinase/response regulator
2561	 62.73	0	2838754..2839617	-	287	39997671	-	GSU2576	-	HD domain-containing protein
2562	 66.00	0	2839604..2839903	-	99	39997672	-	GSU2577	-	hypothetical protein
2563	 64.30	0	2840026..2840406	-	126	39997673	cheW-9	GSU2578	-	purine-binding chemotaxis protein CheW
2564	 65.93	0	2840564..2842195	-	543	39997674	-	GSU2579	-	methyl-accepting chemotaxis protein
2565	 60.44	0	2842215..2842487	-	90	39997675	-	GSU2580	-	hypothetical protein
2566	 67.40	+1	2842690..2844060	-	456	39997676	-	GSU2581	-	sigma-54 dependent transcriptional regulator
2567	 60.38	0	2844240..2845544	+	434	39997677	-	GSU2582	-	hypothetical protein
2568	 61.45	0	2846014..2846646	-	210	39997678	-	GSU2583	-	isochorismatase family protein
2569	 69.01	+1	2846785..2848278	-	497	39997679	-	GSU2584	-	putative lipoprotein
2570	 66.67	+1	2848269..2848505	-	78	39997680	-	GSU2585	-	hypothetical protein
2571	 58.83	0	2848699..2850447	-	582	39997681	-	GSU2586	-	hypothetical protein
2572	 55.71	0	2850867..2851295	+	142	39997682	-	GSU2587	-	MarR family transcriptional regulator
2573	 56.95	0	2851313..2852671	+	452	39997683	lpdA-2	GSU2588	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase
2574	 53.54	-1	2852695..2852793	+	32	39997684	-	GSU2589	-	hypothetical protein
2575	 40.29	-2	2854449..2855555	-	368	39997685	-	GSU2590	-	hypothetical protein
2576	 54.02	-1	2855722..2856504	+	260	39997686	-	GSU2591	-	ISGsu5, transposase
2577	 42.26	-2	2857020..2858330	-	436	39997687	-	GSU2592	-	hypothetical protein
2578	 58.77	0	2858365..2859390	+	341	39997688	-	GSU2593	-	ISGsu6, transposase OrfA
2579	 58.24	0	2859387..2860181	+	264	39997689	-	GSU2594	-	transposase/IS protein
2580	 48.25	-2	2861237..2861350	+	37	39997690	-	GSU2595	-	hypothetical protein
2581	 45.63	-2	2862308..2862982	-	224	39997691	-	GSU2596	-	putative lipoprotein
2582	 55.34	0	2863246..2864331	-	361	39997692	-	GSU2597	-	ISGsu2, transposase
2583	 48.48	-2	2865007..2865105	+	32	39997693	-	GSU2598	-	hypothetical protein
2584	 51.77	-1	2865265..2866311	-	348	39997694	-	GSU2599	-	ISGsu4, transposase
2585	 69.06	+1	2867897..2869654	-	585	39997695	-	GSU2601	-	TPR domain/SecC motif-containing domain protein
2586	 58.76	0	2869900..2870190	-	96	39997696	huP-1	GSU2602	-	DNA-binding protein HU
2587	 63.94	0	2870277..2872001	-	574	39997697	rpsA	GSU2603	-	30S ribosomal protein S1
2588	 62.54	0	2872104..2872952	-	282	39997698	lytB	GSU2604	-	penicillin tolerance protein LytB
2589	 69.23	+1	2872990..2873691	-	233	39997699	cmk	GSU2605	-	cytidylate kinase
2590	 69.77	+1	2873688..2874977	-	429	39997700	aroA	GSU2606	-	3-phosphoshikimate 1-carboxyvinyltransferase
2591	 68.84	+1	2874994..2875866	-	290	39997701	-	GSU2607	-	prephenate dehydrogenase
2592	 63.23	0	2875863..2876939	-	358	39997702	pheA	GSU2608	-	chorismate mutase/prephenate dehydratase
2593	 63.73	0	2877043..2878980	-	645	39997703	-	GSU2609	-	type IV pilus assembly protein, putative
2594	 65.24	0	2879012..2880550	-	512	39997704	-	GSU2610	-	LysM domain-containing protein
2595	 67.25	+1	2880625..2882007	-	460	39997705	-	GSU2611	-	hypothetical protein
2596	 63.31	0	2882323..2882829	-	168	39997706	-	GSU2612	-	rubrerythrin/rubredoxin protein, putative
2597	 61.62	0	2882887..2883777	-	296	39997707	-	GSU2613	-	cation efflux family protein
2598	 67.99	+1	2883767..2885503	-	578	39997708	recJ	GSU2614	-	single-stranded-DNA-specific exonuclease RecJ
2599	 60.58	0	2885565..2886155	-	196	39997709	-	GSU2615	-	TPR domain-containing protein
2600	 58.53	0	2886169..2887077	-	302	39997710	secF	GSU2616	-	preprotein translocase subunit SecF
2601	 62.23	0	2887086..2888687	-	533	39997711	secD	GSU2617	-	preprotein translocase subunit SecD
