IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2504	 62.89	0	2777649..2778812	-	387	39997614	-	GSU2519	-	(R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
2505	 67.98	+1	2778846..2779607	-	253	39997615	-	GSU2520	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator
2506	 65.99	0	2779657..2780244	-	195	39997616	-	GSU2521	-	hypothetical protein
2507	 60.61	0	2780416..2780778	-	120	39997617	-	GSU2522	-	hypothetical protein
2508	 68.67	+1	2780905..2781801	+	298	39997618	-	GSU2523	-	LysR family transcriptional regulator
2509	 63.73	0	2781835..2783229	+	464	39997619	-	GSU2524	-	sigma-54 dependent DNA-binding response regulator
2510	 67.26	+1	2783251..2783754	-	167	39997620	-	GSU2525	-	nitroreductase family protein
2511	 57.14	0	2783754..2784488	-	244	39997621	-	GSU2526	-	hypothetical protein
2512	 68.20	+1	2784677..2785978	-	433	39997622	-	GSU2527	-	nitrite/sulfite reductase domain-containing protein
2513	 68.27	+1	2786069..2788183	-	704	39997623	-	GSU2528	-	hypothetical protein
2514	 67.83	+1	2788182..2790251	+	689	39997624	fusA-2	GSU2529	-	elongation factor G
2515	 70.29	+1	2790261..2791337	-	358	39997625	-	GSU2530	-	GTPase YjeQ
2516	 63.28	0	2791476..2794637	-	1053	39997626	-	GSU2531	-	sensory box histidine kinase
2517	 61.11	0	2794634..2795065	-	143	39997627	-	GSU2532	-	hypothetical protein
2518	 63.70	0	2795087..2796298	-	403	39997628	-	GSU2533	-	hypothetical protein
2519	 64.83	0	2796313..2797671	-	452	39997629	-	GSU2534	-	sensory box/response regulator
2520	 61.26	0	2797751..2798194	-	147	39997630	-	GSU2535	-	response regulator
2521	 65.31	0	2798512..2799324	-	270	39997631	-	GSU2536	-	dienelactone hydrolase family protein
2522	 59.38	0	2799433..2801340	-	635	39997632	speA	GSU2537	-	arginine decarboxylase
2523	 62.84	0	2801539..2802741	-	400	39997633	nspC	GSU2538	-	carboxynorspermidine decarboxylase
2524	 62.74	0	2802886..2804082	-	398	39997634	LYS1	GSU2539	-	saccharopine dehydrogenase
2525	 60.62	0	2804108..2804653	-	181	39997635	-	GSU2540	-	Cro/CI family transcriptional regulator
2526	 68.51	+1	2804942..2805754	+	270	39997636	proC	GSU2541	-	pyrroline-5-carboxylate reductase
2527	 59.26	0	2805847..2806035	-	62	39997637	-	GSU2542	-	hypothetical protein
2528	 61.52	0	2806022..2806798	-	258	39997638	-	GSU2543	-	polysaccharide deacetylase domain-containing protein
2529	 65.37	0	2806908..2807603	-	231	39997639	-	GSU2544	-	hypothetical protein
2530	 65.45	0	2807613..2808188	-	191	39997640	maf	GSU2545	-	maf protein
2531	 54.61	-1	2808175..2808456	-	93	39997641	-	GSU2546	-	hypothetical protein
2532	 66.51	+1	2808536..2809840	-	434	39997642	gid	GSU2547	-	tRNA (uracil-5-)-methyltransferase Gid
2533	 64.22	0	2809837..2810244	-	135	39997643	-	GSU2548	-	hypothetical protein
2534	 62.53	0	2810320..2812593	-	757	39997644	topA	GSU2549	-	DNA topoisomerase I
2535	 68.16	+1	2812608..2813678	-	356	39997645	drpA	GSU2550	-	DNA processing protein DprA
2536	 63.89	0	2813764..2814771	-	335	39997646	-	GSU2551	-	LysM domain-containing protein