2602	 62.31	0	2888713..2889033	-	106	39997712	-	GSU2618	-	preprotein translocase, YajC subunit
2603	 64.71	0	2889104..2890225	-	373	39997713	tgt-2	GSU2619	-	queuine tRNA-ribosyltransferase
2604	 67.93	+1	2890299..2891330	-	343	39997714	queA	GSU2620	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2605	 64.29	0	2891317..2892282	-	321	39997715	-	GSU2621	-	stage II sporulation-related protein
2606	 59.79	0	2892888..2895026	+	712	39997716	-	GSU2622	-	HAMP domain/GAF domain/HD domain-containing protein
2607	 66.46	+1	2895130..2896092	+	320	39997717	-	GSU2623	-	peptide ABC transporter, ATP-binding protein
2608	 62.25	0	2896089..2897084	+	331	39997718	-	GSU2624	-	peptide ABC transporter, ATP-binding protein
2609	 55.56	0	2897198..2897476	+	92	39997719	-	GSU2625	-	ArsR family transcriptional regulator
2610	 64.32	0	2897545..2898735	+	396	39997720	-	GSU2626	-	hypothetical protein
2611	 67.79	+1	2898797..2899600	-	267	39997721	-	GSU2627	-	biotin synthesis protein, putative
2612	 66.06	0	2899593..2900414	-	273	39997722	-	GSU2628	-	non-heme peroxidase, putative
2613	 68.54	+1	2900426..2901601	-	391	39997723	bioF	GSU2629	-	8-amino-7-oxononanoate synthase
2614	 65.64	0	2901768..2902451	+	227	39997724	-	GSU2630	-	serine/threonine protein phosphatase, putative
2615	 59.47	0	2902448..2902864	+	138	39997725	-	GSU2631	-	hypothetical protein
2616	 65.37	0	2902943..2904178	+	411	39997726	-	GSU2632	-	GGDEF domain-containing protein
2617	 62.46	0	2904304..2904921	+	205	39997727	-	GSU2633	-	putative lipoprotein
2618	 58.63	0	2905012..2905347	-	111	39997728	-	GSU2634	-	hypothetical protein
2619	 56.19	0	2905385..2905804	-	139	39997729	-	GSU2635	-	hypothetical protein
2620	 64.67	0	2905877..2907730	-	617	39997730	-	GSU2636	-	alpha-amylase family protein
2621	 61.70	0	2907815..2908801	-	328	39997731	-	GSU2637	-	alcohol dehydrogenase, zinc-containing
2622	 67.50	+1	2908915..2909394	-	159	39997732	-	GSU2638	-	hypothetical protein
2623	 67.57	+1	2909401..2911500	-	699	39997733	-	GSU2639	-	hypothetical protein
2624	 61.52	0	2911658..2912356	-	232	39997734	-	GSU2640	-	hypothetical protein
2625	 59.18	0	2912401..2913135	-	244	39997735	-	GSU2641	-	hypothetical protein
2626	 62.46	0	2913384..2914073	-	229	39997736	-	GSU2642	-	cytochrome c family protein
2627	 60.42	0	2914105..2914536	-	143	39997737	-	GSU2643	-	cytochrome c family protein
2628	 61.69	0	2914617..2915861	-	414	39997738	-	GSU2644	-	hypothetical protein
2629	 62.44	0	2915960..2916835	-	291	39997739	-	GSU2645	-	cytochrome c family protein
2630	 57.96	0	2917145..2917477	+	110	39997740	-	GSU2646	-	hypothetical protein
2631	 65.86	0	2917553..2918422	-	289	39997741	-	GSU2647	-	hypothetical protein
2632	 57.28	0	2918536..2919057	-	173	39997742	-	GSU2648	-	hypothetical protein
2633	 60.86	0	2919433..2920242	+	269	39997743	-	GSU2649	-	amino acid ABC transporter, amino acid-binding protein
2634	 63.88	0	2920249..2921037	+	262	39997744	-	GSU2650	-	amino acid ABC transporter, permease protein, putative
2635	 66.53	+1	2921027..2921758	+	243	39997745	-	GSU2651	-	amino acid ABC transporter, ATP-binding protein
2636	 60.90	0	2921970..2923148	+	392	39997746	-	GSU2652	-	methyl-accepting chemotaxis protein
2637	 67.29	+1	2923302..2924756	+	484	39997747	-	GSU2653	-	MATE efflux family protein
2638	 68.46	+1	2924871..2925929	+	352	39997748	pdhA	GSU2654	-	pyruvate dehydrogenase complex E1 component, alpha subunit
2639	 69.57	+1	2925945..2926907	+	320	39997749	pdhB	GSU2655	-	pyruvate dehydrogenase complex E1 component, beta subunit
2640	 66.16	+1	2927243..2928421	+	392	39997750	aceF	GSU2656	-	branched-chain alpha-keto acid dehydrogenase subunit E2
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.