2537	 66.39	+1	2814839..2815567	-	242	39997647	-	GSU2552	-	putative lipoprotein
2538	 62.04	0	2815761..2816474	+	237	39997648	-	GSU2553	-	glycosyl transferase, group 2 family protein
2539	 54.76	-1	2816467..2816760	+	97	39997649	-	GSU2554	-	hypothetical protein
2540	 64.44	0	2816750..2818363	+	537	39997650	-	GSU2555	-	melittin resistance protein, putative
2541	 67.16	+1	2818455..2819669	+	404	39997651	-	GSU2556	-	U32 family peptidase
2542	 69.34	+1	2819677..2820612	+	311	39997652	-	GSU2557	-	polysaccharide deacetylase family protein
2543	 62.25	0	2820654..2821469	+	271	39997653	-	GSU2558	-	hypothetical protein
2544	 65.95	0	2821751..2823292	-	513	39997654	-	GSU2559	-	exopolyphosphatase, putative
2545	 67.90	+1	2823289..2824179	-	296	39997655	-	GSU2560	-	hypothetical protein
2546	 65.71	0	2824228..2824752	-	174	39997656	-	GSU2561	-	hypothetical protein
2547	 71.40	+1	2824780..2825265	-	161	39997657	sixA	GSU2562	-	phosphohistidine phosphatase SixA
2548	 57.50	0	2825411..2825770	+	119	39997658	-	GSU2563	-	hypothetical protein
2549	 65.41	0	2825830..2827107	+	425	39997659	-	GSU2564	-	hypothetical protein
2550	 62.76	0	2827104..2827871	+	255	39997660	-	GSU2565	-	sensor histidine kinase
2551	 53.15	-1	2827850..2827960	-	36	39997661	-	GSU2566	-	hypothetical protein
2552	 64.61	0	2827974..2829725	+	583	39997662	-	GSU2567	-	sensor histidine kinase
2553	 67.97	+1	2829875..2831179	-	434	39997663	-	GSU2568	-	MiaB-like tRNA modifying enzyme
2554	 68.55	+1	2831179..2832240	-	353	39997664	trmU	GSU2569	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2555	 68.02	+1	2832260..2833444	-	394	39997665	-	GSU2570	-	cysteine desulfurase
2556	 67.35	+1	2833441..2833878	-	145	39997666	-	GSU2571	-	Rrf2 family protein
2557	 64.60	0	2833882..2834559	-	225	39997667	cysE	GSU2572	-	serine acetyltransferase
2558	 72.60	+2	2834710..2835063	-	117	39997668	-	GSU2573	-	hypothetical protein
2559	 63.23	0	2835091..2836197	-	368	39997669	-	GSU2574	-	response regulator
2560	 66.90	+1	2836201..2838753	-	850	39997670	-	GSU2575	-	sensor histidine kinase/response regulator
2561	 62.73	0	2838754..2839617	-	287	39997671	-	GSU2576	-	HD domain-containing protein
2562	 66.00	0	2839604..2839903	-	99	39997672	-	GSU2577	-	hypothetical protein
2563	 64.30	0	2840026..2840406	-	126	39997673	cheW-9	GSU2578	-	purine-binding chemotaxis protein CheW
2564	 65.93	0	2840564..2842195	-	543	39997674	-	GSU2579	-	methyl-accepting chemotaxis protein
2565	 60.44	0	2842215..2842487	-	90	39997675	-	GSU2580	-	hypothetical protein
2566	 67.40	+1	2842690..2844060	-	456	39997676	-	GSU2581	-	sigma-54 dependent transcriptional regulator
2567	 60.38	0	2844240..2845544	+	434	39997677	-	GSU2582	-	hypothetical protein
2568	 61.45	0	2846014..2846646	-	210	39997678	-	GSU2583	-	isochorismatase family protein
2569	 69.01	+1	2846785..2848278	-	497	39997679	-	GSU2584	-	putative lipoprotein
2570	 66.67	+1	2848269..2848505	-	78	39997680	-	GSU2585	-	hypothetical protein
2571	 58.83	0	2848699..2850447	-	582	39997681	-	GSU2586	-	hypothetical protein
2572	 55.71	0	2850867..2851295	+	142	39997682	-	GSU2587	-	MarR family transcriptional regulator
2573	 56.95	0	2851313..2852671	+	452	39997683	lpdA-2	GSU2588	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase
2574	 53.54	-1	2852695..2852793	+	32	39997684	-	GSU2589	-	hypothetical protein
2575	 40.29	-2	2854449..2855555	-	368	39997685	-	GSU2590	-	hypothetical protein
2576	 54.02	-1	2855722..2856504	+	260	39997686	-	GSU2591	-	ISGsu5, transposase
2577	 42.26	-2	2857020..2858330	-	436	39997687	-	GSU2592	-	hypothetical protein
2578	 58.77	0	2858365..2859390	+	341	39997688	-	GSU2593	-	ISGsu6, transposase OrfA
2579	 58.24	0	2859387..2860181	+	264	39997689	-	GSU2594	-	transposase/IS protein
2580	 48.25	-2	2861237..2861350	+	37	39997690	-	GSU2595	-	hypothetical protein
2581	 45.63	-2	2862308..2862982	-	224	39997691	-	GSU2596	-	putative lipoprotein
2582	 55.34	0	2863246..2864331	-	361	39997692	-	GSU2597	-	ISGsu2, transposase
2583	 48.48	-2	2865007..2865105	+	32	39997693	-	GSU2598	-	hypothetical protein
2584	 51.77	-1	2865265..2866311	-	348	39997694	-	GSU2599	-	ISGsu4, transposase
2585	 69.06	+1	2867897..2869654	-	585	39997695	-	GSU2601	-	TPR domain/SecC motif-containing domain protein
2586	 58.76	0	2869900..2870190	-	96	39997696	huP-1	GSU2602	-	DNA-binding protein HU
2587	 63.94	0	2870277..2872001	-	574	39997697	rpsA	GSU2603	-	30S ribosomal protein S1
2588	 62.54	0	2872104..2872952	-	282	39997698	lytB	GSU2604	-	penicillin tolerance protein LytB
2589	 69.23	+1	2872990..2873691	-	233	39997699	cmk	GSU2605	-	cytidylate kinase
2590	 69.77	+1	2873688..2874977	-	429	39997700	aroA	GSU2606	-	3-phosphoshikimate 1-carboxyvinyltransferase
2591	 68.84	+1	2874994..2875866	-	290	39997701	-	GSU2607	-	prephenate dehydrogenase
2592	 63.23	0	2875863..2876939	-	358	39997702	pheA	GSU2608	-	chorismate mutase/prephenate dehydratase
2593	 63.73	0	2877043..2878980	-	645	39997703	-	GSU2609	-	type IV pilus assembly protein, putative
2594	 65.24	0	2879012..2880550	-	512	39997704	-	GSU2610	-	LysM domain-containing protein
2595	 67.25	+1	2880625..2882007	-	460	39997705	-	GSU2611	-	hypothetical protein
2596	 63.31	0	2882323..2882829	-	168	39997706	-	GSU2612	-	rubrerythrin/rubredoxin protein, putative
2597	 61.62	0	2882887..2883777	-	296	39997707	-	GSU2613	-	cation efflux family protein
2598	 67.99	+1	2883767..2885503	-	578	39997708	recJ	GSU2614	-	single-stranded-DNA-specific exonuclease RecJ
2599	 60.58	0	2885565..2886155	-	196	39997709	-	GSU2615	-	TPR domain-containing protein
2600	 58.53	0	2886169..2887077	-	302	39997710	secF	GSU2616	-	preprotein translocase subunit SecF
2601	 62.23	0	2887086..2888687	-	533	39997711	secD	GSU2617	-	preprotein translocase subunit SecD
2602	 62.31	0	2888713..2889033	-	106	39997712	-	GSU2618	-	preprotein translocase, YajC subunit
2603	 64.71	0	2889104..2890225	-	373	39997713	tgt-2	GSU2619	-	queuine tRNA-ribosyltransferase
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.